Carubv10002831m.g (Capsella rubella)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Carubv10002831m.g T228276_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-51
M00867_2.00 		Arabidopsis thaliana
ATWATKNN
NNMATWAT		 PBM
Franco-Zorrilla et al.(2014)
ATHB51 		0.705 0.696
ATHB-51
M06927_2.00 		Arabidopsis thaliana
DNCAATAATTGAD
HTCAATTATTGNH		 Dap-seq
OMalley et al.(2016)
LMI1_col_a 		0.705 0.696
ATHB-51
M06928_2.00 		Arabidopsis thaliana
NDNCAATAATTGA
TCAATTATTGNHN		 Dap-seq
OMalley et al.(2016)
LMI1_colamp_a 		0.705 0.696
ATHB-22
M02041_2.00 		Arabidopsis thaliana
NNATAATWWWNNN
NNNWWWATTATNN		 PBM
Weirauch et al.(2014)
pTH5883 		0.686 0.589
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.621 0.589
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.621 0.589
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.601 0.554
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.601 0.554
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10002831m Homeodomain 83 138

Links

Other Homeodomain family TFs
Other Capsella rubella TFs

131 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.0154s0024 Capsella grandiflora Cagra.0154s0024 I 0.865
Al_scaffold_0006_290 Arabidopsis lyrata Al_scaffold_0006_290 I 0.818
Bostr.2128s0069 Boechera stricta Bostr.2128s0069 I 0.816
ATHB-51 Arabidopsis thaliana AT5G03790 D 0.705
Bo9g181720 Brassica oleracea Bo9g181720 I 0.705
Bra009510 Brassica rapa Bra009510 I 0.705
ATHB51 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000249 I 0.705
PGSC0003DMG400002692 Solanum tuberosum PGSC0003DMG400002692 I 0.705
Solyc09g008810.2 Solanum lycopersicum Solyc09g008810.2 I 0.705
Bostr.2128s0071 Boechera stricta Bostr.2128s0071 I 0.705
Cagra.0154s0025 Capsella grandiflora Cagra.0154s0025 I 0.705
Cagra.0463s0004 Capsella grandiflora Cagra.0463s0004 I 0.705
Carubv10002440m.g Capsella rubella Carubv10002440m.g I 0.705
Thhalv10014547m.g Eutrema salsugineum Thhalv10014547m.g I 0.705
Cla018017 Citrullus lanatus Cla018017 I 0.703
Cucsa.378700 Cucumis sativus Cucsa.378700 I 0.703
Bo3g002560 Brassica oleracea Bo3g002560 I 0.701
mgf022748m Mimulus guttatus mgf022748m I 0.701
Carubv10003464m.g Capsella rubella Carubv10003464m.g I 0.695
mgf019824m Mimulus guttatus mgf019824m I 0.691
Thhalv10015784m.g Eutrema salsugineum Thhalv10015784m.g I 0.691
evm.TU.supercontig_83.103 Carica papaya evm.TU.supercontig_83.103 N 0.690
Bo2g005230 Brassica oleracea Bo2g005230 I 0.689
Bra028820 Brassica rapa Bra028820 I 0.689
ATHB-22 Arabidopsis thaliana AT2G36610 D 0.686
MDP0000316497 Malus domestica MDP0000316497 I 0.674
POPTR_0006s11890 Populus trichocarpa POPTR_0006s11890 I 0.672
29815.m000499 Ricinus communis 29815.m000499 I 0.672
cassava14646.m1 Manihot esculenta cassava14646.m1 I 0.672
Gorai.002G244000 Gossypium raimondii Gorai.002G244000 I 0.672
Gorai.002G244200 Gossypium raimondii Gorai.002G244200 I 0.672
MDP0000119544 Malus domestica MDP0000119544 I 0.671
MDP0000134241 Malus domestica MDP0000134241 I 0.671
MDP0000738604 Malus domestica MDP0000738604 I 0.671
VIT_08s0007g04200 Vitis vinifera VIT_08s0007g04200 I 0.670
Thhalv10017567m.g Eutrema salsugineum Thhalv10017567m.g I 0.670
GLYMA10G07440 Glycine max GLYMA10G07440 I 0.668
GLYMA13G21330 Glycine max GLYMA13G21330 I 0.668
PRUPE_ppa015952mg Prunus persica PRUPE_ppa015952mg I 0.668
TCM_022391 Theobroma cacao TCM_022391 I 0.668
Cla018641 Citrullus lanatus Cla018641 I 0.668
Pm026270 Prunus mume Pm026270 I 0.668
cassava34082.m1 Manihot esculenta cassava34082.m1 I 0.668
Cucsa.125070 Cucumis sativus Cucsa.125070 I 0.668
evm.TU.supercontig_5.106 Carica papaya evm.TU.supercontig_5.106 I 0.668
Gorai.009G409600 Gossypium raimondii Gorai.009G409600 I 0.668
Lus10008641.g Linum usitatissimum Lus10008641.g I 0.668
Lus10035583.g Linum usitatissimum Lus10035583.g I 0.668
Ciclev10012525m.g Citrus clementina Ciclev10012525m.g I 0.665
orange1.1g040769m.g Citrus sinensis orange1.1g040769m.g I 0.665
SapurV1A.0226s0110 Salix purpurea SapurV1A.0226s0110 I 0.664
LjSGA_022706.2 Lotus japonicus LjSGA_022706.2 I 0.664
Bostr.23794s0432 Boechera stricta Bostr.23794s0432 I 0.659
Cagra.0228s0052 Capsella grandiflora Cagra.0228s0052 I 0.659
Carubv10024148m.g Capsella rubella Carubv10024148m.g I 0.659
gene30097-v1.0-hybrid Fragaria vesca gene30097-v1.0-hybrid I 0.656
PK15535.1 Cannabis sativa PK15535.1 I 0.656
Bo4g034490 Brassica oleracea Bo4g034490 I 0.655
Bra005259 Brassica rapa Bra005259 I 0.655
GLYMA12G18720 Glycine max GLYMA12G18720 I 0.654
PGSC0003DMG400017775 Solanum tuberosum PGSC0003DMG400017775 I 0.649
PGSC0003DMG400017787 Solanum tuberosum PGSC0003DMG400017787 I 0.649
Solyc03g034110.2 Solanum lycopersicum Solyc03g034110.2 I 0.649
ATHB22 Arabidopsis lyrata Al_scaffold_0004_2163 I 0.645
Solyc03g034130.2 Solanum lycopersicum Solyc03g034130.2 I 0.643
PGSC0003DMG400017776 Solanum tuberosum PGSC0003DMG400017776 I 0.639
Eucgr.A01575 Eucalyptus grandis Eucgr.A01575 I 0.639
Aquca_009_01021 Aquilegia coerulea Aquca_009_01021 I 0.637
AMTR_s00027p00144540 Amborella trichopoda AMTR_s00027p00144540 I 0.632
GSMUA_Achr6G10660_001 Musa acuminata GSMUA_Achr6G10660_001 I 0.628
VIT_18s0001g06430 Vitis vinifera VIT_18s0001g06430 I 0.628
HAT7 Arabidopsis thaliana AT5G15150 I 0.621
Bo2g012410 Brassica oleracea Bo2g012410 I 0.621
Bo3g010120 Brassica oleracea Bo3g010120 I 0.621
Bo4g100070 Brassica oleracea Bo4g100070 I 0.621
Bo9g165360 Brassica oleracea Bo9g165360 I 0.621
Bra006285 Brassica rapa Bra006285 I 0.621
Bra008717 Brassica rapa Bra008717 I 0.621
Bra023506 Brassica rapa Bra023506 I 0.621
ATHB-3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001192 I 0.621
GLYMA09G37410 Glycine max GLYMA09G37410 I 0.621
GLYMA18G49290 Glycine max GLYMA18G49290 I 0.621
GLYMA19G02490 Glycine max GLYMA19G02490 I 0.621
GSMUA_Achr10G18860_001 Musa acuminata GSMUA_Achr10G18860_001 I 0.621
GSMUA_Achr4G00550_001 Musa acuminata GSMUA_Achr4G00550_001 I 0.621
GSMUA_Achr6G36450_001 Musa acuminata GSMUA_Achr6G36450_001 I 0.621
MTR_6g011610 Medicago truncatula MTR_6g011610 I 0.621
POPTR_0017s11800 Populus trichocarpa POPTR_0017s11800 I 0.621
PRUPE_ppa020465mg Prunus persica PRUPE_ppa020465mg I 0.621
TCM_018470 Theobroma cacao TCM_018470 I 0.621
Ca_10527 Cicer arietinum Ca_10527 I 0.621
Cla010510 Citrullus lanatus Cla010510 I 0.621
Pm015861 Prunus mume Pm015861 I 0.621
29822.m003500 Ricinus communis 29822.m003500 I 0.621
cassava13234.valid.m1 Manihot esculenta cassava13234.valid.m1 I 0.621
cassava39955.m1 Manihot esculenta cassava39955.m1 I 0.621
Cucsa.158420 Cucumis sativus Cucsa.158420 I 0.621
Bostr.2902s0249 Boechera stricta Bostr.2902s0249 I 0.621
Cagra.1036s0042 Capsella grandiflora Cagra.1036s0042 I 0.621
Carubv10001498m.g Capsella rubella Carubv10001498m.g I 0.621
Ciclev10012352m.g Citrus clementina Ciclev10012352m.g I 0.621
evm.TU.supercontig_14.18 Carica papaya evm.TU.supercontig_14.18 I 0.621
gene28322-v1.0-hybrid Fragaria vesca gene28322-v1.0-hybrid I 0.621
Gorai.001G256300 Gossypium raimondii Gorai.001G256300 I 0.621
Gorai.006G022100 Gossypium raimondii Gorai.006G022100 I 0.621
MDP0000124827 Malus domestica MDP0000124827 I 0.621
MDP0000737128 Malus domestica MDP0000737128 I 0.621
orange1.1g041877m.g Citrus sinensis orange1.1g041877m.g I 0.621
SapurV1A.1260s0050 Salix purpurea SapurV1A.1260s0050 I 0.621
SapurV1A.2065s0030 Salix purpurea SapurV1A.2065s0030 I 0.621
Thhalv10014157m.g Eutrema salsugineum Thhalv10014157m.g I 0.621
PK20392.1 Cannabis sativa PK20392.1 D 0.621
chr2.LjT39I02.10.nc Lotus japonicus chr2.LjT39I02.10.nc I 0.621
BRADI4G35910 Brachypodium distachyon BRADI4G35910 I 0.615
Pavir.Hb01447 Panicum virgatum Pavir.Hb01447 I 0.615
PGSC0003DMG400018509 Solanum tuberosum PGSC0003DMG400018509 I 0.614
Solyc03g082550.2 Solanum lycopersicum Solyc03g082550.2 I 0.614
PGSC0003DMG400005472 Solanum tuberosum PGSC0003DMG400005472 I 0.613
Solyc06g053220.2 Solanum lycopersicum Solyc06g053220.2 I 0.613
Eucgr.I01934 Eucalyptus grandis Eucgr.I01934 I 0.613
MTR_1g061660 Medicago truncatula MTR_1g061660 I 0.609
Bra014417 Brassica rapa Bra014417 I 0.606
Eucgr.I02255 Eucalyptus grandis Eucgr.I02255 I 0.603
ATHB-20 Arabidopsis thaliana AT3G01220 D 0.601
Bo1g158730 Brassica oleracea Bo1g158730 I 0.601
Bra039135 Brassica rapa Bra039135 I 0.601
ATHB20 Arabidopsis lyrata scaffold_300109.1 I 0.601
Bostr.1460s0094 Boechera stricta Bostr.1460s0094 I 0.601
Cagra.1390s0021 Capsella grandiflora Cagra.1390s0021 I 0.601
Carubv10014214m.g Capsella rubella Carubv10014214m.g I 0.601
Thhalv10021334m.g Eutrema salsugineum Thhalv10021334m.g I 0.601