Solyc06g053220.2 (Solanum lycopersicum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Solyc06g053220.2 T223590_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.715 0.685
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.715 0.685
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.695 0.648
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.695 0.648
ATHB-22
M02041_2.00 		Arabidopsis thaliana
NNATAATWWWNNN
NNNWWWATTATNN		 PBM
Weirauch et al.(2014)
pTH5883 		0.649 0.556
ATHB-12
M00865_2.00 		Arabidopsis thaliana
NNNNNNNN
NNNNNNNN		 PBM
Franco-Zorrilla et al.(2014)
ATHB12 		0.622 0.704
ATHB-12
M02045_2.00 		Arabidopsis thaliana
BHWWWWWWDV
BHWWWWWWDV		 PBM
Weirauch et al.(2014)
pTH7207 		0.622 0.704
ATHB-51
M00867_2.00 		Arabidopsis thaliana
ATWATKNN
NNMATWAT		 PBM
Franco-Zorrilla et al.(2014)
ATHB51 		0.618 0.537
ATHB-51
M06927_2.00 		Arabidopsis thaliana
DNCAATAATTGAD
HTCAATTATTGNH		 Dap-seq
OMalley et al.(2016)
LMI1_col_a 		0.618 0.537
ATHB-51
M06928_2.00 		Arabidopsis thaliana
NDNCAATAATTGA
TCAATTATTGNHN		 Dap-seq
OMalley et al.(2016)
LMI1_colamp_a 		0.618 0.537
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc06g053220.2.1 Homeodomain 21 74

Links

Other Homeodomain family TFs
Other Solanum lycopersicum TFs

153 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PGSC0003DMG400005472 Solanum tuberosum PGSC0003DMG400005472 I 0.859
Eucgr.I02255 Eucalyptus grandis Eucgr.I02255 I 0.737
Solyc03g082550.2 Solanum lycopersicum Solyc03g082550.2 I 0.724
PGSC0003DMG400018509 Solanum tuberosum PGSC0003DMG400018509 I 0.724
GLYMA18G49290 Glycine max GLYMA18G49290 I 0.720
GLYMA09G37410 Glycine max GLYMA09G37410 I 0.715
PRUPE_ppa020465mg Prunus persica PRUPE_ppa020465mg I 0.715
MTR_6g011610 Medicago truncatula MTR_6g011610 I 0.715
Cucsa.158420 Cucumis sativus Cucsa.158420 I 0.715
POPTR_0017s11800 Populus trichocarpa POPTR_0017s11800 I 0.715
cassava39955.m1 Manihot esculenta cassava39955.m1 I 0.715
Cla010510 Citrullus lanatus Cla010510 I 0.715
TCM_018470 Theobroma cacao TCM_018470 I 0.715
Pm015861 Prunus mume Pm015861 I 0.715
29822.m003500 Ricinus communis 29822.m003500 I 0.715
cassava13234.valid.m1 Manihot esculenta cassava13234.valid.m1 I 0.715
Ciclev10012352m.g Citrus clementina Ciclev10012352m.g I 0.715
Eucgr.I01934 Eucalyptus grandis Eucgr.I01934 I 0.715
MDP0000737128 Malus domestica MDP0000737128 I 0.715
MDP0000124827 Malus domestica MDP0000124827 I 0.715
orange1.1g041877m.g Citrus sinensis orange1.1g041877m.g I 0.715
SapurV1A.1260s0050 Salix purpurea SapurV1A.1260s0050 I 0.715
SapurV1A.2065s0030 Salix purpurea SapurV1A.2065s0030 I 0.715
GLYMA19G02490 Glycine max GLYMA19G02490 I 0.715
Gorai.006G022100 Gossypium raimondii Gorai.006G022100 I 0.715
Ca_10527 Cicer arietinum Ca_10527 I 0.715
PK20392.1 Cannabis sativa PK20392.1 D 0.715
chr2.LjT39I02.10.nc Lotus japonicus chr2.LjT39I02.10.nc I 0.715
evm.TU.supercontig_14.18 Carica papaya evm.TU.supercontig_14.18 I 0.715
gene28322-v1.0-hybrid Fragaria vesca gene28322-v1.0-hybrid I 0.715
GSMUA_Achr4G00550_001 Musa acuminata GSMUA_Achr4G00550_001 I 0.714
GSMUA_Achr10G18860_001 Musa acuminata GSMUA_Achr10G18860_001 I 0.714
Bra008717 Brassica rapa Bra008717 I 0.714
Bo3g010120 Brassica oleracea Bo3g010120 I 0.714
Bo2g012410 Brassica oleracea Bo2g012410 I 0.714
HAT7 Arabidopsis thaliana AT5G15150 I 0.714
Thhalv10014157m.g Eutrema salsugineum Thhalv10014157m.g I 0.714
Bo9g165360 Brassica oleracea Bo9g165360 I 0.714
Bra006285 Brassica rapa Bra006285 I 0.714
Bra023506 Brassica rapa Bra023506 I 0.714
Bostr.2902s0249 Boechera stricta Bostr.2902s0249 I 0.714
Cagra.1036s0042 Capsella grandiflora Cagra.1036s0042 I 0.714
Carubv10001498m.g Capsella rubella Carubv10001498m.g I 0.714
ATHB-3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001192 I 0.714
VIT_18s0001g06430 Vitis vinifera VIT_18s0001g06430 I 0.711
GSMUA_Achr6G10660_001 Musa acuminata GSMUA_Achr6G10660_001 I 0.708
Gorai.001G256300 Gossypium raimondii Gorai.001G256300 I 0.705
Bo1g158730 Brassica oleracea Bo1g158730 I 0.695
Thhalv10021334m.g Eutrema salsugineum Thhalv10021334m.g I 0.695
ATHB20 Arabidopsis lyrata scaffold_300109.1 I 0.695
ATHB-20 Arabidopsis thaliana AT3G01220 D 0.695
Bra039135 Brassica rapa Bra039135 I 0.695
Bostr.1460s0094 Boechera stricta Bostr.1460s0094 I 0.695
Cagra.1390s0021 Capsella grandiflora Cagra.1390s0021 I 0.695
Carubv10014214m.g Capsella rubella Carubv10014214m.g I 0.695
GSMUA_Achr6G36450_001 Musa acuminata GSMUA_Achr6G36450_001 I 0.692
evm.TU.supercontig_80.1 Carica papaya evm.TU.supercontig_80.1 I 0.689
GLYMA13G05270 Glycine max GLYMA13G05270 I 0.682
Bo12274s010 Brassica oleracea Bo12274s010 I 0.679
GLYMA12G18720 Glycine max GLYMA12G18720 I 0.669
mgf019824m Mimulus guttatus mgf019824m I 0.668
GLYMA06G35050 Glycine max GLYMA06G35050 I 0.657
orange1.1g035661m.g Citrus sinensis orange1.1g035661m.g I 0.653
Ciclev10009522m.g Citrus clementina Ciclev10009522m.g I 0.653
ATHB-22 Arabidopsis thaliana AT2G36610 D 0.649
Carubv10027280m.g Capsella rubella Carubv10027280m.g I 0.648
Cagra.4622s0007 Capsella grandiflora Cagra.4622s0007 I 0.648
AMTR_s00027p00144540 Amborella trichopoda AMTR_s00027p00144540 I 0.644
Gorai.012G055400 Gossypium raimondii Gorai.012G055400 I 0.639
BRADI4G35910 Brachypodium distachyon BRADI4G35910 I 0.638
Lus10013103.g Linum usitatissimum Lus10013103.g I 0.637
POPTR_0011s11510 Populus trichocarpa POPTR_0011s11510 I 0.637
Pm011328 Prunus mume Pm011328 I 0.637
Gorai.002G067100 Gossypium raimondii Gorai.002G067100 I 0.637
VIT_19s0014g02110 Vitis vinifera VIT_19s0014g02110 I 0.637
Bo4g100070 Brassica oleracea Bo4g100070 I 0.637
Lus10003492.g Linum usitatissimum Lus10003492.g I 0.637
MDP0000146339 Malus domestica MDP0000146339 I 0.637
TCM_031644 Theobroma cacao TCM_031644 I 0.637
MDP0000909160 Malus domestica MDP0000909160 I 0.637
SapurV1A.0207s0080 Salix purpurea SapurV1A.0207s0080 I 0.637
POPTR_0001s40540 Populus trichocarpa POPTR_0001s40540 I 0.637
PRUPE_ppa017711mg Prunus persica PRUPE_ppa017711mg I 0.637
MTR_1g061660 Medicago truncatula MTR_1g061660 I 0.636
Bra028820 Brassica rapa Bra028820 I 0.630
Bo2g005230 Brassica oleracea Bo2g005230 I 0.630
PGSC0003DMG400002692 Solanum tuberosum PGSC0003DMG400002692 I 0.629
Solyc09g008810.2 Solanum lycopersicum Solyc09g008810.2 I 0.629
mgf022748m Mimulus guttatus mgf022748m I 0.629
Cucsa.378700 Cucumis sativus Cucsa.378700 I 0.628
Cla018017 Citrullus lanatus Cla018017 I 0.628
PGSC0003DMG400031777 Solanum tuberosum PGSC0003DMG400031777 I 0.626
VIT_16s0098g01170 Vitis vinifera VIT_16s0098g01170 I 0.624
LjSGA_022706.2 Lotus japonicus LjSGA_022706.2 I 0.622
Bra014417 Brassica rapa Bra014417 I 0.622
Cagra.0483s0055 Capsella grandiflora Cagra.0483s0055 I 0.622
Bo8g097390 Brassica oleracea Bo8g097390 I 0.622
Bostr.13158s0194 Boechera stricta Bostr.13158s0194 I 0.622
ATHB-12 Arabidopsis lyrata fgenesh2_kg.5__2686__AT3G61890.1 I 0.622
Carubv10017952m.g Capsella rubella Carubv10017952m.g I 0.622
Bra007637 Brassica rapa Bra007637 I 0.622
ATHB-12 Arabidopsis thaliana AT3G61890 D 0.622
Eucgr.A01575 Eucalyptus grandis Eucgr.A01575 I 0.621
PGSC0003DMG400017776 Solanum tuberosum PGSC0003DMG400017776 I 0.620
VIT_08s0007g04200 Vitis vinifera VIT_08s0007g04200 I 0.620
Solyc03g034110.2 Solanum lycopersicum Solyc03g034110.2 I 0.620
PGSC0003DMG400017787 Solanum tuberosum PGSC0003DMG400017787 I 0.620
PGSC0003DMG400017775 Solanum tuberosum PGSC0003DMG400017775 I 0.620
Al_scaffold_0006_290 Arabidopsis lyrata Al_scaffold_0006_290 I 0.619
Thhalv10014547m.g Eutrema salsugineum Thhalv10014547m.g I 0.618
ATHB-51 Arabidopsis thaliana AT5G03790 D 0.618
Bo9g181720 Brassica oleracea Bo9g181720 I 0.618
gene24976-v1.0-hybrid Fragaria vesca gene24976-v1.0-hybrid I 0.618
Bo3g002560 Brassica oleracea Bo3g002560 I 0.618
Bostr.2128s0071 Boechera stricta Bostr.2128s0071 I 0.618
Bostr.2128s0069 Boechera stricta Bostr.2128s0069 I 0.618
Cucsa.125070 Cucumis sativus Cucsa.125070 I 0.618
Cla018641 Citrullus lanatus Cla018641 I 0.618
Cagra.0154s0025 Capsella grandiflora Cagra.0154s0025 I 0.618
ATHB51 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000249 I 0.618
Carubv10002440m.g Capsella rubella Carubv10002440m.g I 0.618
Bra009510 Brassica rapa Bra009510 I 0.618
Thhalv10014905m.g Eutrema salsugineum Thhalv10014905m.g I 0.616
Bo2g042250 Brassica oleracea Bo2g042250 I 0.616
Bostr.26833s0878 Boechera stricta Bostr.26833s0878 I 0.616
ATHB52 Arabidopsis lyrata fgenesh2_kg.8__1293__AT5G53980.1 I 0.616
ATHB-52 Arabidopsis thaliana AT5G53980 I 0.616
Bra022687 Brassica rapa Bra022687 I 0.616
mgf013301m Mimulus guttatus mgf013301m I 0.615
Solyc03g034130.2 Solanum lycopersicum Solyc03g034130.2 I 0.614
Carubv10002831m.g Capsella rubella Carubv10002831m.g I 0.613
Cagra.0154s0024 Capsella grandiflora Cagra.0154s0024 I 0.612
Si030983m.g Setaria italica Si030983m.g I 0.611
Pavir.Ba01249 Panicum virgatum Pavir.Ba01249 I 0.611
Pavir.Bb02633 Panicum virgatum Pavir.Bb02633 I 0.611
GRMZM2G041462 Zea mays GRMZM2G041462 I 0.611
Sb02g030660 Sorghum bicolor Sb02g030660 I 0.611
GRMZM2G034113 Zea mays GRMZM2G034113 I 0.610
Ca_17608 Cicer arietinum Ca_17608 I 0.609
MTR_8g026960 Medicago truncatula MTR_8g026960 I 0.609
Solyc03g034120.2 Solanum lycopersicum Solyc03g034120.2 I 0.609
OBART10G09370 Oryza barthii OBART10G09370 I 0.608
PK15535.1 Cannabis sativa PK15535.1 I 0.608
gene30097-v1.0-hybrid Fragaria vesca gene30097-v1.0-hybrid I 0.608
Eucgr.A01421 Eucalyptus grandis Eucgr.A01421 I 0.606
VIT_10s0003g00380 Vitis vinifera VIT_10s0003g00380 I 0.605
Thhalv10006221m.g Eutrema salsugineum Thhalv10006221m.g I 0.605
gene18656-v1.0-hybrid Fragaria vesca gene18656-v1.0-hybrid I 0.603
Pm018314 Prunus mume Pm018314 I 0.603
Ciclev10016895m.g Citrus clementina Ciclev10016895m.g I 0.603
PRUPE_ppa010647mg Prunus persica PRUPE_ppa010647mg I 0.603
MDP0000316497 Malus domestica MDP0000316497 I 0.603
Bra018155 Brassica rapa Bra018155 I 0.602