Bra028820 (Brassica rapa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Bra028820 T205157_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-51
M00867_2.00 		Arabidopsis thaliana
ATWATKNN
NNMATWAT		 PBM
Franco-Zorrilla et al.(2014)
ATHB51 		0.818 0.911
ATHB-51
M06927_2.00 		Arabidopsis thaliana
DNCAATAATTGAD
HTCAATTATTGNH		 Dap-seq
OMalley et al.(2016)
LMI1_col_a 		0.818 0.911
ATHB-51
M06928_2.00 		Arabidopsis thaliana
NDNCAATAATTGA
TCAATTATTGNHN		 Dap-seq
OMalley et al.(2016)
LMI1_colamp_a 		0.818 0.911
ATHB-22
M02041_2.00 		Arabidopsis thaliana
NNATAATWWWNNN
NNNWWWATTATNN		 PBM
Weirauch et al.(2014)
pTH5883 		0.767 0.696
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.711 0.589
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.711 0.589
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.691 0.589
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.691 0.589
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra028820.1-P Homeodomain 73 128

Links

Other Homeodomain family TFs
Other Brassica rapa TFs

239 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo2g005230 Brassica oleracea Bo2g005230 I 0.867
Bo3g002560 Brassica oleracea Bo3g002560 I 0.850
ATHB-51 Arabidopsis thaliana AT5G03790 D 0.818
Bo9g181720 Brassica oleracea Bo9g181720 I 0.818
Bra009510 Brassica rapa Bra009510 I 0.818
ATHB51 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000249 I 0.818
Bostr.2128s0071 Boechera stricta Bostr.2128s0071 I 0.818
Cagra.0154s0025 Capsella grandiflora Cagra.0154s0025 I 0.818
Carubv10002440m.g Capsella rubella Carubv10002440m.g I 0.818
Thhalv10014547m.g Eutrema salsugineum Thhalv10014547m.g I 0.818
Cla018017 Citrullus lanatus Cla018017 I 0.807
Cucsa.378700 Cucumis sativus Cucsa.378700 I 0.807
PGSC0003DMG400002692 Solanum tuberosum PGSC0003DMG400002692 I 0.805
Solyc09g008810.2 Solanum lycopersicum Solyc09g008810.2 I 0.805
mgf019824m Mimulus guttatus mgf019824m I 0.795
gene30097-v1.0-hybrid Fragaria vesca gene30097-v1.0-hybrid I 0.783
PK15535.1 Cannabis sativa PK15535.1 I 0.783
mgf022748m Mimulus guttatus mgf022748m I 0.779
POPTR_0006s11890 Populus trichocarpa POPTR_0006s11890 I 0.775
29815.m000499 Ricinus communis 29815.m000499 I 0.775
cassava14646.m1 Manihot esculenta cassava14646.m1 I 0.775
Gorai.002G244200 Gossypium raimondii Gorai.002G244200 I 0.775
MDP0000119544 Malus domestica MDP0000119544 I 0.774
MDP0000134241 Malus domestica MDP0000134241 I 0.774
MDP0000738604 Malus domestica MDP0000738604 I 0.774
PRUPE_ppa015952mg Prunus persica PRUPE_ppa015952mg I 0.771
TCM_022391 Theobroma cacao TCM_022391 I 0.771
Pm026270 Prunus mume Pm026270 I 0.771
cassava34082.m1 Manihot esculenta cassava34082.m1 I 0.771
evm.TU.supercontig_5.106 Carica papaya evm.TU.supercontig_5.106 I 0.771
Gorai.009G409600 Gossypium raimondii Gorai.009G409600 I 0.771
Lus10008641.g Linum usitatissimum Lus10008641.g I 0.771
Lus10035583.g Linum usitatissimum Lus10035583.g I 0.771
Gorai.002G244000 Gossypium raimondii Gorai.002G244000 I 0.770
ATHB-22 Arabidopsis thaliana AT2G36610 D 0.767
Bo4g034490 Brassica oleracea Bo4g034490 I 0.764
Bra005259 Brassica rapa Bra005259 I 0.764
Carubv10003464m.g Capsella rubella Carubv10003464m.g I 0.764
SapurV1A.0226s0110 Salix purpurea SapurV1A.0226s0110 I 0.762
Cagra.0463s0004 Capsella grandiflora Cagra.0463s0004 I 0.754
GLYMA10G07440 Glycine max GLYMA10G07440 I 0.753
GLYMA13G21330 Glycine max GLYMA13G21330 I 0.753
Thhalv10017567m.g Eutrema salsugineum Thhalv10017567m.g I 0.751
LjSGA_022706.2 Lotus japonicus LjSGA_022706.2 I 0.749
VIT_08s0007g04200 Vitis vinifera VIT_08s0007g04200 I 0.748
Cla018641 Citrullus lanatus Cla018641 I 0.744
Cucsa.125070 Cucumis sativus Cucsa.125070 I 0.744
Ciclev10012525m.g Citrus clementina Ciclev10012525m.g I 0.743
orange1.1g040769m.g Citrus sinensis orange1.1g040769m.g I 0.743
Bostr.23794s0432 Boechera stricta Bostr.23794s0432 I 0.740
Cagra.0228s0052 Capsella grandiflora Cagra.0228s0052 I 0.740
Carubv10024148m.g Capsella rubella Carubv10024148m.g I 0.740
Thhalv10015784m.g Eutrema salsugineum Thhalv10015784m.g I 0.740
ATHB22 Arabidopsis lyrata Al_scaffold_0004_2163 I 0.726
Gorai.001G256300 Gossypium raimondii Gorai.001G256300 I 0.723
Eucgr.A01575 Eucalyptus grandis Eucgr.A01575 I 0.721
HAT7 Arabidopsis thaliana AT5G15150 I 0.711
Bo2g012410 Brassica oleracea Bo2g012410 I 0.711
Bo3g010120 Brassica oleracea Bo3g010120 I 0.711
Bo9g165360 Brassica oleracea Bo9g165360 I 0.711
Bra006285 Brassica rapa Bra006285 I 0.711
Bra008717 Brassica rapa Bra008717 I 0.711
Bra023506 Brassica rapa Bra023506 I 0.711
ATHB-3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001192 I 0.711
GLYMA09G37410 Glycine max GLYMA09G37410 I 0.711
GLYMA18G49290 Glycine max GLYMA18G49290 I 0.711
GLYMA19G02490 Glycine max GLYMA19G02490 I 0.711
GSMUA_Achr10G18860_001 Musa acuminata GSMUA_Achr10G18860_001 I 0.711
GSMUA_Achr4G00550_001 Musa acuminata GSMUA_Achr4G00550_001 I 0.711
GSMUA_Achr6G36450_001 Musa acuminata GSMUA_Achr6G36450_001 I 0.711
MTR_6g011610 Medicago truncatula MTR_6g011610 I 0.711
POPTR_0017s11800 Populus trichocarpa POPTR_0017s11800 I 0.711
PRUPE_ppa020465mg Prunus persica PRUPE_ppa020465mg I 0.711
TCM_018470 Theobroma cacao TCM_018470 I 0.711
Ca_10527 Cicer arietinum Ca_10527 I 0.711
Cla010510 Citrullus lanatus Cla010510 I 0.711
Pm015861 Prunus mume Pm015861 I 0.711
29822.m003500 Ricinus communis 29822.m003500 I 0.711
cassava13234.valid.m1 Manihot esculenta cassava13234.valid.m1 I 0.711
cassava39955.m1 Manihot esculenta cassava39955.m1 I 0.711
Cucsa.158420 Cucumis sativus Cucsa.158420 I 0.711
Bostr.2902s0249 Boechera stricta Bostr.2902s0249 I 0.711
Cagra.1036s0042 Capsella grandiflora Cagra.1036s0042 I 0.711
Carubv10001498m.g Capsella rubella Carubv10001498m.g I 0.711
Ciclev10012352m.g Citrus clementina Ciclev10012352m.g I 0.711
evm.TU.supercontig_14.18 Carica papaya evm.TU.supercontig_14.18 I 0.711
gene28322-v1.0-hybrid Fragaria vesca gene28322-v1.0-hybrid I 0.711
Gorai.006G022100 Gossypium raimondii Gorai.006G022100 I 0.711
MDP0000124827 Malus domestica MDP0000124827 I 0.711
MDP0000737128 Malus domestica MDP0000737128 I 0.711
orange1.1g041877m.g Citrus sinensis orange1.1g041877m.g I 0.711
SapurV1A.1260s0050 Salix purpurea SapurV1A.1260s0050 I 0.711
SapurV1A.2065s0030 Salix purpurea SapurV1A.2065s0030 I 0.711
Thhalv10014157m.g Eutrema salsugineum Thhalv10014157m.g I 0.711
PK20392.1 Cannabis sativa PK20392.1 D 0.711
chr2.LjT39I02.10.nc Lotus japonicus chr2.LjT39I02.10.nc I 0.711
VIT_18s0001g06430 Vitis vinifera VIT_18s0001g06430 I 0.706
Al_scaffold_0006_290 Arabidopsis lyrata Al_scaffold_0006_290 I 0.705
GSMUA_Achr6G10660_001 Musa acuminata GSMUA_Achr6G10660_001 I 0.705
Bostr.2128s0069 Boechera stricta Bostr.2128s0069 I 0.703
Eucgr.I01934 Eucalyptus grandis Eucgr.I01934 I 0.703
Aquca_009_01021 Aquilegia coerulea Aquca_009_01021 I 0.693
BRADI4G35910 Brachypodium distachyon BRADI4G35910 I 0.692
Eucgr.I02255 Eucalyptus grandis Eucgr.I02255 I 0.692
ATHB-20 Arabidopsis thaliana AT3G01220 D 0.691
Bo1g158730 Brassica oleracea Bo1g158730 I 0.691
Bra039135 Brassica rapa Bra039135 I 0.691
ATHB20 Arabidopsis lyrata scaffold_300109.1 I 0.691
Bostr.1460s0094 Boechera stricta Bostr.1460s0094 I 0.691
Cagra.1390s0021 Capsella grandiflora Cagra.1390s0021 I 0.691
Carubv10014214m.g Capsella rubella Carubv10014214m.g I 0.691
Thhalv10021334m.g Eutrema salsugineum Thhalv10021334m.g I 0.691
MTR_1g061660 Medicago truncatula MTR_1g061660 I 0.690
Cagra.0154s0024 Capsella grandiflora Cagra.0154s0024 I 0.690
Carubv10002831m.g Capsella rubella Carubv10002831m.g I 0.689
Bo12274s010 Brassica oleracea Bo12274s010 I 0.687
Cagra.4622s0007 Capsella grandiflora Cagra.4622s0007 I 0.683
Carubv10027280m.g Capsella rubella Carubv10027280m.g I 0.683
evm.TU.supercontig_80.1 Carica papaya evm.TU.supercontig_80.1 I 0.682
GLYMA13G05270 Glycine max GLYMA13G05270 I 0.678
Ca_20151 Cicer arietinum Ca_20151 I 0.677
SapurV1A.3101s0010 Salix purpurea SapurV1A.3101s0010 I 0.669
AMTR_s00027p00144540 Amborella trichopoda AMTR_s00027p00144540 I 0.665
POPTR_0017s04820 Populus trichocarpa POPTR_0017s04820 I 0.665
29983.m003123 Ricinus communis 29983.m003123 I 0.665
SapurV1A.2554s0010 Salix purpurea SapurV1A.2554s0010 I 0.665
GRMZM2G034113 Zea mays GRMZM2G034113 I 0.661
GRMZM2G041462 Zea mays GRMZM2G041462 I 0.661
Sb02g030660 Sorghum bicolor Sb02g030660 I 0.661
Si030983m.g Setaria italica Si030983m.g I 0.661
Pavir.Ba01249 Panicum virgatum Pavir.Ba01249 I 0.661
Pavir.Bb02633 Panicum virgatum Pavir.Bb02633 I 0.661
Eucgr.A01421 Eucalyptus grandis Eucgr.A01421 I 0.658
PGSC0003DMG400031777 Solanum tuberosum PGSC0003DMG400031777 I 0.656
Solyc02g077590.1 Solanum lycopersicum Solyc02g077590.1 I 0.656
Ciclev10009522m.g Citrus clementina Ciclev10009522m.g I 0.655
orange1.1g035661m.g Citrus sinensis orange1.1g035661m.g I 0.655
MTR_7g103340 Medicago truncatula MTR_7g103340 I 0.654
PRUPE_ppa010647mg Prunus persica PRUPE_ppa010647mg I 0.654
Pm018314 Prunus mume Pm018314 I 0.654
gene18656-v1.0-hybrid Fragaria vesca gene18656-v1.0-hybrid I 0.654
ATHB-52 Arabidopsis thaliana AT5G53980 I 0.652
Bo2g042250 Brassica oleracea Bo2g042250 I 0.652
Bra022687 Brassica rapa Bra022687 I 0.652
ATHB52 Arabidopsis lyrata fgenesh2_kg.8__1293__AT5G53980.1 I 0.652
Bostr.26833s0878 Boechera stricta Bostr.26833s0878 I 0.652
Thhalv10014905m.g Eutrema salsugineum Thhalv10014905m.g I 0.652
GLYMA19G37380 Glycine max GLYMA19G37380 I 0.650
Ca_00750 Cicer arietinum Ca_00750 I 0.650
GLYMA06G35050 Glycine max GLYMA06G35050 I 0.647
VIT_16s0098g01170 Vitis vinifera VIT_16s0098g01170 I 0.640
Pavir.Hb01447 Panicum virgatum Pavir.Hb01447 I 0.639
SapurV1A.0817s0120 Salix purpurea SapurV1A.0817s0120 I 0.638
VIT_10s0003g00380 Vitis vinifera VIT_10s0003g00380 I 0.635
Gorai.012G055400 Gossypium raimondii Gorai.012G055400 I 0.635
Bo4g100070 Brassica oleracea Bo4g100070 I 0.634
AT1G27045 Arabidopsis thaliana AT1G27045 I 0.632
Solyc06g053220.2 Solanum lycopersicum Solyc06g053220.2 I 0.630
GLYMA03G34710 Glycine max GLYMA03G34710 I 0.628
Gorai.007G206000 Gossypium raimondii Gorai.007G206000 I 0.627
POPTR_0001s40540 Populus trichocarpa POPTR_0001s40540 I 0.626
POPTR_0011s11510 Populus trichocarpa POPTR_0011s11510 I 0.626
PRUPE_ppa017711mg Prunus persica PRUPE_ppa017711mg I 0.626
TCM_031644 Theobroma cacao TCM_031644 I 0.626
VIT_19s0014g02110 Vitis vinifera VIT_19s0014g02110 I 0.626
Pm011328 Prunus mume Pm011328 I 0.626
mgf013301m Mimulus guttatus mgf013301m I 0.626
Gorai.002G067100 Gossypium raimondii Gorai.002G067100 I 0.626
Lus10003492.g Linum usitatissimum Lus10003492.g I 0.626
Lus10013103.g Linum usitatissimum Lus10013103.g I 0.626
SapurV1A.0207s0080 Salix purpurea SapurV1A.0207s0080 I 0.626
POPTR_0007s01370 Populus trichocarpa POPTR_0007s01370 I 0.625
MDP0000146339 Malus domestica MDP0000146339 I 0.624
MDP0000909160 Malus domestica MDP0000909160 I 0.624
PGSC0003DMG400005472 Solanum tuberosum PGSC0003DMG400005472 I 0.623
MDP0000311522 Malus domestica MDP0000311522 I 0.621
Bra014417 Brassica rapa Bra014417 I 0.619
GSMUA_Achr9G14960_001 Musa acuminata GSMUA_Achr9G14960_001 I 0.619
Gorai.007G051100 Gossypium raimondii Gorai.007G051100 I 0.619
PGSC0003DMG400021278 Solanum tuberosum PGSC0003DMG400021278 I 0.616
AC233899.1_FG004 Zea mays AC233899.1_FG004 I 0.611
ATHB-23 Arabidopsis thaliana AT1G26960 I 0.611
Bo8g076330 Brassica oleracea Bo8g076330 I 0.611
Bra016300 Brassica rapa Bra016300 I 0.611
Bra018155 Brassica rapa Bra018155 I 0.611
AtHB23 Arabidopsis lyrata fgenesh2_kg.1__2657__AT1G26960.1 I 0.611
Bostr.12659s0299 Boechera stricta Bostr.12659s0299 I 0.611
Cagra.1150s0002 Capsella grandiflora Cagra.1150s0002 I 0.611
Carubv10010076m.g Capsella rubella Carubv10010076m.g I 0.611
Thhalv10008487m.g Eutrema salsugineum Thhalv10008487m.g I 0.611
Bo9g181710 Brassica oleracea Bo9g181710 I 0.607
PGSC0003DMG400018509 Solanum tuberosum PGSC0003DMG400018509 I 0.607
Solyc03g082550.2 Solanum lycopersicum Solyc03g082550.2 I 0.607
GRMZM2G056600 Zea mays GRMZM2G056600 I 0.606
Solyc07g062790.1 Solanum lycopersicum Solyc07g062790.1 I 0.605
gene24976-v1.0-hybrid Fragaria vesca gene24976-v1.0-hybrid I 0.605
PGSC0003DMG402012439 Solanum tuberosum PGSC0003DMG402012439 I 0.603
HOX20 Oryza indica BGIOSGA026788 I 0.602
HOX4 Oryza indica BGIOSGA030941 I 0.602
BRADI4G32737 Brachypodium distachyon BRADI4G32737 I 0.602
GRMZM2G041127 Zea mays GRMZM2G041127 I 0.602
GSMUA_Achr2G14750_001 Musa acuminata GSMUA_Achr2G14750_001 I 0.602
GSMUA_Achr3G06620_001 Musa acuminata GSMUA_Achr3G06620_001 I 0.602
GSMUA_Achr7G11760_001 Musa acuminata GSMUA_Achr7G11760_001 I 0.602
LPERR08G15240 Leersia perrieri LPERR08G15240 I 0.602
LPERR09G09790 Leersia perrieri LPERR09G09790 I 0.602
OB08G25440 Oryza brachyantha OB08G25440 I 0.602
OB09G20040 Oryza brachyantha OB09G20040 I 0.602
OBART08G18330 Oryza barthii OBART08G18330 I 0.602
OGLUM08G19260 Oryza glumaepatula OGLUM08G19260 I 0.602
OGLUM09G14010 Oryza glumaepatula OGLUM09G14010 I 0.602
OLONG_010656 Oryza longistaminata OLONG_010656 I 0.602
OMERI08G14350 Oryza meridionalis OMERI08G14350 I 0.602
ONIVA08G20420 Oryza nivara ONIVA08G20420 I 0.602
ONIVA09G13990 Oryza nivara ONIVA09G13990 I 0.602
OPUNC08G16250 Oryza punctata OPUNC08G16250 I 0.602
OPUNC09G11870 Oryza punctata OPUNC09G11870 I 0.602
ORGLA08G0159100 Oryza glaberrima ORGLA08G0159100 I 0.602
ORGLA09G0102600 Oryza glaberrima ORGLA09G0102600 I 0.602
ORUFI09G14530 Oryza rufipogon ORUFI09G14530 I 0.602
HOX20 Oryza sativa OS08G0481400 I 0.602
HOX4 Oryza sativa OS09G0470500 I 0.602
Sb02g027300 Sorghum bicolor Sb02g027300 I 0.602
Si014231m.g Setaria italica Si014231m.g I 0.602
Si030822m.g Setaria italica Si030822m.g I 0.602
Traes_5BL_5DE02D63E Triticum aestivum Traes_5BL_5DE02D63E I 0.602
Pavir.Fa00633 Panicum virgatum Pavir.Fa00633 I 0.602
Pavir.J20523 Panicum virgatum Pavir.J20523 I 0.602
Pavir.J27155 Panicum virgatum Pavir.J27155 I 0.602
Pavir.J41033 Panicum virgatum Pavir.J41033 I 0.602
Bo5g041500 Brassica oleracea Bo5g041500 I 0.601
Bra024665 Brassica rapa Bra024665 I 0.601
AMTR_s00059p00141510 Amborella trichopoda AMTR_s00059p00141510 I 0.600
PGSC0003DMG400017775 Solanum tuberosum PGSC0003DMG400017775 I 0.599
PGSC0003DMG400017776 Solanum tuberosum PGSC0003DMG400017776 I 0.599
PGSC0003DMG400017787 Solanum tuberosum PGSC0003DMG400017787 I 0.599
Solyc03g034110.2 Solanum lycopersicum Solyc03g034110.2 I 0.599
TCM_000438 Theobroma cacao TCM_000438 I 0.599
MDP0000789571 Malus domestica MDP0000789571 I 0.599