MTR_7g103340 (Medicago truncatula)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 MTR_7g103340 T220854_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-51
M00867_2.00 		Arabidopsis thaliana
ATWATKNN
NNMATWAT		 PBM
Franco-Zorrilla et al.(2014)
ATHB51 		0.670 0.825
ATHB-51
M06927_2.00 		Arabidopsis thaliana
DNCAATAATTGAD
HTCAATTATTGNH		 Dap-seq
OMalley et al.(2016)
LMI1_col_a 		0.670 0.825
ATHB-51
M06928_2.00 		Arabidopsis thaliana
NDNCAATAATTGA
TCAATTATTGNHN		 Dap-seq
OMalley et al.(2016)
LMI1_colamp_a 		0.670 0.825
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.645 0.649
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.645 0.649
ATHB-22
M02041_2.00 		Arabidopsis thaliana
NNATAATWWWNNN
NNNWWWATTATNN		 PBM
Weirauch et al.(2014)
pTH5883 		0.636 0.684
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.625 0.632
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.625 0.632
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KEH24094 Homeodomain 61 117

Links

Other Homeodomain family TFs
Other Medicago truncatula TFs

132 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ca_00750 Cicer arietinum Ca_00750 I 0.861
GLYMA19G37380 Glycine max GLYMA19G37380 I 0.830
GLYMA03G34710 Glycine max GLYMA03G34710 I 0.808
Aquca_009_01021 Aquilegia coerulea Aquca_009_01021 I 0.721
POPTR_0006s11890 Populus trichocarpa POPTR_0006s11890 I 0.713
Cla018017 Citrullus lanatus Cla018017 I 0.713
29815.m000499 Ricinus communis 29815.m000499 I 0.713
Cucsa.378700 Cucumis sativus Cucsa.378700 I 0.713
TCM_022391 Theobroma cacao TCM_022391 I 0.710
cassava34082.m1 Manihot esculenta cassava34082.m1 I 0.709
evm.TU.supercontig_5.106 Carica papaya evm.TU.supercontig_5.106 I 0.709
Gorai.009G409600 Gossypium raimondii Gorai.009G409600 I 0.709
SapurV1A.0226s0110 Salix purpurea SapurV1A.0226s0110 I 0.701
gene30097-v1.0-hybrid Fragaria vesca gene30097-v1.0-hybrid I 0.697
GLYMA10G07440 Glycine max GLYMA10G07440 I 0.688
GLYMA13G21330 Glycine max GLYMA13G21330 I 0.688
VIT_08s0007g04200 Vitis vinifera VIT_08s0007g04200 I 0.685
LjSGA_022706.2 Lotus japonicus LjSGA_022706.2 I 0.684
cassava14646.m1 Manihot esculenta cassava14646.m1 I 0.682
Gorai.002G244200 Gossypium raimondii Gorai.002G244200 I 0.682
Ciclev10012525m.g Citrus clementina Ciclev10012525m.g I 0.681
orange1.1g040769m.g Citrus sinensis orange1.1g040769m.g I 0.681
PGSC0003DMG400002692 Solanum tuberosum PGSC0003DMG400002692 I 0.679
Solyc09g008810.2 Solanum lycopersicum Solyc09g008810.2 I 0.679
MDP0000119544 Malus domestica MDP0000119544 I 0.679
MDP0000134241 Malus domestica MDP0000134241 I 0.679
MDP0000738604 Malus domestica MDP0000738604 I 0.679
PRUPE_ppa015952mg Prunus persica PRUPE_ppa015952mg I 0.678
Gorai.002G244000 Gossypium raimondii Gorai.002G244000 I 0.677
Pm026270 Prunus mume Pm026270 I 0.676
Lus10008641.g Linum usitatissimum Lus10008641.g I 0.676
Lus10035583.g Linum usitatissimum Lus10035583.g I 0.676
MTR_1g061660 Medicago truncatula MTR_1g061660 I 0.673
ATHB-51 Arabidopsis thaliana AT5G03790 D 0.670
Bo9g181720 Brassica oleracea Bo9g181720 I 0.670
Bra009510 Brassica rapa Bra009510 I 0.670
ATHB51 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000249 I 0.670
Bostr.2128s0071 Boechera stricta Bostr.2128s0071 I 0.670
Cagra.0154s0025 Capsella grandiflora Cagra.0154s0025 I 0.670
Carubv10002440m.g Capsella rubella Carubv10002440m.g I 0.670
Thhalv10014547m.g Eutrema salsugineum Thhalv10014547m.g I 0.670
mgf019824m Mimulus guttatus mgf019824m I 0.668
Bo3g002560 Brassica oleracea Bo3g002560 I 0.666
PK15535.1 Cannabis sativa PK15535.1 I 0.664
Thhalv10017567m.g Eutrema salsugineum Thhalv10017567m.g I 0.657
Bo2g005230 Brassica oleracea Bo2g005230 I 0.654
Bra028820 Brassica rapa Bra028820 I 0.654
Ca_20151 Cicer arietinum Ca_20151 I 0.654
VIT_18s0001g06430 Vitis vinifera VIT_18s0001g06430 I 0.653
mgf022748m Mimulus guttatus mgf022748m I 0.653
BRADI4G35910 Brachypodium distachyon BRADI4G35910 I 0.651
GRMZM2G041462 Zea mays GRMZM2G041462 I 0.651
Sb02g030660 Sorghum bicolor Sb02g030660 I 0.651
Si030983m.g Setaria italica Si030983m.g I 0.651
Pavir.Ba01249 Panicum virgatum Pavir.Ba01249 I 0.651
Pavir.Bb02633 Panicum virgatum Pavir.Bb02633 I 0.651
Cla018641 Citrullus lanatus Cla018641 I 0.649
Cucsa.125070 Cucumis sativus Cucsa.125070 I 0.649
Cagra.0463s0004 Capsella grandiflora Cagra.0463s0004 I 0.648
Carubv10003464m.g Capsella rubella Carubv10003464m.g I 0.648
Eucgr.A01421 Eucalyptus grandis Eucgr.A01421 I 0.648
HAT7 Arabidopsis thaliana AT5G15150 I 0.645
Bo2g012410 Brassica oleracea Bo2g012410 I 0.645
Bo3g010120 Brassica oleracea Bo3g010120 I 0.645
Bo9g165360 Brassica oleracea Bo9g165360 I 0.645
Bra006285 Brassica rapa Bra006285 I 0.645
Bra008717 Brassica rapa Bra008717 I 0.645
Bra023506 Brassica rapa Bra023506 I 0.645
ATHB-3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001192 I 0.645
GLYMA09G37410 Glycine max GLYMA09G37410 I 0.645
GLYMA18G49290 Glycine max GLYMA18G49290 I 0.645
GLYMA19G02490 Glycine max GLYMA19G02490 I 0.645
GSMUA_Achr10G18860_001 Musa acuminata GSMUA_Achr10G18860_001 I 0.645
GSMUA_Achr4G00550_001 Musa acuminata GSMUA_Achr4G00550_001 I 0.645
GSMUA_Achr6G36450_001 Musa acuminata GSMUA_Achr6G36450_001 I 0.645
MTR_6g011610 Medicago truncatula MTR_6g011610 I 0.645
POPTR_0017s11800 Populus trichocarpa POPTR_0017s11800 I 0.645
PRUPE_ppa010647mg Prunus persica PRUPE_ppa010647mg I 0.645
PRUPE_ppa020465mg Prunus persica PRUPE_ppa020465mg I 0.645
TCM_018470 Theobroma cacao TCM_018470 I 0.645
Ca_10527 Cicer arietinum Ca_10527 I 0.645
Cla010510 Citrullus lanatus Cla010510 I 0.645
Pm015861 Prunus mume Pm015861 I 0.645
Pm018314 Prunus mume Pm018314 I 0.645
29822.m003500 Ricinus communis 29822.m003500 I 0.645
cassava13234.valid.m1 Manihot esculenta cassava13234.valid.m1 I 0.645
cassava39955.m1 Manihot esculenta cassava39955.m1 I 0.645
Cucsa.158420 Cucumis sativus Cucsa.158420 I 0.645
Bostr.23794s0432 Boechera stricta Bostr.23794s0432 I 0.645
Bostr.2902s0249 Boechera stricta Bostr.2902s0249 I 0.645
Cagra.0228s0052 Capsella grandiflora Cagra.0228s0052 I 0.645
Cagra.1036s0042 Capsella grandiflora Cagra.1036s0042 I 0.645
Carubv10001498m.g Capsella rubella Carubv10001498m.g I 0.645
Carubv10024148m.g Capsella rubella Carubv10024148m.g I 0.645
Ciclev10012352m.g Citrus clementina Ciclev10012352m.g I 0.645
evm.TU.supercontig_14.18 Carica papaya evm.TU.supercontig_14.18 I 0.645
gene18656-v1.0-hybrid Fragaria vesca gene18656-v1.0-hybrid I 0.645
gene28322-v1.0-hybrid Fragaria vesca gene28322-v1.0-hybrid I 0.645
Gorai.001G256300 Gossypium raimondii Gorai.001G256300 I 0.645
Gorai.006G022100 Gossypium raimondii Gorai.006G022100 I 0.645
Gorai.012G055400 Gossypium raimondii Gorai.012G055400 I 0.645
MDP0000124827 Malus domestica MDP0000124827 I 0.645
MDP0000737128 Malus domestica MDP0000737128 I 0.645
orange1.1g041877m.g Citrus sinensis orange1.1g041877m.g I 0.645
SapurV1A.1260s0050 Salix purpurea SapurV1A.1260s0050 I 0.645
SapurV1A.2065s0030 Salix purpurea SapurV1A.2065s0030 I 0.645
Thhalv10014157m.g Eutrema salsugineum Thhalv10014157m.g I 0.645
PK20392.1 Cannabis sativa PK20392.1 D 0.645
chr2.LjT39I02.10.nc Lotus japonicus chr2.LjT39I02.10.nc I 0.645
GSMUA_Achr6G10660_001 Musa acuminata GSMUA_Achr6G10660_001 I 0.639
Eucgr.I01934 Eucalyptus grandis Eucgr.I01934 I 0.637
ATHB-22 Arabidopsis thaliana AT2G36610 D 0.636
Bo4g034490 Brassica oleracea Bo4g034490 I 0.636
Bra005259 Brassica rapa Bra005259 I 0.636
Thhalv10015784m.g Eutrema salsugineum Thhalv10015784m.g I 0.634
AMTR_s00027p00144540 Amborella trichopoda AMTR_s00027p00144540 I 0.632
ATHB22 Arabidopsis lyrata Al_scaffold_0004_2163 I 0.631
ATHB-20 Arabidopsis thaliana AT3G01220 D 0.625
Bo1g158730 Brassica oleracea Bo1g158730 I 0.625
Bra039135 Brassica rapa Bra039135 I 0.625
ATHB20 Arabidopsis lyrata scaffold_300109.1 I 0.625
Bostr.1460s0094 Boechera stricta Bostr.1460s0094 I 0.625
Cagra.1390s0021 Capsella grandiflora Cagra.1390s0021 I 0.625
Carubv10014214m.g Capsella rubella Carubv10014214m.g I 0.625
Thhalv10021334m.g Eutrema salsugineum Thhalv10021334m.g I 0.625
Bo2g042250 Brassica oleracea Bo2g042250 I 0.617
Bra022687 Brassica rapa Bra022687 I 0.617
Bostr.26833s0878 Boechera stricta Bostr.26833s0878 I 0.617
Thhalv10014905m.g Eutrema salsugineum Thhalv10014905m.g I 0.617
GLYMA13G05270 Glycine max GLYMA13G05270 I 0.612
MDP0000311522 Malus domestica MDP0000311522 I 0.612
GRMZM2G034113 Zea mays GRMZM2G034113 I 0.606