MDP0000311522 (Malus domestica)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 MDP0000311522 T229068_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.651 0.632
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.651 0.632
ATHB-12
M00865_2.00 		Arabidopsis thaliana
NNNNNNNN
NNNNNNNN		 PBM
Franco-Zorrilla et al.(2014)
ATHB12 		0.648 0.789
ATHB-12
M02045_2.00 		Arabidopsis thaliana
BHWWWWWWDV
BHWWWWWWDV		 PBM
Weirauch et al.(2014)
pTH7207 		0.648 0.789
ATHB-51
M00867_2.00 		Arabidopsis thaliana
ATWATKNN
NNMATWAT		 PBM
Franco-Zorrilla et al.(2014)
ATHB51 		0.633 0.509
ATHB-51
M06927_2.00 		Arabidopsis thaliana
DNCAATAATTGAD
HTCAATTATTGNH		 Dap-seq
OMalley et al.(2016)
LMI1_col_a 		0.633 0.509
ATHB-51
M06928_2.00 		Arabidopsis thaliana
NDNCAATAATTGA
TCAATTATTGNHN		 Dap-seq
OMalley et al.(2016)
LMI1_colamp_a 		0.633 0.509
Q39944_HELAN
M10802_2.00 		Helianthus annuus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HAHB4_01 		0.633 0.632
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.631 0.579
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.631 0.579
ATHB-22
M02041_2.00 		Arabidopsis thaliana
NNATAATWWWNNN
NNNWWWATTATNN		 PBM
Weirauch et al.(2014)
pTH5883 		0.630 0.509
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000311522 Homeodomain 34 90

Links

Other Homeodomain family TFs
Other Malus domestica TFs

231 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GRMZM2G041462 Zea mays GRMZM2G041462 I 0.812
Sb02g030660 Sorghum bicolor Sb02g030660 I 0.812
Si030983m.g Setaria italica Si030983m.g I 0.812
Pavir.Ba01249 Panicum virgatum Pavir.Ba01249 I 0.812
Pavir.Bb02633 Panicum virgatum Pavir.Bb02633 I 0.812
PRUPE_ppa010647mg Prunus persica PRUPE_ppa010647mg I 0.802
Pm018314 Prunus mume Pm018314 I 0.802
GRMZM2G034113 Zea mays GRMZM2G034113 I 0.771
gene18656-v1.0-hybrid Fragaria vesca gene18656-v1.0-hybrid I 0.769
BRADI4G35910 Brachypodium distachyon BRADI4G35910 I 0.748
Eucgr.A01421 Eucalyptus grandis Eucgr.A01421 I 0.726
MDP0000316497 Malus domestica MDP0000316497 I 0.716
MTR_8g026960 Medicago truncatula MTR_8g026960 I 0.706
Ca_17608 Cicer arietinum Ca_17608 I 0.706
VIT_16s0098g01170 Vitis vinifera VIT_16s0098g01170 I 0.687
Aquca_009_01021 Aquilegia coerulea Aquca_009_01021 I 0.687
GLYMA13G05270 Glycine max GLYMA13G05270 I 0.684
AMTR_s00027p00144540 Amborella trichopoda AMTR_s00027p00144540 I 0.683
PGSC0003DMG400031777 Solanum tuberosum PGSC0003DMG400031777 I 0.676
Solyc02g077590.1 Solanum lycopersicum Solyc02g077590.1 I 0.676
Bo4g100070 Brassica oleracea Bo4g100070 I 0.674
Cla018641 Citrullus lanatus Cla018641 I 0.674
Lus10008641.g Linum usitatissimum Lus10008641.g I 0.674
Lus10035583.g Linum usitatissimum Lus10035583.g I 0.674
Thhalv10006221m.g Eutrema salsugineum Thhalv10006221m.g I 0.674
VIT_19s0014g02110 Vitis vinifera VIT_19s0014g02110 I 0.671
Cagra.0463s0004 Capsella grandiflora Cagra.0463s0004 I 0.666
Carubv10003464m.g Capsella rubella Carubv10003464m.g I 0.666
Ciclev10012525m.g Citrus clementina Ciclev10012525m.g I 0.666
orange1.1g040769m.g Citrus sinensis orange1.1g040769m.g I 0.666
Thhalv10015784m.g Eutrema salsugineum Thhalv10015784m.g I 0.666
PGSC0003DMG402012439 Solanum tuberosum PGSC0003DMG402012439 I 0.665
Solyc07g062790.1 Solanum lycopersicum Solyc07g062790.1 I 0.662
Bostr.23794s0432 Boechera stricta Bostr.23794s0432 I 0.662
Cagra.0228s0052 Capsella grandiflora Cagra.0228s0052 I 0.662
Carubv10024148m.g Capsella rubella Carubv10024148m.g I 0.662
MTR_1g061660 Medicago truncatula MTR_1g061660 I 0.661
Bra014417 Brassica rapa Bra014417 I 0.660
mgf025174m Mimulus guttatus mgf025174m I 0.660
GLYMA06G35050 Glycine max GLYMA06G35050 I 0.659
GSMUA_Achr6G10660_001 Musa acuminata GSMUA_Achr6G10660_001 I 0.659
VIT_18s0001g06430 Vitis vinifera VIT_18s0001g06430 I 0.658
POPTR_0002s17680 Populus trichocarpa POPTR_0002s17680 I 0.657
TCM_005074 Theobroma cacao TCM_005074 I 0.657
27964.m000347 Ricinus communis 27964.m000347 I 0.657
evm.TU.supercontig_144.7 Carica papaya evm.TU.supercontig_144.7 I 0.657
SapurV1A.0003s0740 Salix purpurea SapurV1A.0003s0740 I 0.657
SapurV1A.0162s0050 Salix purpurea SapurV1A.0162s0050 I 0.657
ATHB22 Arabidopsis lyrata Al_scaffold_0004_2163 I 0.656
evm.TU.supercontig_80.1 Carica papaya evm.TU.supercontig_80.1 I 0.656
Ciclev10021877m.g Citrus clementina Ciclev10021877m.g I 0.654
evm.TU.supercontig_3.138 Carica papaya evm.TU.supercontig_3.138 I 0.654
orange1.1g025886m.g Citrus sinensis orange1.1g025886m.g I 0.654
HAT7 Arabidopsis thaliana AT5G15150 I 0.653
Bo2g012410 Brassica oleracea Bo2g012410 I 0.653
Bo3g010120 Brassica oleracea Bo3g010120 I 0.653
Bra006285 Brassica rapa Bra006285 I 0.653
Bra023506 Brassica rapa Bra023506 I 0.653
ATHB-3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001192 I 0.653
GSMUA_Achr10G18860_001 Musa acuminata GSMUA_Achr10G18860_001 I 0.653
GSMUA_Achr4G00550_001 Musa acuminata GSMUA_Achr4G00550_001 I 0.653
Bostr.2902s0249 Boechera stricta Bostr.2902s0249 I 0.653
Cagra.1036s0042 Capsella grandiflora Cagra.1036s0042 I 0.653
Carubv10001498m.g Capsella rubella Carubv10001498m.g I 0.653
Thhalv10014157m.g Eutrema salsugineum Thhalv10014157m.g I 0.653
GSMUA_Achr6G36450_001 Musa acuminata GSMUA_Achr6G36450_001 I 0.652
Gorai.007G111400 Gossypium raimondii Gorai.007G111400 I 0.652
Bo9g165360 Brassica oleracea Bo9g165360 I 0.651
Bra008717 Brassica rapa Bra008717 I 0.651
GLYMA19G02490 Glycine max GLYMA19G02490 I 0.651
MTR_6g011610 Medicago truncatula MTR_6g011610 I 0.651
POPTR_0017s11800 Populus trichocarpa POPTR_0017s11800 I 0.651
PRUPE_ppa020465mg Prunus persica PRUPE_ppa020465mg I 0.651
TCM_018470 Theobroma cacao TCM_018470 I 0.651
Ca_10527 Cicer arietinum Ca_10527 I 0.651
Cla010510 Citrullus lanatus Cla010510 I 0.651
Pm015861 Prunus mume Pm015861 I 0.651
29822.m003500 Ricinus communis 29822.m003500 I 0.651
cassava13234.valid.m1 Manihot esculenta cassava13234.valid.m1 I 0.651
cassava39955.m1 Manihot esculenta cassava39955.m1 I 0.651
Cucsa.158420 Cucumis sativus Cucsa.158420 I 0.651
Ciclev10012352m.g Citrus clementina Ciclev10012352m.g I 0.651
Eucgr.I01934 Eucalyptus grandis Eucgr.I01934 I 0.651
Eucgr.I02255 Eucalyptus grandis Eucgr.I02255 I 0.651
evm.TU.supercontig_14.18 Carica papaya evm.TU.supercontig_14.18 I 0.651
gene28322-v1.0-hybrid Fragaria vesca gene28322-v1.0-hybrid I 0.651
Gorai.001G256300 Gossypium raimondii Gorai.001G256300 I 0.651
Gorai.006G022100 Gossypium raimondii Gorai.006G022100 I 0.651
MDP0000124827 Malus domestica MDP0000124827 I 0.651
MDP0000737128 Malus domestica MDP0000737128 I 0.651
orange1.1g041877m.g Citrus sinensis orange1.1g041877m.g I 0.651
SapurV1A.1260s0050 Salix purpurea SapurV1A.1260s0050 I 0.651
SapurV1A.2065s0030 Salix purpurea SapurV1A.2065s0030 I 0.651
PK20392.1 Cannabis sativa PK20392.1 D 0.651
chr2.LjT39I02.10.nc Lotus japonicus chr2.LjT39I02.10.nc I 0.651
GLYMA09G37410 Glycine max GLYMA09G37410 I 0.650
GLYMA18G49290 Glycine max GLYMA18G49290 I 0.650
POPTR_0014s09860 Populus trichocarpa POPTR_0014s09860 I 0.649
ATHB-12 Arabidopsis thaliana AT3G61890 D 0.648
Bo8g097390 Brassica oleracea Bo8g097390 I 0.648
Bra007637 Brassica rapa Bra007637 I 0.648
ATHB-12 Arabidopsis lyrata fgenesh2_kg.5__2686__AT3G61890.1 I 0.648
VIT_15s0048g02870 Vitis vinifera VIT_15s0048g02870 I 0.648
Bostr.13158s0194 Boechera stricta Bostr.13158s0194 I 0.648
Cagra.0483s0055 Capsella grandiflora Cagra.0483s0055 I 0.648
Carubv10017952m.g Capsella rubella Carubv10017952m.g I 0.648
Ciclev10022365m.g Citrus clementina Ciclev10022365m.g I 0.648
Eucgr.A01575 Eucalyptus grandis Eucgr.A01575 I 0.648
orange1.1g029280m.g Citrus sinensis orange1.1g029280m.g I 0.648
PGSC0003DMG400002692 Solanum tuberosum PGSC0003DMG400002692 I 0.644
Solyc09g008810.2 Solanum lycopersicum Solyc09g008810.2 I 0.644
VIT_08s0007g04200 Vitis vinifera VIT_08s0007g04200 I 0.644
mgf022748m Mimulus guttatus mgf022748m I 0.644
MDP0000134241 Malus domestica MDP0000134241 I 0.644
GLYMA10G07440 Glycine max GLYMA10G07440 I 0.643
GLYMA13G21330 Glycine max GLYMA13G21330 I 0.643
POPTR_0006s11890 Populus trichocarpa POPTR_0006s11890 I 0.643
PRUPE_ppa015952mg Prunus persica PRUPE_ppa015952mg I 0.643
TCM_022391 Theobroma cacao TCM_022391 I 0.643
Cla018017 Citrullus lanatus Cla018017 I 0.643
Pm026270 Prunus mume Pm026270 I 0.643
29815.m000499 Ricinus communis 29815.m000499 I 0.643
cassava14646.m1 Manihot esculenta cassava14646.m1 I 0.643
cassava34082.m1 Manihot esculenta cassava34082.m1 I 0.643
Cucsa.125070 Cucumis sativus Cucsa.125070 I 0.643
Cucsa.378700 Cucumis sativus Cucsa.378700 I 0.643
mgf019824m Mimulus guttatus mgf019824m I 0.643
evm.TU.supercontig_5.106 Carica papaya evm.TU.supercontig_5.106 I 0.643
Gorai.002G244000 Gossypium raimondii Gorai.002G244000 I 0.643
Gorai.002G244200 Gossypium raimondii Gorai.002G244200 I 0.643
Gorai.009G409600 Gossypium raimondii Gorai.009G409600 I 0.643
MDP0000119544 Malus domestica MDP0000119544 I 0.643
MDP0000738604 Malus domestica MDP0000738604 I 0.643
SapurV1A.0226s0110 Salix purpurea SapurV1A.0226s0110 I 0.643
LjSGA_022706.2 Lotus japonicus LjSGA_022706.2 I 0.643
cassava39514.m1 Manihot esculenta cassava39514.m1 I 0.642
PRUPE_ppa017711mg Prunus persica PRUPE_ppa017711mg I 0.638
Pm011328 Prunus mume Pm011328 I 0.638
Lus10008840.g Linum usitatissimum Lus10008840.g I 0.638
Lus10032952.g Linum usitatissimum Lus10032952.g I 0.638
MDP0000146339 Malus domestica MDP0000146339 I 0.636
POPTR_0001s40540 Populus trichocarpa POPTR_0001s40540 I 0.635
POPTR_0011s11510 Populus trichocarpa POPTR_0011s11510 I 0.635
TCM_031644 Theobroma cacao TCM_031644 I 0.635
Gorai.002G067100 Gossypium raimondii Gorai.002G067100 I 0.635
SapurV1A.0207s0080 Salix purpurea SapurV1A.0207s0080 I 0.635
Gorai.004G123500 Gossypium raimondii Gorai.004G123500 I 0.634
ATHB-51 Arabidopsis thaliana AT5G03790 D 0.633
Bo3g002560 Brassica oleracea Bo3g002560 I 0.633
Bo9g181720 Brassica oleracea Bo9g181720 I 0.633
Bra009510 Brassica rapa Bra009510 I 0.633
ATHB51 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000249 I 0.633
Q39944_HELAN Helianthus annuus Q39944_HELAN D 0.633
Bostr.2128s0071 Boechera stricta Bostr.2128s0071 I 0.633
Cagra.0154s0025 Capsella grandiflora Cagra.0154s0025 I 0.633
Carubv10002440m.g Capsella rubella Carubv10002440m.g I 0.633
Thhalv10014547m.g Eutrema salsugineum Thhalv10014547m.g I 0.633
Gorai.004G123100 Gossypium raimondii Gorai.004G123100 I 0.632
ATHB-20 Arabidopsis thaliana AT3G01220 D 0.631
Bo1g158730 Brassica oleracea Bo1g158730 I 0.631
Bra039135 Brassica rapa Bra039135 I 0.631
ATHB20 Arabidopsis lyrata scaffold_300109.1 I 0.631
Bostr.1460s0094 Boechera stricta Bostr.1460s0094 I 0.631
Cagra.1390s0021 Capsella grandiflora Cagra.1390s0021 I 0.631
Carubv10014214m.g Capsella rubella Carubv10014214m.g I 0.631
gene30097-v1.0-hybrid Fragaria vesca gene30097-v1.0-hybrid I 0.631
Thhalv10021334m.g Eutrema salsugineum Thhalv10021334m.g I 0.631
PK15535.1 Cannabis sativa PK15535.1 I 0.631
ATHB-22 Arabidopsis thaliana AT2G36610 D 0.630
Bo4g034490 Brassica oleracea Bo4g034490 I 0.630
Bra005259 Brassica rapa Bra005259 I 0.630
TCM_015486 Theobroma cacao TCM_015486 I 0.630
VIT_10s0003g00380 Vitis vinifera VIT_10s0003g00380 I 0.629
cassava29430.valid.m1 Manihot esculenta cassava29430.valid.m1 I 0.629
cassava29431.valid.m1 Manihot esculenta cassava29431.valid.m1 I 0.629
Aquca_013_00021 Aquilegia coerulea Aquca_013_00021 I 0.629
Pavir.Hb01447 Panicum virgatum Pavir.Hb01447 I 0.629
MDP0000909160 Malus domestica MDP0000909160 I 0.628
TCM_015645 Theobroma cacao TCM_015645 I 0.627
mgf013301m Mimulus guttatus mgf013301m I 0.627
Lus10003492.g Linum usitatissimum Lus10003492.g I 0.627
Lus10013103.g Linum usitatissimum Lus10013103.g I 0.627
PGSC0003DMG400018509 Solanum tuberosum PGSC0003DMG400018509 I 0.622
Solyc03g082550.2 Solanum lycopersicum Solyc03g082550.2 I 0.622
Gorai.007G016800 Gossypium raimondii Gorai.007G016800 I 0.622
Bo2g005230 Brassica oleracea Bo2g005230 I 0.621
Bra028820 Brassica rapa Bra028820 I 0.621
cassava29803.valid.m1 Manihot esculenta cassava29803.valid.m1 I 0.620
Gorai.001G152200 Gossypium raimondii Gorai.001G152200 I 0.620
PK15571.1 Cannabis sativa PK15571.1 I 0.620
gene24976-v1.0-hybrid Fragaria vesca gene24976-v1.0-hybrid I 0.618
Bo12274s010 Brassica oleracea Bo12274s010 I 0.617
Lus10030214.g Linum usitatissimum Lus10030214.g I 0.616
GLYMA03G34710 Glycine max GLYMA03G34710 I 0.612
GLYMA19G37380 Glycine max GLYMA19G37380 I 0.612
MTR_7g103340 Medicago truncatula MTR_7g103340 I 0.612
Ca_00750 Cicer arietinum Ca_00750 I 0.612
Thhalv10017567m.g Eutrema salsugineum Thhalv10017567m.g I 0.610
ATHB-52 Arabidopsis thaliana AT5G53980 I 0.606
Bo2g042250 Brassica oleracea Bo2g042250 I 0.606
Bra022687 Brassica rapa Bra022687 I 0.606
ATHB52 Arabidopsis lyrata fgenesh2_kg.8__1293__AT5G53980.1 I 0.606
OB04G27300 Oryza brachyantha OB04G27300 I 0.606
Bostr.26833s0878 Boechera stricta Bostr.26833s0878 I 0.606
Cagra.4622s0007 Capsella grandiflora Cagra.4622s0007 I 0.606
Carubv10027280m.g Capsella rubella Carubv10027280m.g I 0.606
Thhalv10014905m.g Eutrema salsugineum Thhalv10014905m.g I 0.606
PGSC0003DMG400021278 Solanum tuberosum PGSC0003DMG400021278 I 0.605
Cla002451 Citrullus lanatus Cla002451 I 0.604
SapurV1A.0094s0260 Salix purpurea SapurV1A.0094s0260 I 0.604
BGIOSGA016852 Oryza indica BGIOSGA016852 I 0.602
BRADI5G17170 Brachypodium distachyon BRADI5G17170 I 0.602
F775_29232 Aegilops tauschii F775_29232 I 0.602
GLYMA04G40960 Glycine max GLYMA04G40960 I 0.602
GLYMA06G13890 Glycine max GLYMA06G13890 I 0.602
GRMZM2G351330 Zea mays GRMZM2G351330 I 0.602
GRMZM2G396527 Zea mays GRMZM2G396527 I 0.602
LPERR04G16440 Leersia perrieri LPERR04G16440 I 0.602
MLOC_70350 Hordeum vulgare MLOC_70350 I 0.602
MTR_3g092150 Medicago truncatula MTR_3g092150 I 0.602
OBART04G20320 Oryza barthii OBART04G20320 I 0.602
OGLUM04G20240 Oryza glumaepatula OGLUM04G20240 I 0.602
ONIVA04G18550 Oryza nivara ONIVA04G18550 I 0.602
OPUNC04G17950 Oryza punctata OPUNC04G17950 I 0.602
ORGLA04G0173700 Oryza glaberrima ORGLA04G0173700 I 0.602
ORUFI04G21910 Oryza rufipogon ORUFI04G21910 I 0.602
Sb06g024000 Sorghum bicolor Sb06g024000 I 0.602
Si010550m.g Setaria italica Si010550m.g I 0.602
Traes_2BL_B69300543 Triticum aestivum Traes_2BL_B69300543 I 0.602
Ca_04027 Cicer arietinum Ca_04027 I 0.602
Pavir.Ga00670 Panicum virgatum Pavir.Ga00670 I 0.602