Carubv10024148m.g (Capsella rubella)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Carubv10024148m.g T228346_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-22
M02041_2.00 		Arabidopsis thaliana
NNATAATWWWNNN
NNNWWWATTATNN		 PBM
Weirauch et al.(2014)
pTH5883 		0.793 0.895
ATHB-51
M00867_2.00 		Arabidopsis thaliana
ATWATKNN
NNMATWAT		 PBM
Franco-Zorrilla et al.(2014)
ATHB51 		0.756 0.754
ATHB-51
M06927_2.00 		Arabidopsis thaliana
DNCAATAATTGAD
HTCAATTATTGNH		 Dap-seq
OMalley et al.(2016)
LMI1_col_a 		0.756 0.754
ATHB-51
M06928_2.00 		Arabidopsis thaliana
NDNCAATAATTGA
TCAATTATTGNHN		 Dap-seq
OMalley et al.(2016)
LMI1_colamp_a 		0.756 0.754
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.677 0.632
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.677 0.632
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.657 0.579
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.657 0.579
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10024148m Homeodomain 72 128

Links

Other Homeodomain family TFs
Other Capsella rubella TFs

186 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.23794s0432 Boechera stricta Bostr.23794s0432 I 0.867
Cagra.0228s0052 Capsella grandiflora Cagra.0228s0052 I 0.867
ATHB22 Arabidopsis lyrata Al_scaffold_0004_2163 I 0.821
GLYMA10G07440 Glycine max GLYMA10G07440 I 0.815
GLYMA13G21330 Glycine max GLYMA13G21330 I 0.815
POPTR_0006s11890 Populus trichocarpa POPTR_0006s11890 I 0.798
29815.m000499 Ricinus communis 29815.m000499 I 0.798
Gorai.002G244200 Gossypium raimondii Gorai.002G244200 I 0.798
MDP0000119544 Malus domestica MDP0000119544 I 0.797
MDP0000134241 Malus domestica MDP0000134241 I 0.797
MDP0000738604 Malus domestica MDP0000738604 I 0.797
Bo4g034490 Brassica oleracea Bo4g034490 I 0.794
Bra005259 Brassica rapa Bra005259 I 0.794
PRUPE_ppa015952mg Prunus persica PRUPE_ppa015952mg I 0.794
TCM_022391 Theobroma cacao TCM_022391 I 0.794
Pm026270 Prunus mume Pm026270 I 0.794
evm.TU.supercontig_5.106 Carica papaya evm.TU.supercontig_5.106 I 0.794
ATHB-22 Arabidopsis thaliana AT2G36610 D 0.793
VIT_08s0007g04200 Vitis vinifera VIT_08s0007g04200 I 0.792
Cagra.0463s0004 Capsella grandiflora Cagra.0463s0004 I 0.789
Carubv10003464m.g Capsella rubella Carubv10003464m.g I 0.789
LjSGA_022706.2 Lotus japonicus LjSGA_022706.2 I 0.789
Ciclev10012525m.g Citrus clementina Ciclev10012525m.g I 0.788
orange1.1g040769m.g Citrus sinensis orange1.1g040769m.g I 0.788
SapurV1A.0226s0110 Salix purpurea SapurV1A.0226s0110 I 0.784
gene30097-v1.0-hybrid Fragaria vesca gene30097-v1.0-hybrid I 0.782
Thhalv10017567m.g Eutrema salsugineum Thhalv10017567m.g I 0.782
PK15535.1 Cannabis sativa PK15535.1 I 0.782
Thhalv10015784m.g Eutrema salsugineum Thhalv10015784m.g I 0.775
Cla018017 Citrullus lanatus Cla018017 I 0.766
cassava14646.m1 Manihot esculenta cassava14646.m1 I 0.766
Cucsa.378700 Cucumis sativus Cucsa.378700 I 0.766
PGSC0003DMG400002692 Solanum tuberosum PGSC0003DMG400002692 I 0.764
Solyc09g008810.2 Solanum lycopersicum Solyc09g008810.2 I 0.764
cassava34082.m1 Manihot esculenta cassava34082.m1 I 0.762
Gorai.009G409600 Gossypium raimondii Gorai.009G409600 I 0.762
Lus10008641.g Linum usitatissimum Lus10008641.g I 0.762
Lus10035583.g Linum usitatissimum Lus10035583.g I 0.762
mgf022748m Mimulus guttatus mgf022748m I 0.761
Gorai.002G244000 Gossypium raimondii Gorai.002G244000 I 0.761
Cla018641 Citrullus lanatus Cla018641 I 0.757
Cucsa.125070 Cucumis sativus Cucsa.125070 I 0.757
ATHB-51 Arabidopsis thaliana AT5G03790 D 0.756
Bo9g181720 Brassica oleracea Bo9g181720 I 0.756
Bra009510 Brassica rapa Bra009510 I 0.756
ATHB51 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000249 I 0.756
Bostr.2128s0071 Boechera stricta Bostr.2128s0071 I 0.756
Cagra.0154s0025 Capsella grandiflora Cagra.0154s0025 I 0.756
Carubv10002440m.g Capsella rubella Carubv10002440m.g I 0.756
Thhalv10014547m.g Eutrema salsugineum Thhalv10014547m.g I 0.756
mgf019824m Mimulus guttatus mgf019824m I 0.754
Bo3g002560 Brassica oleracea Bo3g002560 I 0.752
Bo2g005230 Brassica oleracea Bo2g005230 I 0.740
Bra028820 Brassica rapa Bra028820 I 0.740
MTR_1g061660 Medicago truncatula MTR_1g061660 I 0.735
Eucgr.A01575 Eucalyptus grandis Eucgr.A01575 I 0.728
Ca_20151 Cicer arietinum Ca_20151 I 0.717
Aquca_009_01021 Aquilegia coerulea Aquca_009_01021 I 0.706
GRMZM2G034113 Zea mays GRMZM2G034113 I 0.703
GRMZM2G041462 Zea mays GRMZM2G041462 I 0.703
Sb02g030660 Sorghum bicolor Sb02g030660 I 0.703
Si030983m.g Setaria italica Si030983m.g I 0.703
Pavir.Ba01249 Panicum virgatum Pavir.Ba01249 I 0.703
Pavir.Bb02633 Panicum virgatum Pavir.Bb02633 I 0.703
Gorai.001G256300 Gossypium raimondii Gorai.001G256300 I 0.699
Al_scaffold_0006_290 Arabidopsis lyrata Al_scaffold_0006_290 I 0.698
VIT_19s0014g02110 Vitis vinifera VIT_19s0014g02110 I 0.698
Bostr.2128s0069 Boechera stricta Bostr.2128s0069 I 0.696
PRUPE_ppa010647mg Prunus persica PRUPE_ppa010647mg I 0.695
Pm018314 Prunus mume Pm018314 I 0.695
VIT_18s0001g06430 Vitis vinifera VIT_18s0001g06430 I 0.685
Eucgr.A01421 Eucalyptus grandis Eucgr.A01421 I 0.679
SapurV1A.3101s0010 Salix purpurea SapurV1A.3101s0010 I 0.678
GLYMA09G37410 Glycine max GLYMA09G37410 I 0.677
GLYMA18G49290 Glycine max GLYMA18G49290 I 0.677
GLYMA19G02490 Glycine max GLYMA19G02490 I 0.677
MTR_6g011610 Medicago truncatula MTR_6g011610 I 0.677
POPTR_0017s11800 Populus trichocarpa POPTR_0017s11800 I 0.677
PRUPE_ppa020465mg Prunus persica PRUPE_ppa020465mg I 0.677
TCM_018470 Theobroma cacao TCM_018470 I 0.677
Ca_10527 Cicer arietinum Ca_10527 I 0.677
Cla010510 Citrullus lanatus Cla010510 I 0.677
Pm015861 Prunus mume Pm015861 I 0.677
29822.m003500 Ricinus communis 29822.m003500 I 0.677
cassava13234.valid.m1 Manihot esculenta cassava13234.valid.m1 I 0.677
cassava39955.m1 Manihot esculenta cassava39955.m1 I 0.677
Cucsa.158420 Cucumis sativus Cucsa.158420 I 0.677
Ciclev10012352m.g Citrus clementina Ciclev10012352m.g I 0.677
evm.TU.supercontig_14.18 Carica papaya evm.TU.supercontig_14.18 I 0.677
gene28322-v1.0-hybrid Fragaria vesca gene28322-v1.0-hybrid I 0.677
Gorai.006G022100 Gossypium raimondii Gorai.006G022100 I 0.677
MDP0000124827 Malus domestica MDP0000124827 I 0.677
MDP0000737128 Malus domestica MDP0000737128 I 0.677
orange1.1g041877m.g Citrus sinensis orange1.1g041877m.g I 0.677
SapurV1A.1260s0050 Salix purpurea SapurV1A.1260s0050 I 0.677
SapurV1A.2065s0030 Salix purpurea SapurV1A.2065s0030 I 0.677
PK20392.1 Cannabis sativa PK20392.1 D 0.677
chr2.LjT39I02.10.nc Lotus japonicus chr2.LjT39I02.10.nc I 0.677
HAT7 Arabidopsis thaliana AT5G15150 I 0.676
Bo2g012410 Brassica oleracea Bo2g012410 I 0.676
Bo3g010120 Brassica oleracea Bo3g010120 I 0.676
Bo9g165360 Brassica oleracea Bo9g165360 I 0.676
Bra006285 Brassica rapa Bra006285 I 0.676
Bra008717 Brassica rapa Bra008717 I 0.676
Bra023506 Brassica rapa Bra023506 I 0.676
ATHB-3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001192 I 0.676
GSMUA_Achr10G18860_001 Musa acuminata GSMUA_Achr10G18860_001 I 0.676
GSMUA_Achr4G00550_001 Musa acuminata GSMUA_Achr4G00550_001 I 0.676
GSMUA_Achr6G36450_001 Musa acuminata GSMUA_Achr6G36450_001 I 0.676
Bostr.2902s0249 Boechera stricta Bostr.2902s0249 I 0.676
Cagra.1036s0042 Capsella grandiflora Cagra.1036s0042 I 0.676
Carubv10001498m.g Capsella rubella Carubv10001498m.g I 0.676
Thhalv10014157m.g Eutrema salsugineum Thhalv10014157m.g I 0.676
POPTR_0017s04820 Populus trichocarpa POPTR_0017s04820 I 0.674
SapurV1A.2554s0010 Salix purpurea SapurV1A.2554s0010 I 0.674
BRADI4G35910 Brachypodium distachyon BRADI4G35910 I 0.671
GSMUA_Achr6G10660_001 Musa acuminata GSMUA_Achr6G10660_001 I 0.670
Eucgr.I01934 Eucalyptus grandis Eucgr.I01934 I 0.669
AMTR_s00027p00144540 Amborella trichopoda AMTR_s00027p00144540 I 0.664
gene18656-v1.0-hybrid Fragaria vesca gene18656-v1.0-hybrid I 0.663
MDP0000311522 Malus domestica MDP0000311522 I 0.662
Cagra.0154s0024 Capsella grandiflora Cagra.0154s0024 I 0.660
Carubv10002831m.g Capsella rubella Carubv10002831m.g I 0.659
Eucgr.I02255 Eucalyptus grandis Eucgr.I02255 I 0.659
Bo9g181710 Brassica oleracea Bo9g181710 I 0.658
ATHB-20 Arabidopsis thaliana AT3G01220 D 0.657
Bo1g158730 Brassica oleracea Bo1g158730 I 0.657
Bra039135 Brassica rapa Bra039135 I 0.657
ATHB20 Arabidopsis lyrata scaffold_300109.1 I 0.657
Bostr.1460s0094 Boechera stricta Bostr.1460s0094 I 0.657
Cagra.1390s0021 Capsella grandiflora Cagra.1390s0021 I 0.657
Carubv10014214m.g Capsella rubella Carubv10014214m.g I 0.657
Thhalv10021334m.g Eutrema salsugineum Thhalv10021334m.g I 0.657
Solyc03g034120.2 Solanum lycopersicum Solyc03g034120.2 I 0.655
PRUPE_ppa017711mg Prunus persica PRUPE_ppa017711mg I 0.654
Pm011328 Prunus mume Pm011328 I 0.654
MDP0000146339 Malus domestica MDP0000146339 I 0.654
Bo12274s010 Brassica oleracea Bo12274s010 I 0.652
29983.m003123 Ricinus communis 29983.m003123 I 0.652
ATHB-52 Arabidopsis thaliana AT5G53980 I 0.648
Bo2g042250 Brassica oleracea Bo2g042250 I 0.648
Bra022687 Brassica rapa Bra022687 I 0.648
ATHB52 Arabidopsis lyrata fgenesh2_kg.8__1293__AT5G53980.1 I 0.648
Bostr.26833s0878 Boechera stricta Bostr.26833s0878 I 0.648
Cagra.4622s0007 Capsella grandiflora Cagra.4622s0007 I 0.648
Carubv10027280m.g Capsella rubella Carubv10027280m.g I 0.648
Thhalv10014905m.g Eutrema salsugineum Thhalv10014905m.g I 0.648
VIT_10s0003g00380 Vitis vinifera VIT_10s0003g00380 I 0.647
MTR_7g103340 Medicago truncatula MTR_7g103340 I 0.645
PGSC0003DMG400031777 Solanum tuberosum PGSC0003DMG400031777 I 0.645
Solyc02g077590.1 Solanum lycopersicum Solyc02g077590.1 I 0.645
mgf013301m Mimulus guttatus mgf013301m I 0.645
GLYMA13G05270 Glycine max GLYMA13G05270 I 0.644
GLYMA06G35050 Glycine max GLYMA06G35050 I 0.643
evm.TU.supercontig_80.1 Carica papaya evm.TU.supercontig_80.1 I 0.643
GLYMA03G34710 Glycine max GLYMA03G34710 I 0.641
GLYMA19G37380 Glycine max GLYMA19G37380 I 0.641
Ca_00750 Cicer arietinum Ca_00750 I 0.641
Pavir.Hb01447 Panicum virgatum Pavir.Hb01447 I 0.640
VIT_16s0098g01170 Vitis vinifera VIT_16s0098g01170 I 0.639
PGSC0003DMG400021278 Solanum tuberosum PGSC0003DMG400021278 I 0.638
POPTR_0007s01370 Populus trichocarpa POPTR_0007s01370 I 0.634
PGSC0003DMG400017775 Solanum tuberosum PGSC0003DMG400017775 I 0.633
PGSC0003DMG400017776 Solanum tuberosum PGSC0003DMG400017776 I 0.633
PGSC0003DMG400017787 Solanum tuberosum PGSC0003DMG400017787 I 0.633
Solyc03g034110.2 Solanum lycopersicum Solyc03g034110.2 I 0.633
Gorai.007G206000 Gossypium raimondii Gorai.007G206000 I 0.633
Solyc03g034130.2 Solanum lycopersicum Solyc03g034130.2 I 0.627
Solyc07g062790.1 Solanum lycopersicum Solyc07g062790.1 I 0.627
PGSC0003DMG402012439 Solanum tuberosum PGSC0003DMG402012439 I 0.624
POPTR_0001s40540 Populus trichocarpa POPTR_0001s40540 I 0.623
POPTR_0011s11510 Populus trichocarpa POPTR_0011s11510 I 0.623
TCM_031644 Theobroma cacao TCM_031644 I 0.623
Gorai.002G067100 Gossypium raimondii Gorai.002G067100 I 0.623
Lus10003492.g Linum usitatissimum Lus10003492.g I 0.623
Lus10013103.g Linum usitatissimum Lus10013103.g I 0.623
SapurV1A.0207s0080 Salix purpurea SapurV1A.0207s0080 I 0.623
MDP0000909160 Malus domestica MDP0000909160 I 0.622
MTR_8g026960 Medicago truncatula MTR_8g026960 I 0.612
Ca_17608 Cicer arietinum Ca_17608 I 0.612
MDP0000316497 Malus domestica MDP0000316497 I 0.611
Ciclev10009522m.g Citrus clementina Ciclev10009522m.g I 0.610
orange1.1g035661m.g Citrus sinensis orange1.1g035661m.g I 0.610
SapurV1A.0817s0120 Salix purpurea SapurV1A.0817s0120 I 0.607
gene24976-v1.0-hybrid Fragaria vesca gene24976-v1.0-hybrid I 0.603
Gorai.012G055400 Gossypium raimondii Gorai.012G055400 I 0.601