Thhalv10015784m.g (Eutrema salsugineum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Thhalv10015784m.g T229572_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-51
M00867_2.00 		Arabidopsis thaliana
ATWATKNN
NNMATWAT		 PBM
Franco-Zorrilla et al.(2014)
ATHB51 		0.756 0.825
ATHB-51
M06927_2.00 		Arabidopsis thaliana
DNCAATAATTGAD
HTCAATTATTGNH		 Dap-seq
OMalley et al.(2016)
LMI1_col_a 		0.756 0.825
ATHB-51
M06928_2.00 		Arabidopsis thaliana
NDNCAATAATTGA
TCAATTATTGNHN		 Dap-seq
OMalley et al.(2016)
LMI1_colamp_a 		0.756 0.825
ATHB-22
M02041_2.00 		Arabidopsis thaliana
NNATAATWWWNNN
NNNWWWATTATNN		 PBM
Weirauch et al.(2014)
pTH5883 		0.733 0.702
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.669 0.596
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.669 0.596
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.649 0.579
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.649 0.579
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10015784m Homeodomain 66 122

Links

Other Homeodomain family TFs
Other Eutrema salsugineum TFs

183 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.0463s0004 Capsella grandiflora Cagra.0463s0004 I 0.821
Carubv10003464m.g Capsella rubella Carubv10003464m.g I 0.811
Bostr.23794s0432 Boechera stricta Bostr.23794s0432 I 0.775
Cagra.0228s0052 Capsella grandiflora Cagra.0228s0052 I 0.775
Carubv10024148m.g Capsella rubella Carubv10024148m.g I 0.775
ATHB22 Arabidopsis lyrata Al_scaffold_0004_2163 I 0.760
cassava34082.m1 Manihot esculenta cassava34082.m1 I 0.759
evm.TU.supercontig_5.106 Carica papaya evm.TU.supercontig_5.106 I 0.759
Gorai.009G409600 Gossypium raimondii Gorai.009G409600 I 0.759
Lus10008641.g Linum usitatissimum Lus10008641.g I 0.759
Lus10035583.g Linum usitatissimum Lus10035583.g I 0.759
VIT_08s0007g04200 Vitis vinifera VIT_08s0007g04200 I 0.757
ATHB-51 Arabidopsis thaliana AT5G03790 D 0.756
Bo9g181720 Brassica oleracea Bo9g181720 I 0.756
Bra009510 Brassica rapa Bra009510 I 0.756
ATHB51 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000249 I 0.756
Bostr.2128s0071 Boechera stricta Bostr.2128s0071 I 0.756
Cagra.0154s0025 Capsella grandiflora Cagra.0154s0025 I 0.756
Carubv10002440m.g Capsella rubella Carubv10002440m.g I 0.756
Thhalv10014547m.g Eutrema salsugineum Thhalv10014547m.g I 0.756
POPTR_0006s11890 Populus trichocarpa POPTR_0006s11890 I 0.755
PRUPE_ppa015952mg Prunus persica PRUPE_ppa015952mg I 0.755
TCM_022391 Theobroma cacao TCM_022391 I 0.755
Cla018017 Citrullus lanatus Cla018017 I 0.755
Pm026270 Prunus mume Pm026270 I 0.755
29815.m000499 Ricinus communis 29815.m000499 I 0.755
cassava14646.m1 Manihot esculenta cassava14646.m1 I 0.755
Cucsa.378700 Cucumis sativus Cucsa.378700 I 0.755
Gorai.002G244200 Gossypium raimondii Gorai.002G244200 I 0.755
MDP0000119544 Malus domestica MDP0000119544 I 0.754
MDP0000134241 Malus domestica MDP0000134241 I 0.754
MDP0000738604 Malus domestica MDP0000738604 I 0.754
PGSC0003DMG400002692 Solanum tuberosum PGSC0003DMG400002692 I 0.753
Solyc09g008810.2 Solanum lycopersicum Solyc09g008810.2 I 0.753
mgf022748m Mimulus guttatus mgf022748m I 0.753
Bo3g002560 Brassica oleracea Bo3g002560 I 0.752
GLYMA10G07440 Glycine max GLYMA10G07440 I 0.751
GLYMA13G21330 Glycine max GLYMA13G21330 I 0.751
mgf019824m Mimulus guttatus mgf019824m I 0.751
LjSGA_022706.2 Lotus japonicus LjSGA_022706.2 I 0.751
Cla018641 Citrullus lanatus Cla018641 I 0.750
Cucsa.125070 Cucumis sativus Cucsa.125070 I 0.750
Gorai.002G244000 Gossypium raimondii Gorai.002G244000 I 0.750
Ciclev10012525m.g Citrus clementina Ciclev10012525m.g I 0.745
orange1.1g040769m.g Citrus sinensis orange1.1g040769m.g I 0.745
gene30097-v1.0-hybrid Fragaria vesca gene30097-v1.0-hybrid I 0.743
PK15535.1 Cannabis sativa PK15535.1 I 0.743
SapurV1A.0226s0110 Salix purpurea SapurV1A.0226s0110 I 0.742
Bo4g034490 Brassica oleracea Bo4g034490 I 0.741
Bra005259 Brassica rapa Bra005259 I 0.741
Bo2g005230 Brassica oleracea Bo2g005230 I 0.740
Bra028820 Brassica rapa Bra028820 I 0.740
ATHB-22 Arabidopsis thaliana AT2G36610 D 0.733
Aquca_009_01021 Aquilegia coerulea Aquca_009_01021 I 0.724
Thhalv10017567m.g Eutrema salsugineum Thhalv10017567m.g I 0.722
Al_scaffold_0006_290 Arabidopsis lyrata Al_scaffold_0006_290 I 0.720
Bostr.2128s0069 Boechera stricta Bostr.2128s0069 I 0.718
GRMZM2G034113 Zea mays GRMZM2G034113 I 0.705
GRMZM2G041462 Zea mays GRMZM2G041462 I 0.705
Sb02g030660 Sorghum bicolor Sb02g030660 I 0.705
Si030983m.g Setaria italica Si030983m.g I 0.705
Pavir.Ba01249 Panicum virgatum Pavir.Ba01249 I 0.705
Pavir.Bb02633 Panicum virgatum Pavir.Bb02633 I 0.705
PRUPE_ppa010647mg Prunus persica PRUPE_ppa010647mg I 0.699
Pm018314 Prunus mume Pm018314 I 0.699
MTR_1g061660 Medicago truncatula MTR_1g061660 I 0.692
Cagra.0154s0024 Capsella grandiflora Cagra.0154s0024 I 0.692
Carubv10002831m.g Capsella rubella Carubv10002831m.g I 0.691
Eucgr.A01575 Eucalyptus grandis Eucgr.A01575 I 0.691
29983.m003123 Ricinus communis 29983.m003123 I 0.677
VIT_18s0001g06430 Vitis vinifera VIT_18s0001g06430 I 0.676
Ca_20151 Cicer arietinum Ca_20151 I 0.675
BRADI4G35910 Brachypodium distachyon BRADI4G35910 I 0.673
VIT_19s0014g02110 Vitis vinifera VIT_19s0014g02110 I 0.670
HAT7 Arabidopsis thaliana AT5G15150 I 0.669
Bo2g012410 Brassica oleracea Bo2g012410 I 0.669
Bo3g010120 Brassica oleracea Bo3g010120 I 0.669
Bo9g165360 Brassica oleracea Bo9g165360 I 0.669
Bra006285 Brassica rapa Bra006285 I 0.669
Bra008717 Brassica rapa Bra008717 I 0.669
Bra023506 Brassica rapa Bra023506 I 0.669
ATHB-3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001192 I 0.669
GLYMA09G37410 Glycine max GLYMA09G37410 I 0.669
GLYMA18G49290 Glycine max GLYMA18G49290 I 0.669
GLYMA19G02490 Glycine max GLYMA19G02490 I 0.669
GSMUA_Achr10G18860_001 Musa acuminata GSMUA_Achr10G18860_001 I 0.669
GSMUA_Achr4G00550_001 Musa acuminata GSMUA_Achr4G00550_001 I 0.669
GSMUA_Achr6G36450_001 Musa acuminata GSMUA_Achr6G36450_001 I 0.669
MTR_6g011610 Medicago truncatula MTR_6g011610 I 0.669
POPTR_0017s11800 Populus trichocarpa POPTR_0017s11800 I 0.669
PRUPE_ppa020465mg Prunus persica PRUPE_ppa020465mg I 0.669
TCM_018470 Theobroma cacao TCM_018470 I 0.669
Ca_10527 Cicer arietinum Ca_10527 I 0.669
Cla010510 Citrullus lanatus Cla010510 I 0.669
Pm015861 Prunus mume Pm015861 I 0.669
29822.m003500 Ricinus communis 29822.m003500 I 0.669
cassava13234.valid.m1 Manihot esculenta cassava13234.valid.m1 I 0.669
cassava39955.m1 Manihot esculenta cassava39955.m1 I 0.669
Cucsa.158420 Cucumis sativus Cucsa.158420 I 0.669
Bostr.2902s0249 Boechera stricta Bostr.2902s0249 I 0.669
Cagra.1036s0042 Capsella grandiflora Cagra.1036s0042 I 0.669
Carubv10001498m.g Capsella rubella Carubv10001498m.g I 0.669
Ciclev10012352m.g Citrus clementina Ciclev10012352m.g I 0.669
evm.TU.supercontig_14.18 Carica papaya evm.TU.supercontig_14.18 I 0.669
gene28322-v1.0-hybrid Fragaria vesca gene28322-v1.0-hybrid I 0.669
Gorai.001G256300 Gossypium raimondii Gorai.001G256300 I 0.669
Gorai.006G022100 Gossypium raimondii Gorai.006G022100 I 0.669
MDP0000124827 Malus domestica MDP0000124827 I 0.669
MDP0000737128 Malus domestica MDP0000737128 I 0.669
orange1.1g041877m.g Citrus sinensis orange1.1g041877m.g I 0.669
SapurV1A.1260s0050 Salix purpurea SapurV1A.1260s0050 I 0.669
SapurV1A.2065s0030 Salix purpurea SapurV1A.2065s0030 I 0.669
Thhalv10014157m.g Eutrema salsugineum Thhalv10014157m.g I 0.669
PK20392.1 Cannabis sativa PK20392.1 D 0.669
chr2.LjT39I02.10.nc Lotus japonicus chr2.LjT39I02.10.nc I 0.669
AMTR_s00027p00144540 Amborella trichopoda AMTR_s00027p00144540 I 0.666
gene18656-v1.0-hybrid Fragaria vesca gene18656-v1.0-hybrid I 0.666
MDP0000311522 Malus domestica MDP0000311522 I 0.666
GSMUA_Achr6G10660_001 Musa acuminata GSMUA_Achr6G10660_001 I 0.663
Eucgr.I01934 Eucalyptus grandis Eucgr.I01934 I 0.661
Eucgr.I02255 Eucalyptus grandis Eucgr.I02255 I 0.661
Eucgr.A01421 Eucalyptus grandis Eucgr.A01421 I 0.659
Bo9g181710 Brassica oleracea Bo9g181710 I 0.658
PGSC0003DMG400031777 Solanum tuberosum PGSC0003DMG400031777 I 0.658
Solyc02g077590.1 Solanum lycopersicum Solyc02g077590.1 I 0.658
POPTR_0017s04820 Populus trichocarpa POPTR_0017s04820 I 0.655
Pavir.Hb01447 Panicum virgatum Pavir.Hb01447 I 0.655
SapurV1A.2554s0010 Salix purpurea SapurV1A.2554s0010 I 0.655
SapurV1A.3101s0010 Salix purpurea SapurV1A.3101s0010 I 0.655
ATHB-52 Arabidopsis thaliana AT5G53980 I 0.652
Bo2g042250 Brassica oleracea Bo2g042250 I 0.652
Bra022687 Brassica rapa Bra022687 I 0.652
ATHB52 Arabidopsis lyrata fgenesh2_kg.8__1293__AT5G53980.1 I 0.652
VIT_16s0098g01170 Vitis vinifera VIT_16s0098g01170 I 0.652
Bostr.26833s0878 Boechera stricta Bostr.26833s0878 I 0.652
Cagra.4622s0007 Capsella grandiflora Cagra.4622s0007 I 0.652
Carubv10027280m.g Capsella rubella Carubv10027280m.g I 0.652
Thhalv10014905m.g Eutrema salsugineum Thhalv10014905m.g I 0.652
ATHB-20 Arabidopsis thaliana AT3G01220 D 0.649
Bo1g158730 Brassica oleracea Bo1g158730 I 0.649
Bra039135 Brassica rapa Bra039135 I 0.649
ATHB20 Arabidopsis lyrata scaffold_300109.1 I 0.649
Bostr.1460s0094 Boechera stricta Bostr.1460s0094 I 0.649
Cagra.1390s0021 Capsella grandiflora Cagra.1390s0021 I 0.649
Carubv10014214m.g Capsella rubella Carubv10014214m.g I 0.649
Thhalv10021334m.g Eutrema salsugineum Thhalv10021334m.g I 0.649
GLYMA06G35050 Glycine max GLYMA06G35050 I 0.647
evm.TU.supercontig_80.1 Carica papaya evm.TU.supercontig_80.1 I 0.646
Bo12274s010 Brassica oleracea Bo12274s010 I 0.645
GLYMA03G34710 Glycine max GLYMA03G34710 I 0.638
GLYMA19G37380 Glycine max GLYMA19G37380 I 0.638
VIT_10s0003g00380 Vitis vinifera VIT_10s0003g00380 I 0.638
Ca_00750 Cicer arietinum Ca_00750 I 0.638
GLYMA13G05270 Glycine max GLYMA13G05270 I 0.636
MTR_7g103340 Medicago truncatula MTR_7g103340 I 0.634
Solyc03g034120.2 Solanum lycopersicum Solyc03g034120.2 I 0.633
Ciclev10009522m.g Citrus clementina Ciclev10009522m.g I 0.633
orange1.1g035661m.g Citrus sinensis orange1.1g035661m.g I 0.633
POPTR_0001s40540 Populus trichocarpa POPTR_0001s40540 I 0.626
POPTR_0011s11510 Populus trichocarpa POPTR_0011s11510 I 0.626
PRUPE_ppa017711mg Prunus persica PRUPE_ppa017711mg I 0.626
TCM_031644 Theobroma cacao TCM_031644 I 0.626
Pm011328 Prunus mume Pm011328 I 0.626
mgf013301m Mimulus guttatus mgf013301m I 0.626
Gorai.002G067100 Gossypium raimondii Gorai.002G067100 I 0.626
Lus10003492.g Linum usitatissimum Lus10003492.g I 0.626
Lus10013103.g Linum usitatissimum Lus10013103.g I 0.626
SapurV1A.0207s0080 Salix purpurea SapurV1A.0207s0080 I 0.626
MDP0000146339 Malus domestica MDP0000146339 I 0.624
MDP0000909160 Malus domestica MDP0000909160 I 0.624
PGSC0003DMG400021278 Solanum tuberosum PGSC0003DMG400021278 I 0.617
POPTR_0007s01370 Populus trichocarpa POPTR_0007s01370 I 0.615
MTR_8g026960 Medicago truncatula MTR_8g026960 I 0.614
Ca_17608 Cicer arietinum Ca_17608 I 0.614
MDP0000316497 Malus domestica MDP0000316497 I 0.614
PGSC0003DMG400017775 Solanum tuberosum PGSC0003DMG400017775 I 0.611
PGSC0003DMG400017787 Solanum tuberosum PGSC0003DMG400017787 I 0.611
Solyc03g034110.2 Solanum lycopersicum Solyc03g034110.2 I 0.611
Solyc07g062790.1 Solanum lycopersicum Solyc07g062790.1 I 0.606
Solyc03g034130.2 Solanum lycopersicum Solyc03g034130.2 I 0.605
gene24976-v1.0-hybrid Fragaria vesca gene24976-v1.0-hybrid I 0.605
PGSC0003DMG402012439 Solanum tuberosum PGSC0003DMG402012439 I 0.604
PGSC0003DMG400017776 Solanum tuberosum PGSC0003DMG400017776 I 0.601