Bo9g181710 (Brassica oleracea)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Bo9g181710 T205013_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-51
M00867_2.00 		Arabidopsis thaliana
ATWATKNN
NNMATWAT		 PBM
Franco-Zorrilla et al.(2014)
ATHB51 		0.623 0.772
ATHB-51
M06927_2.00 		Arabidopsis thaliana
DNCAATAATTGAD
HTCAATTATTGNH		 Dap-seq
OMalley et al.(2016)
LMI1_col_a 		0.623 0.772
ATHB-51
M06928_2.00 		Arabidopsis thaliana
NDNCAATAATTGA
TCAATTATTGNHN		 Dap-seq
OMalley et al.(2016)
LMI1_colamp_a 		0.623 0.772
ATHB-22
M02041_2.00 		Arabidopsis thaliana
NNATAATWWWNNN
NNNWWWATTATNN		 PBM
Weirauch et al.(2014)
pTH5883 		0.616 0.667
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo9g181710.1 Homeodomain 77 133

Links

Other Homeodomain family TFs
Other Brassica oleracea TFs

56 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.0463s0004 Capsella grandiflora Cagra.0463s0004 I 0.700
Carubv10003464m.g Capsella rubella Carubv10003464m.g I 0.678
Bostr.23794s0432 Boechera stricta Bostr.23794s0432 I 0.658
Cagra.0228s0052 Capsella grandiflora Cagra.0228s0052 I 0.658
Carubv10024148m.g Capsella rubella Carubv10024148m.g I 0.658
Thhalv10015784m.g Eutrema salsugineum Thhalv10015784m.g I 0.658
ATHB22 Arabidopsis lyrata Al_scaffold_0004_2163 I 0.643
ATHB-51 Arabidopsis thaliana AT5G03790 D 0.623
Cagra.0154s0025 Capsella grandiflora Cagra.0154s0025 I 0.623
Carubv10002440m.g Capsella rubella Carubv10002440m.g I 0.623
ATHB51 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000249 I 0.623
Bo9g181720 Brassica oleracea Bo9g181720 I 0.623
Bra009510 Brassica rapa Bra009510 I 0.623
Thhalv10014547m.g Eutrema salsugineum Thhalv10014547m.g I 0.623
Bostr.2128s0071 Boechera stricta Bostr.2128s0071 I 0.623
Bra005259 Brassica rapa Bra005259 I 0.620
Bo4g034490 Brassica oleracea Bo4g034490 I 0.620
Bo3g002560 Brassica oleracea Bo3g002560 I 0.619
Gorai.007G206000 Gossypium raimondii Gorai.007G206000 I 0.619
Pm026270 Prunus mume Pm026270 I 0.616
ATHB-22 Arabidopsis thaliana AT2G36610 D 0.616
TCM_022391 Theobroma cacao TCM_022391 I 0.616
PRUPE_ppa015952mg Prunus persica PRUPE_ppa015952mg I 0.616
mgf022748m Mimulus guttatus mgf022748m I 0.614
Gorai.002G244200 Gossypium raimondii Gorai.002G244200 I 0.612
POPTR_0006s11890 Populus trichocarpa POPTR_0006s11890 I 0.612
cassava14646.m1 Manihot esculenta cassava14646.m1 I 0.612
Lus10035583.g Linum usitatissimum Lus10035583.g I 0.612
Lus10008641.g Linum usitatissimum Lus10008641.g I 0.612
29815.m000499 Ricinus communis 29815.m000499 I 0.612
cassava34082.m1 Manihot esculenta cassava34082.m1 I 0.612
Cla018017 Citrullus lanatus Cla018017 I 0.612
Cucsa.378700 Cucumis sativus Cucsa.378700 I 0.612
evm.TU.supercontig_5.106 Carica papaya evm.TU.supercontig_5.106 I 0.612
Gorai.009G409600 Gossypium raimondii Gorai.009G409600 I 0.612
MDP0000119544 Malus domestica MDP0000119544 I 0.611
PGSC0003DMG400002692 Solanum tuberosum PGSC0003DMG400002692 I 0.611
Solyc09g008810.2 Solanum lycopersicum Solyc09g008810.2 I 0.611
VIT_08s0007g04200 Vitis vinifera VIT_08s0007g04200 I 0.611
MDP0000738604 Malus domestica MDP0000738604 I 0.611
MDP0000134241 Malus domestica MDP0000134241 I 0.611
GLYMA13G21330 Glycine max GLYMA13G21330 I 0.608
GLYMA10G07440 Glycine max GLYMA10G07440 I 0.608
LjSGA_022706.2 Lotus japonicus LjSGA_022706.2 I 0.608
Cucsa.125070 Cucumis sativus Cucsa.125070 I 0.607
Bo2g005230 Brassica oleracea Bo2g005230 I 0.607
Bra028820 Brassica rapa Bra028820 I 0.607
Cla018641 Citrullus lanatus Cla018641 I 0.607
Gorai.002G244000 Gossypium raimondii Gorai.002G244000 I 0.607
Thhalv10017567m.g Eutrema salsugineum Thhalv10017567m.g I 0.605
PK15535.1 Cannabis sativa PK15535.1 I 0.604
mgf019824m Mimulus guttatus mgf019824m I 0.604
gene30097-v1.0-hybrid Fragaria vesca gene30097-v1.0-hybrid I 0.604
Ciclev10012525m.g Citrus clementina Ciclev10012525m.g I 0.602
orange1.1g040769m.g Citrus sinensis orange1.1g040769m.g I 0.602
SapurV1A.0226s0110 Salix purpurea SapurV1A.0226s0110 I 0.599