Carubv10002440m.g (Capsella rubella)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Carubv10002440m.g T228272_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-51
M00867_2.00 		Arabidopsis thaliana
ATWATKNN
NNMATWAT		 PBM
Franco-Zorrilla et al.(2014)
ATHB51 		0.834 0.982
ATHB-51
M06927_2.00 		Arabidopsis thaliana
DNCAATAATTGAD
HTCAATTATTGNH		 Dap-seq
OMalley et al.(2016)
LMI1_col_a 		0.834 0.982
ATHB-51
M06928_2.00 		Arabidopsis thaliana
NDNCAATAATTGA
TCAATTATTGNHN		 Dap-seq
OMalley et al.(2016)
LMI1_colamp_a 		0.834 0.982
ATHB-22
M02041_2.00 		Arabidopsis thaliana
NNATAATWWWNNN
NNNWWWATTATNN		 PBM
Weirauch et al.(2014)
pTH5883 		0.779 0.732
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.711 0.589
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.711 0.589
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.691 0.589
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.691 0.589
estExt_gwp_gw1.C_70211
M02220_2.00 		Physcomitrella patens
HMATNANDNN
NNHNTNATKD		 PBM
Weirauch et al.(2014)
pTH8489 		0.602 0.643
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10002440m Homeodomain 78 133

Links

Other Homeodomain family TFs
Other Capsella rubella TFs

258 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.0154s0025 Capsella grandiflora Cagra.0154s0025 I 0.867
ATHB-51 Arabidopsis thaliana AT5G03790 D 0.834
Bo9g181720 Brassica oleracea Bo9g181720 I 0.834
Bra009510 Brassica rapa Bra009510 I 0.834
ATHB51 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000249 I 0.834
Bostr.2128s0071 Boechera stricta Bostr.2128s0071 I 0.834
Thhalv10014547m.g Eutrema salsugineum Thhalv10014547m.g I 0.834
Bo3g002560 Brassica oleracea Bo3g002560 I 0.830
Cla018017 Citrullus lanatus Cla018017 I 0.823
Cucsa.378700 Cucumis sativus Cucsa.378700 I 0.823
PGSC0003DMG400002692 Solanum tuberosum PGSC0003DMG400002692 I 0.821
Solyc09g008810.2 Solanum lycopersicum Solyc09g008810.2 I 0.821
Bo2g005230 Brassica oleracea Bo2g005230 I 0.818
Bra028820 Brassica rapa Bra028820 I 0.818
mgf019824m Mimulus guttatus mgf019824m I 0.811
mgf022748m Mimulus guttatus mgf022748m I 0.795
POPTR_0006s11890 Populus trichocarpa POPTR_0006s11890 I 0.791
29815.m000499 Ricinus communis 29815.m000499 I 0.791
cassava14646.m1 Manihot esculenta cassava14646.m1 I 0.791
Gorai.002G244200 Gossypium raimondii Gorai.002G244200 I 0.791
MDP0000119544 Malus domestica MDP0000119544 I 0.790
MDP0000134241 Malus domestica MDP0000134241 I 0.790
MDP0000738604 Malus domestica MDP0000738604 I 0.790
PRUPE_ppa015952mg Prunus persica PRUPE_ppa015952mg I 0.787
TCM_022391 Theobroma cacao TCM_022391 I 0.787
Pm026270 Prunus mume Pm026270 I 0.787
cassava34082.m1 Manihot esculenta cassava34082.m1 I 0.787
evm.TU.supercontig_5.106 Carica papaya evm.TU.supercontig_5.106 I 0.787
Gorai.002G244000 Gossypium raimondii Gorai.002G244000 I 0.787
Gorai.009G409600 Gossypium raimondii Gorai.009G409600 I 0.787
Lus10008641.g Linum usitatissimum Lus10008641.g I 0.787
Lus10035583.g Linum usitatissimum Lus10035583.g I 0.787
Carubv10003464m.g Capsella rubella Carubv10003464m.g I 0.780
ATHB-22 Arabidopsis thaliana AT2G36610 D 0.779
SapurV1A.0226s0110 Salix purpurea SapurV1A.0226s0110 I 0.778
gene30097-v1.0-hybrid Fragaria vesca gene30097-v1.0-hybrid I 0.776
PK15535.1 Cannabis sativa PK15535.1 I 0.776
Cagra.0463s0004 Capsella grandiflora Cagra.0463s0004 I 0.771
Thhalv10017567m.g Eutrema salsugineum Thhalv10017567m.g I 0.768
GLYMA10G07440 Glycine max GLYMA10G07440 I 0.765
GLYMA13G21330 Glycine max GLYMA13G21330 I 0.765
VIT_08s0007g04200 Vitis vinifera VIT_08s0007g04200 I 0.764
Cla018641 Citrullus lanatus Cla018641 I 0.761
Cucsa.125070 Cucumis sativus Cucsa.125070 I 0.761
LjSGA_022706.2 Lotus japonicus LjSGA_022706.2 I 0.761
Ciclev10012525m.g Citrus clementina Ciclev10012525m.g I 0.759
orange1.1g040769m.g Citrus sinensis orange1.1g040769m.g I 0.759
Bostr.23794s0432 Boechera stricta Bostr.23794s0432 I 0.756
Cagra.0228s0052 Capsella grandiflora Cagra.0228s0052 I 0.756
Carubv10024148m.g Capsella rubella Carubv10024148m.g I 0.756
Thhalv10015784m.g Eutrema salsugineum Thhalv10015784m.g I 0.756
Bo4g034490 Brassica oleracea Bo4g034490 I 0.748
Bra005259 Brassica rapa Bra005259 I 0.748
ATHB22 Arabidopsis lyrata Al_scaffold_0004_2163 I 0.742
Eucgr.A01575 Eucalyptus grandis Eucgr.A01575 I 0.737
Al_scaffold_0006_290 Arabidopsis lyrata Al_scaffold_0006_290 I 0.721
Bostr.2128s0069 Boechera stricta Bostr.2128s0069 I 0.719
VIT_18s0001g06430 Vitis vinifera VIT_18s0001g06430 I 0.718
HAT7 Arabidopsis thaliana AT5G15150 I 0.711
Bo2g012410 Brassica oleracea Bo2g012410 I 0.711
Bo3g010120 Brassica oleracea Bo3g010120 I 0.711
Bo9g165360 Brassica oleracea Bo9g165360 I 0.711
Bra006285 Brassica rapa Bra006285 I 0.711
Bra008717 Brassica rapa Bra008717 I 0.711
Bra023506 Brassica rapa Bra023506 I 0.711
ATHB-3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001192 I 0.711
GLYMA09G37410 Glycine max GLYMA09G37410 I 0.711
GLYMA18G49290 Glycine max GLYMA18G49290 I 0.711
GLYMA19G02490 Glycine max GLYMA19G02490 I 0.711
GSMUA_Achr10G18860_001 Musa acuminata GSMUA_Achr10G18860_001 I 0.711
GSMUA_Achr4G00550_001 Musa acuminata GSMUA_Achr4G00550_001 I 0.711
GSMUA_Achr6G36450_001 Musa acuminata GSMUA_Achr6G36450_001 I 0.711
MTR_6g011610 Medicago truncatula MTR_6g011610 I 0.711
POPTR_0017s11800 Populus trichocarpa POPTR_0017s11800 I 0.711
PRUPE_ppa020465mg Prunus persica PRUPE_ppa020465mg I 0.711
TCM_018470 Theobroma cacao TCM_018470 I 0.711
Ca_10527 Cicer arietinum Ca_10527 I 0.711
Cla010510 Citrullus lanatus Cla010510 I 0.711
Pm015861 Prunus mume Pm015861 I 0.711
29822.m003500 Ricinus communis 29822.m003500 I 0.711
cassava13234.valid.m1 Manihot esculenta cassava13234.valid.m1 I 0.711
cassava39955.m1 Manihot esculenta cassava39955.m1 I 0.711
Cucsa.158420 Cucumis sativus Cucsa.158420 I 0.711
Bostr.2902s0249 Boechera stricta Bostr.2902s0249 I 0.711
Cagra.1036s0042 Capsella grandiflora Cagra.1036s0042 I 0.711
Carubv10001498m.g Capsella rubella Carubv10001498m.g I 0.711
Ciclev10012352m.g Citrus clementina Ciclev10012352m.g I 0.711
evm.TU.supercontig_14.18 Carica papaya evm.TU.supercontig_14.18 I 0.711
gene28322-v1.0-hybrid Fragaria vesca gene28322-v1.0-hybrid I 0.711
Gorai.001G256300 Gossypium raimondii Gorai.001G256300 I 0.711
Gorai.006G022100 Gossypium raimondii Gorai.006G022100 I 0.711
MDP0000124827 Malus domestica MDP0000124827 I 0.711
MDP0000737128 Malus domestica MDP0000737128 I 0.711
orange1.1g041877m.g Citrus sinensis orange1.1g041877m.g I 0.711
SapurV1A.1260s0050 Salix purpurea SapurV1A.1260s0050 I 0.711
SapurV1A.2065s0030 Salix purpurea SapurV1A.2065s0030 I 0.711
Thhalv10014157m.g Eutrema salsugineum Thhalv10014157m.g I 0.711
PK20392.1 Cannabis sativa PK20392.1 D 0.711
chr2.LjT39I02.10.nc Lotus japonicus chr2.LjT39I02.10.nc I 0.711
Aquca_009_01021 Aquilegia coerulea Aquca_009_01021 I 0.709
MTR_1g061660 Medicago truncatula MTR_1g061660 I 0.707
Cagra.0154s0024 Capsella grandiflora Cagra.0154s0024 I 0.706
GSMUA_Achr6G10660_001 Musa acuminata GSMUA_Achr6G10660_001 I 0.705
Carubv10002831m.g Capsella rubella Carubv10002831m.g I 0.705
BRADI4G35910 Brachypodium distachyon BRADI4G35910 I 0.704
Eucgr.I01934 Eucalyptus grandis Eucgr.I01934 I 0.703
Eucgr.I02255 Eucalyptus grandis Eucgr.I02255 I 0.692
ATHB-20 Arabidopsis thaliana AT3G01220 D 0.691
Bo1g158730 Brassica oleracea Bo1g158730 I 0.691
Bra039135 Brassica rapa Bra039135 I 0.691
ATHB20 Arabidopsis lyrata scaffold_300109.1 I 0.691
Bostr.1460s0094 Boechera stricta Bostr.1460s0094 I 0.691
Cagra.1390s0021 Capsella grandiflora Cagra.1390s0021 I 0.691
Carubv10014214m.g Capsella rubella Carubv10014214m.g I 0.691
Thhalv10021334m.g Eutrema salsugineum Thhalv10021334m.g I 0.691
Ca_20151 Cicer arietinum Ca_20151 I 0.689
Bo12274s010 Brassica oleracea Bo12274s010 I 0.687
Cagra.4622s0007 Capsella grandiflora Cagra.4622s0007 I 0.683
Carubv10027280m.g Capsella rubella Carubv10027280m.g I 0.683
GLYMA13G05270 Glycine max GLYMA13G05270 I 0.678
evm.TU.supercontig_80.1 Carica papaya evm.TU.supercontig_80.1 I 0.678
AMTR_s00027p00144540 Amborella trichopoda AMTR_s00027p00144540 I 0.677
GRMZM2G034113 Zea mays GRMZM2G034113 I 0.673
GRMZM2G041462 Zea mays GRMZM2G041462 I 0.673
Sb02g030660 Sorghum bicolor Sb02g030660 I 0.673
Si030983m.g Setaria italica Si030983m.g I 0.673
Pavir.Ba01249 Panicum virgatum Pavir.Ba01249 I 0.673
Pavir.Bb02633 Panicum virgatum Pavir.Bb02633 I 0.673
MTR_7g103340 Medicago truncatula MTR_7g103340 I 0.670
Eucgr.A01421 Eucalyptus grandis Eucgr.A01421 I 0.670
SapurV1A.3101s0010 Salix purpurea SapurV1A.3101s0010 I 0.669
PGSC0003DMG400031777 Solanum tuberosum PGSC0003DMG400031777 I 0.668
Solyc02g077590.1 Solanum lycopersicum Solyc02g077590.1 I 0.668
GLYMA19G37380 Glycine max GLYMA19G37380 I 0.667
Ca_00750 Cicer arietinum Ca_00750 I 0.667
PRUPE_ppa010647mg Prunus persica PRUPE_ppa010647mg I 0.666
Pm018314 Prunus mume Pm018314 I 0.666
gene18656-v1.0-hybrid Fragaria vesca gene18656-v1.0-hybrid I 0.666
POPTR_0017s04820 Populus trichocarpa POPTR_0017s04820 I 0.665
29983.m003123 Ricinus communis 29983.m003123 I 0.665
SapurV1A.2554s0010 Salix purpurea SapurV1A.2554s0010 I 0.665
Ciclev10009522m.g Citrus clementina Ciclev10009522m.g I 0.655
orange1.1g035661m.g Citrus sinensis orange1.1g035661m.g I 0.655
ATHB-52 Arabidopsis thaliana AT5G53980 I 0.652
Bo2g042250 Brassica oleracea Bo2g042250 I 0.652
Bra022687 Brassica rapa Bra022687 I 0.652
ATHB52 Arabidopsis lyrata fgenesh2_kg.8__1293__AT5G53980.1 I 0.652
VIT_16s0098g01170 Vitis vinifera VIT_16s0098g01170 I 0.652
Bostr.26833s0878 Boechera stricta Bostr.26833s0878 I 0.652
Thhalv10014905m.g Eutrema salsugineum Thhalv10014905m.g I 0.652
GLYMA06G35050 Glycine max GLYMA06G35050 I 0.647
VIT_10s0003g00380 Vitis vinifera VIT_10s0003g00380 I 0.647
GLYMA03G34710 Glycine max GLYMA03G34710 I 0.644
Pavir.Hb01447 Panicum virgatum Pavir.Hb01447 I 0.643
Gorai.007G206000 Gossypium raimondii Gorai.007G206000 I 0.639
VIT_19s0014g02110 Vitis vinifera VIT_19s0014g02110 I 0.638
Gorai.012G055400 Gossypium raimondii Gorai.012G055400 I 0.635
MDP0000311522 Malus domestica MDP0000311522 I 0.633
Aquca_007_00158 Aquilegia coerulea Aquca_007_00158 I 0.631
PGSC0003DMG400021278 Solanum tuberosum PGSC0003DMG400021278 I 0.628
POPTR_0001s40540 Populus trichocarpa POPTR_0001s40540 I 0.626
POPTR_0011s11510 Populus trichocarpa POPTR_0011s11510 I 0.626
PRUPE_ppa017711mg Prunus persica PRUPE_ppa017711mg I 0.626
TCM_031644 Theobroma cacao TCM_031644 I 0.626
Pm011328 Prunus mume Pm011328 I 0.626
mgf013301m Mimulus guttatus mgf013301m I 0.626
Gorai.002G067100 Gossypium raimondii Gorai.002G067100 I 0.626
Lus10003492.g Linum usitatissimum Lus10003492.g I 0.626
Lus10013103.g Linum usitatissimum Lus10013103.g I 0.626
SapurV1A.0207s0080 Salix purpurea SapurV1A.0207s0080 I 0.626
SapurV1A.0817s0120 Salix purpurea SapurV1A.0817s0120 I 0.626
POPTR_0007s01370 Populus trichocarpa POPTR_0007s01370 I 0.625
MDP0000146339 Malus domestica MDP0000146339 I 0.624
MDP0000909160 Malus domestica MDP0000909160 I 0.624
Bo9g181710 Brassica oleracea Bo9g181710 I 0.623
PGSC0003DMG400012682 Solanum tuberosum PGSC0003DMG400012682 I 0.623
Solyc02g062960.2 Solanum lycopersicum Solyc02g062960.2 I 0.623
Solyc02g085630.2 Solanum lycopersicum Solyc02g085630.2 I 0.623
GSMUA_Achr9G14960_001 Musa acuminata GSMUA_Achr9G14960_001 I 0.619
PGSC0003DMG400018509 Solanum tuberosum PGSC0003DMG400018509 I 0.619
Solyc03g082550.2 Solanum lycopersicum Solyc03g082550.2 I 0.619
Bo7g064620 Brassica oleracea Bo7g064620 I 0.618
Solyc06g053220.2 Solanum lycopersicum Solyc06g053220.2 I 0.618
Cla002451 Citrullus lanatus Cla002451 I 0.618
Solyc07g062790.1 Solanum lycopersicum Solyc07g062790.1 I 0.616
PGSC0003DMG402012439 Solanum tuberosum PGSC0003DMG402012439 I 0.615
Bo4g100070 Brassica oleracea Bo4g100070 I 0.613
AMTR_s00059p00141510 Amborella trichopoda AMTR_s00059p00141510 I 0.612
PGSC0003DMG400005472 Solanum tuberosum PGSC0003DMG400005472 I 0.612
ATHB-23 Arabidopsis thaliana AT1G26960 I 0.611
Bo8g076330 Brassica oleracea Bo8g076330 I 0.611
Bra016300 Brassica rapa Bra016300 I 0.611
Bra018155 Brassica rapa Bra018155 I 0.611
AtHB23 Arabidopsis lyrata fgenesh2_kg.1__2657__AT1G26960.1 I 0.611
PGSC0003DMG400017775 Solanum tuberosum PGSC0003DMG400017775 I 0.611
PGSC0003DMG400017776 Solanum tuberosum PGSC0003DMG400017776 I 0.611
PGSC0003DMG400017787 Solanum tuberosum PGSC0003DMG400017787 I 0.611
Solyc03g034110.2 Solanum lycopersicum Solyc03g034110.2 I 0.611
mgf025174m Mimulus guttatus mgf025174m I 0.611
Bostr.12659s0299 Boechera stricta Bostr.12659s0299 I 0.611
Cagra.1150s0002 Capsella grandiflora Cagra.1150s0002 I 0.611
Carubv10010076m.g Capsella rubella Carubv10010076m.g I 0.611
Thhalv10008487m.g Eutrema salsugineum Thhalv10008487m.g I 0.611
e_gw1.34.11.1 Physcomitrella patens e_gw1.34.11.1 I 0.607
Solyc03g034130.2 Solanum lycopersicum Solyc03g034130.2 I 0.605
gene24976-v1.0-hybrid Fragaria vesca gene24976-v1.0-hybrid I 0.605
AT1G27045 Arabidopsis thaliana AT1G27045 I 0.604
Cla014413 Citrullus lanatus Cla014413 I 0.603
Cucsa.104950 Cucumis sativus Cucsa.104950 I 0.603
GSMUA_Achr10G24810_001 Musa acuminata GSMUA_Achr10G24810_001 I 0.602
GSMUA_Achr10G30330_001 Musa acuminata GSMUA_Achr10G30330_001 I 0.602
GSMUA_Achr6G10310_001 Musa acuminata GSMUA_Achr6G10310_001 I 0.602
MTR_8g089895 Medicago truncatula MTR_8g089895 I 0.602
PGSC0003DMG400016148 Solanum tuberosum PGSC0003DMG400016148 I 0.602
Sb07g029150 Sorghum bicolor Sb07g029150 I 0.602
SELMODRAFT_108871 Selaginella moellendorffii SELMODRAFT_108871 I 0.602
SELMODRAFT_18196 Selaginella moellendorffii SELMODRAFT_18196 I 0.602
SELMODRAFT_19476 Selaginella moellendorffii SELMODRAFT_19476 I 0.602
SELMODRAFT_97273 Selaginella moellendorffii SELMODRAFT_97273 I 0.602
Solyc11g010270.1 Solanum lycopersicum Solyc11g010270.1 I 0.602
VIT_07s0191g00180 Vitis vinifera VIT_07s0191g00180 I 0.602
Cla014344 Citrullus lanatus Cla014344 I 0.602
Cucsa.104200 Cucumis sativus Cucsa.104200 I 0.602
e_gw1.31.11.1 Physcomitrella patens e_gw1.31.11.1 I 0.602
e_gw1.431.18.1 Physcomitrella patens e_gw1.431.18.1 I 0.602
e_gw1.65.5.1 Physcomitrella patens e_gw1.65.5.1 I 0.602
estExt_fgenesh2_pm.C_1080004 Physcomitrella patens estExt_fgenesh2_pm.C_1080004 I 0.602
estExt_gwp_gw1.C_70211 Physcomitrella patens estExt_gwp_gw1.C_70211 D 0.602
gw1.28.15.1 Physcomitrella patens gw1.28.15.1 I 0.602
gw1.34.13.1 Physcomitrella patens gw1.34.13.1 I 0.602
gw1.65.7.1 Physcomitrella patens gw1.65.7.1 I 0.602
gw1.77.4.1 Physcomitrella patens gw1.77.4.1 I 0.602
Eucgr.H04742 Eucalyptus grandis Eucgr.H04742 I 0.602
evm.TU.supercontig_55.70 Carica papaya evm.TU.supercontig_55.70 I 0.602
Gorai.011G111500 Gossypium raimondii Gorai.011G111500 I 0.602
Lus10023159.g Linum usitatissimum Lus10023159.g I 0.602
Solyc03g034120.2 Solanum lycopersicum Solyc03g034120.2 I 0.601
GSMUA_Achr7G12740_001 Musa acuminata GSMUA_Achr7G12740_001 I 0.600
SELMODRAFT_129907 Selaginella moellendorffii SELMODRAFT_129907 I 0.600
SELMODRAFT_81609 Selaginella moellendorffii SELMODRAFT_81609 I 0.600
AC233899.1_FG004 Zea mays AC233899.1_FG004 I 0.599
AMTR_s00040p00235500 Amborella trichopoda AMTR_s00040p00235500 I 0.599
Bo3g153930 Brassica oleracea Bo3g153930 I 0.599
MTR_5g019650 Medicago truncatula MTR_5g019650 I 0.599
MTR_5g019680 Medicago truncatula MTR_5g019680 I 0.599
PRUPE_ppa011343mg Prunus persica PRUPE_ppa011343mg I 0.599
Ca_02070 Cicer arietinum Ca_02070 I 0.599
Cla014769 Citrullus lanatus Cla014769 I 0.599
Pm026578 Prunus mume Pm026578 I 0.599
cassava4525.m1 Manihot esculenta cassava4525.m1 I 0.599
cassava45495.m1 Manihot esculenta cassava45495.m1 I 0.599
Cucsa.201240 Cucumis sativus Cucsa.201240 I 0.599
Gorai.003G016600 Gossypium raimondii Gorai.003G016600 I 0.599
Gorai.007G051100 Gossypium raimondii Gorai.007G051100 I 0.599
Lus10024031.g Linum usitatissimum Lus10024031.g I 0.599
Lus10041719.g Linum usitatissimum Lus10041719.g I 0.599
MDP0000230511 Malus domestica MDP0000230511 I 0.599
SapurV1A.0255s0060 Salix purpurea SapurV1A.0255s0060 I 0.599