gene18656-v1.0-hybrid (Fragaria vesca)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 gene18656-v1.0-hybrid T228618_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-12
M00865_2.00 		Arabidopsis thaliana
NNNNNNNN
NNNNNNNN		 PBM
Franco-Zorrilla et al.(2014)
ATHB12 		0.713 0.825
ATHB-12
M02045_2.00 		Arabidopsis thaliana
BHWWWWWWDV
BHWWWWWWDV		 PBM
Weirauch et al.(2014)
pTH7207 		0.713 0.825
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.684 0.632
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.684 0.632
ATHB-51
M00867_2.00 		Arabidopsis thaliana
ATWATKNN
NNMATWAT		 PBM
Franco-Zorrilla et al.(2014)
ATHB51 		0.666 0.526
ATHB-51
M06927_2.00 		Arabidopsis thaliana
DNCAATAATTGAD
HTCAATTATTGNH		 Dap-seq
OMalley et al.(2016)
LMI1_col_a 		0.666 0.526
ATHB-51
M06928_2.00 		Arabidopsis thaliana
NDNCAATAATTGA
TCAATTATTGNHN		 Dap-seq
OMalley et al.(2016)
LMI1_colamp_a 		0.666 0.526
Q39944_HELAN
M10802_2.00 		Helianthus annuus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HAHB4_01 		0.666 0.649
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.664 0.596
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.664 0.596
ATHB-22
M02041_2.00 		Arabidopsis thaliana
NNATAATWWWNNN
NNNWWWATTATNN		 PBM
Weirauch et al.(2014)
pTH5883 		0.663 0.509
ATHB-7
M02043_2.00 		Arabidopsis thaliana
NHWTGATTGN
NCAATCAWDN		 PBM
Weirauch et al.(2014)
pTH8090 		0.637 0.860
ATHB-7
M06911_2.00 		Arabidopsis thaliana
NHYCAATCATTSW
WSAATGATTGRDN		 Dap-seq
OMalley et al.(2016)
ATHB7_col_a 		0.637 0.860
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna18656.1-v1.0-hybrid Homeodomain 38 94

Links

Other Homeodomain family TFs
Other Fragaria vesca TFs

257 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Eucgr.A01421 Eucalyptus grandis Eucgr.A01421 I 0.824
PRUPE_ppa010647mg Prunus persica PRUPE_ppa010647mg I 0.802
Pm018314 Prunus mume Pm018314 I 0.802
BRADI4G35910 Brachypodium distachyon BRADI4G35910 I 0.781
GRMZM2G041462 Zea mays GRMZM2G041462 I 0.781
Sb02g030660 Sorghum bicolor Sb02g030660 I 0.781
Si030983m.g Setaria italica Si030983m.g I 0.781
Pavir.Ba01249 Panicum virgatum Pavir.Ba01249 I 0.781
Pavir.Bb02633 Panicum virgatum Pavir.Bb02633 I 0.781
MDP0000311522 Malus domestica MDP0000311522 I 0.769
Aquca_009_01021 Aquilegia coerulea Aquca_009_01021 I 0.752
PGSC0003DMG400031777 Solanum tuberosum PGSC0003DMG400031777 I 0.741
Solyc02g077590.1 Solanum lycopersicum Solyc02g077590.1 I 0.741
GRMZM2G034113 Zea mays GRMZM2G034113 I 0.740
Thhalv10006221m.g Eutrema salsugineum Thhalv10006221m.g I 0.740
GLYMA06G35050 Glycine max GLYMA06G35050 I 0.724
VIT_16s0098g01170 Vitis vinifera VIT_16s0098g01170 I 0.720
PK15571.1 Cannabis sativa PK15571.1 I 0.718
MDP0000316497 Malus domestica MDP0000316497 I 0.717
AMTR_s00027p00144540 Amborella trichopoda AMTR_s00027p00144540 I 0.716
ATHB-12 Arabidopsis thaliana AT3G61890 D 0.713
Bo8g097390 Brassica oleracea Bo8g097390 I 0.713
Bra007637 Brassica rapa Bra007637 I 0.713
ATHB-12 Arabidopsis lyrata fgenesh2_kg.5__2686__AT3G61890.1 I 0.713
Bo4g100070 Brassica oleracea Bo4g100070 I 0.708
Gorai.002G244000 Gossypium raimondii Gorai.002G244000 I 0.708
MTR_8g026960 Medicago truncatula MTR_8g026960 I 0.707
Ca_17608 Cicer arietinum Ca_17608 I 0.707
ATHB-52 Arabidopsis thaliana AT5G53980 I 0.703
ATHB52 Arabidopsis lyrata fgenesh2_kg.8__1293__AT5G53980.1 I 0.703
POPTR_0001s40540 Populus trichocarpa POPTR_0001s40540 I 0.701
SapurV1A.0207s0080 Salix purpurea SapurV1A.0207s0080 I 0.701
TCM_031644 Theobroma cacao TCM_031644 I 0.700
Ciclev10012525m.g Citrus clementina Ciclev10012525m.g I 0.700
Gorai.002G067100 Gossypium raimondii Gorai.002G067100 I 0.700
orange1.1g040769m.g Citrus sinensis orange1.1g040769m.g I 0.700
MTR_1g061660 Medicago truncatula MTR_1g061660 I 0.694
VIT_10s0003g00380 Vitis vinifera VIT_10s0003g00380 I 0.694
Bra014417 Brassica rapa Bra014417 I 0.693
MDP0000909160 Malus domestica MDP0000909160 I 0.693
GSMUA_Achr6G10660_001 Musa acuminata GSMUA_Achr6G10660_001 I 0.692
VIT_18s0001g06430 Vitis vinifera VIT_18s0001g06430 I 0.691
evm.TU.supercontig_80.1 Carica papaya evm.TU.supercontig_80.1 I 0.689
HAT7 Arabidopsis thaliana AT5G15150 I 0.686
Bo2g012410 Brassica oleracea Bo2g012410 I 0.686
Bo3g010120 Brassica oleracea Bo3g010120 I 0.686
Bra006285 Brassica rapa Bra006285 I 0.686
Bra023506 Brassica rapa Bra023506 I 0.686
ATHB-3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001192 I 0.686
GSMUA_Achr10G18860_001 Musa acuminata GSMUA_Achr10G18860_001 I 0.686
GSMUA_Achr4G00550_001 Musa acuminata GSMUA_Achr4G00550_001 I 0.686
Bostr.2902s0249 Boechera stricta Bostr.2902s0249 I 0.686
Cagra.1036s0042 Capsella grandiflora Cagra.1036s0042 I 0.686
Carubv10001498m.g Capsella rubella Carubv10001498m.g I 0.686
Gorai.001G152200 Gossypium raimondii Gorai.001G152200 I 0.686
Thhalv10014157m.g Eutrema salsugineum Thhalv10014157m.g I 0.686
GSMUA_Achr6G36450_001 Musa acuminata GSMUA_Achr6G36450_001 I 0.685
Bo9g165360 Brassica oleracea Bo9g165360 I 0.684
Bra008717 Brassica rapa Bra008717 I 0.684
GLYMA19G02490 Glycine max GLYMA19G02490 I 0.684
MTR_6g011610 Medicago truncatula MTR_6g011610 I 0.684
POPTR_0017s11800 Populus trichocarpa POPTR_0017s11800 I 0.684
PRUPE_ppa020465mg Prunus persica PRUPE_ppa020465mg I 0.684
TCM_018470 Theobroma cacao TCM_018470 I 0.684
Ca_10527 Cicer arietinum Ca_10527 I 0.684
Cla010510 Citrullus lanatus Cla010510 I 0.684
Pm015861 Prunus mume Pm015861 I 0.684
29822.m003500 Ricinus communis 29822.m003500 I 0.684
cassava13234.valid.m1 Manihot esculenta cassava13234.valid.m1 I 0.684
cassava39955.m1 Manihot esculenta cassava39955.m1 I 0.684
Cucsa.158420 Cucumis sativus Cucsa.158420 I 0.684
mgf020022m Mimulus guttatus mgf020022m I 0.684
Ciclev10012352m.g Citrus clementina Ciclev10012352m.g I 0.684
Eucgr.I01934 Eucalyptus grandis Eucgr.I01934 I 0.684
Eucgr.I02255 Eucalyptus grandis Eucgr.I02255 I 0.684
evm.TU.supercontig_14.18 Carica papaya evm.TU.supercontig_14.18 I 0.684
gene28322-v1.0-hybrid Fragaria vesca gene28322-v1.0-hybrid I 0.684
Gorai.001G256300 Gossypium raimondii Gorai.001G256300 I 0.684
Gorai.006G022100 Gossypium raimondii Gorai.006G022100 I 0.684
MDP0000124827 Malus domestica MDP0000124827 I 0.684
MDP0000737128 Malus domestica MDP0000737128 I 0.684
orange1.1g041877m.g Citrus sinensis orange1.1g041877m.g I 0.684
SapurV1A.1260s0050 Salix purpurea SapurV1A.1260s0050 I 0.684
SapurV1A.2065s0030 Salix purpurea SapurV1A.2065s0030 I 0.684
PK20392.1 Cannabis sativa PK20392.1 D 0.684
chr2.LjT39I02.10.nc Lotus japonicus chr2.LjT39I02.10.nc I 0.684
GLYMA09G37410 Glycine max GLYMA09G37410 I 0.683
GLYMA18G49290 Glycine max GLYMA18G49290 I 0.683
Bostr.13158s0194 Boechera stricta Bostr.13158s0194 I 0.681
Cagra.0483s0055 Capsella grandiflora Cagra.0483s0055 I 0.681
Carubv10017952m.g Capsella rubella Carubv10017952m.g I 0.681
PGSC0003DMG400002692 Solanum tuberosum PGSC0003DMG400002692 I 0.677
Solyc09g008810.2 Solanum lycopersicum Solyc09g008810.2 I 0.677
VIT_08s0007g04200 Vitis vinifera VIT_08s0007g04200 I 0.677
mgf022748m Mimulus guttatus mgf022748m I 0.677
MDP0000134241 Malus domestica MDP0000134241 I 0.677
GLYMA03G34710 Glycine max GLYMA03G34710 I 0.676
GLYMA10G07440 Glycine max GLYMA10G07440 I 0.676
GLYMA13G21330 Glycine max GLYMA13G21330 I 0.676
GLYMA19G37380 Glycine max GLYMA19G37380 I 0.676
POPTR_0006s11890 Populus trichocarpa POPTR_0006s11890 I 0.676
PRUPE_ppa015952mg Prunus persica PRUPE_ppa015952mg I 0.676
TCM_022391 Theobroma cacao TCM_022391 I 0.676
Cla018017 Citrullus lanatus Cla018017 I 0.676
Cla018641 Citrullus lanatus Cla018641 I 0.676
Pm026270 Prunus mume Pm026270 I 0.676
29815.m000499 Ricinus communis 29815.m000499 I 0.676
cassava14646.m1 Manihot esculenta cassava14646.m1 I 0.676
cassava34082.m1 Manihot esculenta cassava34082.m1 I 0.676
Cucsa.125070 Cucumis sativus Cucsa.125070 I 0.676
Cucsa.378700 Cucumis sativus Cucsa.378700 I 0.676
mgf019824m Mimulus guttatus mgf019824m I 0.676
evm.TU.supercontig_5.106 Carica papaya evm.TU.supercontig_5.106 I 0.676
Gorai.002G244200 Gossypium raimondii Gorai.002G244200 I 0.676
Gorai.009G409600 Gossypium raimondii Gorai.009G409600 I 0.676
Lus10008641.g Linum usitatissimum Lus10008641.g I 0.676
Lus10035583.g Linum usitatissimum Lus10035583.g I 0.676
MDP0000119544 Malus domestica MDP0000119544 I 0.676
MDP0000738604 Malus domestica MDP0000738604 I 0.676
SapurV1A.0226s0110 Salix purpurea SapurV1A.0226s0110 I 0.676
LjSGA_022706.2 Lotus japonicus LjSGA_022706.2 I 0.676
Bo2g042250 Brassica oleracea Bo2g042250 I 0.672
Bra022687 Brassica rapa Bra022687 I 0.672
VIT_19s0014g02110 Vitis vinifera VIT_19s0014g02110 I 0.672
Bostr.26833s0878 Boechera stricta Bostr.26833s0878 I 0.672
Cagra.4622s0007 Capsella grandiflora Cagra.4622s0007 I 0.672
Carubv10027280m.g Capsella rubella Carubv10027280m.g I 0.672
Thhalv10014905m.g Eutrema salsugineum Thhalv10014905m.g I 0.672
PRUPE_ppa017711mg Prunus persica PRUPE_ppa017711mg I 0.671
Pm011328 Prunus mume Pm011328 I 0.671
MDP0000146339 Malus domestica MDP0000146339 I 0.670
POPTR_0011s11510 Populus trichocarpa POPTR_0011s11510 I 0.669
Ca_04027 Cicer arietinum Ca_04027 I 0.668
ATHB-51 Arabidopsis thaliana AT5G03790 D 0.666
Bo3g002560 Brassica oleracea Bo3g002560 I 0.666
Bo9g181720 Brassica oleracea Bo9g181720 I 0.666
Bra009510 Brassica rapa Bra009510 I 0.666
ATHB51 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000249 I 0.666
Q39944_HELAN Helianthus annuus Q39944_HELAN D 0.666
Bostr.2128s0071 Boechera stricta Bostr.2128s0071 I 0.666
Cagra.0154s0025 Capsella grandiflora Cagra.0154s0025 I 0.666
Cagra.0463s0004 Capsella grandiflora Cagra.0463s0004 I 0.666
Carubv10002440m.g Capsella rubella Carubv10002440m.g I 0.666
Carubv10003464m.g Capsella rubella Carubv10003464m.g I 0.666
Thhalv10014547m.g Eutrema salsugineum Thhalv10014547m.g I 0.666
Thhalv10015784m.g Eutrema salsugineum Thhalv10015784m.g I 0.666
ATHB-20 Arabidopsis thaliana AT3G01220 D 0.664
Bo1g158730 Brassica oleracea Bo1g158730 I 0.664
Bra039135 Brassica rapa Bra039135 I 0.664
ATHB20 Arabidopsis lyrata scaffold_300109.1 I 0.664
Bostr.1460s0094 Boechera stricta Bostr.1460s0094 I 0.664
Cagra.1390s0021 Capsella grandiflora Cagra.1390s0021 I 0.664
Carubv10014214m.g Capsella rubella Carubv10014214m.g I 0.664
gene30097-v1.0-hybrid Fragaria vesca gene30097-v1.0-hybrid I 0.664
Gorai.008G128000 Gossypium raimondii Gorai.008G128000 I 0.664
Thhalv10021334m.g Eutrema salsugineum Thhalv10021334m.g I 0.664
PK15535.1 Cannabis sativa PK15535.1 I 0.664
ATHB-22 Arabidopsis thaliana AT2G36610 D 0.663
Bo4g034490 Brassica oleracea Bo4g034490 I 0.663
Bra005259 Brassica rapa Bra005259 I 0.663
PGSC0003DMG402012439 Solanum tuberosum PGSC0003DMG402012439 I 0.663
cassava29430.valid.m1 Manihot esculenta cassava29430.valid.m1 I 0.663
cassava29431.valid.m1 Manihot esculenta cassava29431.valid.m1 I 0.663
Bostr.23794s0432 Boechera stricta Bostr.23794s0432 I 0.663
Cagra.0228s0052 Capsella grandiflora Cagra.0228s0052 I 0.663
Carubv10024148m.g Capsella rubella Carubv10024148m.g I 0.663
Pavir.Hb01447 Panicum virgatum Pavir.Hb01447 I 0.662
Solyc07g062790.1 Solanum lycopersicum Solyc07g062790.1 I 0.660
mgf013301m Mimulus guttatus mgf013301m I 0.660
Lus10003492.g Linum usitatissimum Lus10003492.g I 0.660
Lus10013103.g Linum usitatissimum Lus10013103.g I 0.660
mgf025174m Mimulus guttatus mgf025174m I 0.659
POPTR_0002s17680 Populus trichocarpa POPTR_0002s17680 I 0.658
TCM_005074 Theobroma cacao TCM_005074 I 0.658
27964.m000347 Ricinus communis 27964.m000347 I 0.658
evm.TU.supercontig_144.7 Carica papaya evm.TU.supercontig_144.7 I 0.658
SapurV1A.0003s0740 Salix purpurea SapurV1A.0003s0740 I 0.658
SapurV1A.0162s0050 Salix purpurea SapurV1A.0162s0050 I 0.658
ATHB22 Arabidopsis lyrata Al_scaffold_0004_2163 I 0.657
PGSC0003DMG400018509 Solanum tuberosum PGSC0003DMG400018509 I 0.655
Solyc03g082550.2 Solanum lycopersicum Solyc03g082550.2 I 0.655
Ciclev10021877m.g Citrus clementina Ciclev10021877m.g I 0.655
evm.TU.supercontig_3.138 Carica papaya evm.TU.supercontig_3.138 I 0.655
orange1.1g025886m.g Citrus sinensis orange1.1g025886m.g I 0.655
Bo2g005230 Brassica oleracea Bo2g005230 I 0.654
Bra028820 Brassica rapa Bra028820 I 0.654
POPTR_0017s04820 Populus trichocarpa POPTR_0017s04820 I 0.654
29983.m003123 Ricinus communis 29983.m003123 I 0.654
30089.m001006 Ricinus communis 30089.m001006 I 0.654
SapurV1A.2554s0010 Salix purpurea SapurV1A.2554s0010 I 0.654
SapurV1A.3101s0010 Salix purpurea SapurV1A.3101s0010 I 0.654
cassava29803.valid.m1 Manihot esculenta cassava29803.valid.m1 I 0.653
Gorai.007G111400 Gossypium raimondii Gorai.007G111400 I 0.653
GLYMA13G05270 Glycine max GLYMA13G05270 I 0.651
gene24976-v1.0-hybrid Fragaria vesca gene24976-v1.0-hybrid I 0.651
Bo12274s010 Brassica oleracea Bo12274s010 I 0.650
POPTR_0014s09860 Populus trichocarpa POPTR_0014s09860 I 0.650
Lus10030214.g Linum usitatissimum Lus10030214.g I 0.650
VIT_15s0048g02870 Vitis vinifera VIT_15s0048g02870 I 0.648
Ciclev10022365m.g Citrus clementina Ciclev10022365m.g I 0.648
Eucgr.A01575 Eucalyptus grandis Eucgr.A01575 I 0.648
orange1.1g029280m.g Citrus sinensis orange1.1g029280m.g I 0.648
MTR_7g103340 Medicago truncatula MTR_7g103340 I 0.645
Ca_00750 Cicer arietinum Ca_00750 I 0.645
cassava39514.m1 Manihot esculenta cassava39514.m1 I 0.643
Thhalv10017567m.g Eutrema salsugineum Thhalv10017567m.g I 0.643
OB04G27300 Oryza brachyantha OB04G27300 I 0.640
Lus10008840.g Linum usitatissimum Lus10008840.g I 0.639
Lus10032952.g Linum usitatissimum Lus10032952.g I 0.639
PGSC0003DMG400021278 Solanum tuberosum PGSC0003DMG400021278 I 0.638
ATHB-7 Arabidopsis thaliana AT2G46680 D 0.637
scaffold_403638.1 Arabidopsis lyrata scaffold_403638.1 I 0.637
scaffold_403640.1 Arabidopsis lyrata scaffold_403640.1 I 0.637
Cla002451 Citrullus lanatus Cla002451 I 0.637
Bostr.25993s0098 Boechera stricta Bostr.25993s0098 I 0.637
BGIOSGA016852 Oryza indica BGIOSGA016852 I 0.636
BRADI5G17170 Brachypodium distachyon BRADI5G17170 I 0.636
F775_29232 Aegilops tauschii F775_29232 I 0.636
GLYMA04G40960 Glycine max GLYMA04G40960 I 0.636
GLYMA06G13890 Glycine max GLYMA06G13890 I 0.636
GRMZM2G351330 Zea mays GRMZM2G351330 I 0.636
GRMZM2G396527 Zea mays GRMZM2G396527 I 0.636
LPERR04G16440 Leersia perrieri LPERR04G16440 I 0.636
MLOC_70350 Hordeum vulgare MLOC_70350 I 0.636
MTR_3g092150 Medicago truncatula MTR_3g092150 I 0.636
OBART04G20320 Oryza barthii OBART04G20320 I 0.636
OGLUM04G20240 Oryza glumaepatula OGLUM04G20240 I 0.636
ONIVA04G18550 Oryza nivara ONIVA04G18550 I 0.636
OPUNC04G17950 Oryza punctata OPUNC04G17950 I 0.636
ORGLA04G0173700 Oryza glaberrima ORGLA04G0173700 I 0.636
ORUFI04G21910 Oryza rufipogon ORUFI04G21910 I 0.636
Sb06g024000 Sorghum bicolor Sb06g024000 I 0.636
Si010550m.g Setaria italica Si010550m.g I 0.636
Traes_2BL_B69300543 Triticum aestivum Traes_2BL_B69300543 I 0.636
Pavir.Ga00670 Panicum virgatum Pavir.Ga00670 I 0.636
VIT_02s0025g02590 Vitis vinifera VIT_02s0025g02590 I 0.635
Gorai.004G123500 Gossypium raimondii Gorai.004G123500 I 0.634
Gorai.004G123100 Gossypium raimondii Gorai.004G123100 I 0.633
Bo4g007060 Brassica oleracea Bo4g007060 I 0.631
Bra004516 Brassica rapa Bra004516 I 0.631
TCM_015486 Theobroma cacao TCM_015486 I 0.631
Aquca_013_00021 Aquilegia coerulea Aquca_013_00021 I 0.630
TCM_015645 Theobroma cacao TCM_015645 I 0.628
POPTR_0007s01370 Populus trichocarpa POPTR_0007s01370 I 0.622
GLYMA12G18720 Glycine max GLYMA12G18720 I 0.619
Gorai.012G055400 Gossypium raimondii Gorai.012G055400 I 0.613
Ciclev10009522m.g Citrus clementina Ciclev10009522m.g I 0.612
orange1.1g035661m.g Citrus sinensis orange1.1g035661m.g I 0.612
GLYMA07G05800 Glycine max GLYMA07G05800 I 0.610
AMTR_s00040p00235500 Amborella trichopoda AMTR_s00040p00235500 I 0.606
GLYMA16G02390 Glycine max GLYMA16G02390 I 0.606
Gorai.008G258900 Gossypium raimondii Gorai.008G258900 I 0.606
Thhalv10001600m.g Eutrema salsugineum Thhalv10001600m.g I 0.606
PGSC0003DMG400005472 Solanum tuberosum PGSC0003DMG400005472 I 0.603
Solyc06g053220.2 Solanum lycopersicum Solyc06g053220.2 I 0.603
Ca_20151 Cicer arietinum Ca_20151 I 0.600
BRADI3G50220 Brachypodium distachyon BRADI3G50220 I 0.599