Thhalv10006221m.g (Eutrema salsugineum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Thhalv10006221m.g T229545_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-12
M00865_2.00 		Arabidopsis thaliana
NNNNNNNN
NNNNNNNN		 PBM
Franco-Zorrilla et al.(2014)
ATHB12 		0.840 0.930
ATHB-12
M02045_2.00 		Arabidopsis thaliana
BHWWWWWWDV
BHWWWWWWDV		 PBM
Weirauch et al.(2014)
pTH7207 		0.840 0.930
ATHB-7
M02043_2.00 		Arabidopsis thaliana
NHWTGATTGN
NCAATCAWDN		 PBM
Weirauch et al.(2014)
pTH8090 		0.693 0.895
ATHB-7
M06911_2.00 		Arabidopsis thaliana
NHYCAATCATTSW
WSAATGATTGRDN		 Dap-seq
OMalley et al.(2016)
ATHB7_col_a 		0.693 0.895
Q39944_HELAN
M10802_2.00 		Helianthus annuus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HAHB4_01 		0.657 0.614
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.601 0.614
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.601 0.614
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10006221m Homeodomain 28 84

Links

Other Homeodomain family TFs
Other Eutrema salsugineum TFs

107 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ATHB-12 Arabidopsis thaliana AT3G61890 D 0.840
Bo8g097390 Brassica oleracea Bo8g097390 I 0.840
Bra007637 Brassica rapa Bra007637 I 0.840
ATHB-12 Arabidopsis lyrata fgenesh2_kg.5__2686__AT3G61890.1 I 0.840
Bostr.13158s0194 Boechera stricta Bostr.13158s0194 I 0.807
Cagra.0483s0055 Capsella grandiflora Cagra.0483s0055 I 0.807
Carubv10017952m.g Capsella rubella Carubv10017952m.g I 0.807
gene18656-v1.0-hybrid Fragaria vesca gene18656-v1.0-hybrid I 0.740
PRUPE_ppa010647mg Prunus persica PRUPE_ppa010647mg I 0.739
Pm018314 Prunus mume Pm018314 I 0.739
Bo4g100070 Brassica oleracea Bo4g100070 I 0.718
MTR_8g026960 Medicago truncatula MTR_8g026960 I 0.710
Ca_17608 Cicer arietinum Ca_17608 I 0.710
PK03912.1 Cannabis sativa PK03912.1 I 0.708
MDP0000316497 Malus domestica MDP0000316497 I 0.707
GRMZM2G041462 Zea mays GRMZM2G041462 I 0.706
Sb02g030660 Sorghum bicolor Sb02g030660 I 0.706
Si030983m.g Setaria italica Si030983m.g I 0.706
Pavir.Ba01249 Panicum virgatum Pavir.Ba01249 I 0.706
Pavir.Bb02633 Panicum virgatum Pavir.Bb02633 I 0.706
Bra014417 Brassica rapa Bra014417 I 0.703
Eucgr.A01421 Eucalyptus grandis Eucgr.A01421 I 0.702
BRADI4G35910 Brachypodium distachyon BRADI4G35910 I 0.701
ATHB-7 Arabidopsis thaliana AT2G46680 D 0.693
scaffold_403638.1 Arabidopsis lyrata scaffold_403638.1 I 0.693
scaffold_403640.1 Arabidopsis lyrata scaffold_403640.1 I 0.693
Bostr.25993s0098 Boechera stricta Bostr.25993s0098 I 0.693
Thhalv10001600m.g Eutrema salsugineum Thhalv10001600m.g I 0.693
Bo4g007060 Brassica oleracea Bo4g007060 I 0.686
Bra004516 Brassica rapa Bra004516 I 0.686
MDP0000311522 Malus domestica MDP0000311522 I 0.674
PRUPE_ppa011221mg Prunus persica PRUPE_ppa011221mg I 0.660
Pm019693 Prunus mume Pm019693 I 0.660
Cagra.0050s0032 Capsella grandiflora Cagra.0050s0032 I 0.660
Carubv10023896m.g Capsella rubella Carubv10023896m.g I 0.660
VIT_16s0098g01170 Vitis vinifera VIT_16s0098g01170 I 0.658
PGSC0003DMG400018509 Solanum tuberosum PGSC0003DMG400018509 I 0.657
Solyc03g082550.2 Solanum lycopersicum Solyc03g082550.2 I 0.657
Q39944_HELAN Helianthus annuus Q39944_HELAN D 0.657
GRMZM2G034113 Zea mays GRMZM2G034113 I 0.653
GLYMA06G35050 Glycine max GLYMA06G35050 I 0.643
Aquca_009_01021 Aquilegia coerulea Aquca_009_01021 I 0.636
AMTR_s00027p00144540 Amborella trichopoda AMTR_s00027p00144540 I 0.630
Gorai.002G244000 Gossypium raimondii Gorai.002G244000 I 0.624
GLYMA12G18720 Glycine max GLYMA12G18720 I 0.623
PGSC0003DMG400031777 Solanum tuberosum PGSC0003DMG400031777 I 0.623
Solyc02g077590.1 Solanum lycopersicum Solyc02g077590.1 I 0.623
POPTR_0001s40540 Populus trichocarpa POPTR_0001s40540 I 0.619
SapurV1A.0207s0080 Salix purpurea SapurV1A.0207s0080 I 0.619
Ciclev10012525m.g Citrus clementina Ciclev10012525m.g I 0.615
orange1.1g040769m.g Citrus sinensis orange1.1g040769m.g I 0.615
POPTR_0011s11510 Populus trichocarpa POPTR_0011s11510 I 0.614
MTR_1g061660 Medicago truncatula MTR_1g061660 I 0.609
GLYMA16G02390 Glycine max GLYMA16G02390 I 0.608
VIT_18s0001g06430 Vitis vinifera VIT_18s0001g06430 I 0.608
GSMUA_Achr6G10660_001 Musa acuminata GSMUA_Achr6G10660_001 I 0.606
Cla021437 Citrullus lanatus Cla021437 I 0.606
Cucsa.259560 Cucumis sativus Cucsa.259560 I 0.606
PGSC0003DMG400005472 Solanum tuberosum PGSC0003DMG400005472 I 0.605
Solyc06g053220.2 Solanum lycopersicum Solyc06g053220.2 I 0.605
PK15571.1 Cannabis sativa PK15571.1 I 0.604
GLYMA07G05800 Glycine max GLYMA07G05800 I 0.603
evm.TU.supercontig_80.1 Carica papaya evm.TU.supercontig_80.1 I 0.603
Gorai.001G152200 Gossypium raimondii Gorai.001G152200 I 0.603
GLYMA19G02490 Glycine max GLYMA19G02490 I 0.601
MTR_6g011610 Medicago truncatula MTR_6g011610 I 0.601
POPTR_0017s11800 Populus trichocarpa POPTR_0017s11800 I 0.601
PRUPE_ppa020465mg Prunus persica PRUPE_ppa020465mg I 0.601
TCM_018470 Theobroma cacao TCM_018470 I 0.601
Ca_10527 Cicer arietinum Ca_10527 I 0.601
Cla010510 Citrullus lanatus Cla010510 I 0.601
Pm015861 Prunus mume Pm015861 I 0.601
29822.m003500 Ricinus communis 29822.m003500 I 0.601
cassava13234.valid.m1 Manihot esculenta cassava13234.valid.m1 I 0.601
cassava39955.m1 Manihot esculenta cassava39955.m1 I 0.601
Cucsa.158420 Cucumis sativus Cucsa.158420 I 0.601
Ciclev10012352m.g Citrus clementina Ciclev10012352m.g I 0.601
Eucgr.I01934 Eucalyptus grandis Eucgr.I01934 I 0.601
Eucgr.I02255 Eucalyptus grandis Eucgr.I02255 I 0.601
evm.TU.supercontig_14.18 Carica papaya evm.TU.supercontig_14.18 I 0.601
gene28322-v1.0-hybrid Fragaria vesca gene28322-v1.0-hybrid I 0.601
Gorai.001G256300 Gossypium raimondii Gorai.001G256300 I 0.601
Gorai.006G022100 Gossypium raimondii Gorai.006G022100 I 0.601
MDP0000124827 Malus domestica MDP0000124827 I 0.601
MDP0000737128 Malus domestica MDP0000737128 I 0.601
orange1.1g041877m.g Citrus sinensis orange1.1g041877m.g I 0.601
SapurV1A.1260s0050 Salix purpurea SapurV1A.1260s0050 I 0.601
SapurV1A.2065s0030 Salix purpurea SapurV1A.2065s0030 I 0.601
PK20392.1 Cannabis sativa PK20392.1 D 0.601
chr2.LjT39I02.10.nc Lotus japonicus chr2.LjT39I02.10.nc I 0.601
HAT7 Arabidopsis thaliana AT5G15150 I 0.600
Bo2g012410 Brassica oleracea Bo2g012410 I 0.600
Bo3g010120 Brassica oleracea Bo3g010120 I 0.600
Bo9g165360 Brassica oleracea Bo9g165360 I 0.600
Bra006285 Brassica rapa Bra006285 I 0.600
Bra008717 Brassica rapa Bra008717 I 0.600
Bra023506 Brassica rapa Bra023506 I 0.600
ATHB-3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001192 I 0.600
GLYMA09G37410 Glycine max GLYMA09G37410 I 0.600
GLYMA18G49290 Glycine max GLYMA18G49290 I 0.600
GSMUA_Achr10G18860_001 Musa acuminata GSMUA_Achr10G18860_001 I 0.600
GSMUA_Achr4G00550_001 Musa acuminata GSMUA_Achr4G00550_001 I 0.600
Bostr.2902s0249 Boechera stricta Bostr.2902s0249 I 0.600
Cagra.1036s0042 Capsella grandiflora Cagra.1036s0042 I 0.600
Carubv10001498m.g Capsella rubella Carubv10001498m.g I 0.600
Thhalv10014157m.g Eutrema salsugineum Thhalv10014157m.g I 0.600
GSMUA_Achr6G36450_001 Musa acuminata GSMUA_Achr6G36450_001 I 0.599