Bo4g100070 (Brassica oleracea)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Bo4g100070 T204919_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-12
M00865_2.00 		Arabidopsis thaliana
NNNNNNNN
NNNNNNNN		 PBM
Franco-Zorrilla et al.(2014)
ATHB12 		0.691 0.893
ATHB-12
M02045_2.00 		Arabidopsis thaliana
BHWWWWWWDV
BHWWWWWWDV		 PBM
Weirauch et al.(2014)
pTH7207 		0.691 0.893
Q39944_HELAN
M10802_2.00 		Helianthus annuus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HAHB4_01 		0.657 0.625
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.633 0.643
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.633 0.643
ATHB-51
M00867_2.00 		Arabidopsis thaliana
ATWATKNN
NNMATWAT		 PBM
Franco-Zorrilla et al.(2014)
ATHB51 		0.613 0.536
ATHB-51
M06927_2.00 		Arabidopsis thaliana
DNCAATAATTGAD
HTCAATTATTGNH		 Dap-seq
OMalley et al.(2016)
LMI1_col_a 		0.613 0.536
ATHB-51
M06928_2.00 		Arabidopsis thaliana
NDNCAATAATTGA
TCAATTATTGNHN		 Dap-seq
OMalley et al.(2016)
LMI1_colamp_a 		0.613 0.536
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.612 0.589
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.612 0.589
ATHB-22
M02041_2.00 		Arabidopsis thaliana
NNATAATWWWNNN
NNNWWWATTATNN		 PBM
Weirauch et al.(2014)
pTH5883 		0.611 0.518
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo4g100070.1 Homeodomain 28 83

Links

Other Homeodomain family TFs
Other Brassica oleracea TFs

121 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra014417 Brassica rapa Bra014417 I 0.852
BRADI4G35910 Brachypodium distachyon BRADI4G35910 I 0.733
Thhalv10006221m.g Eutrema salsugineum Thhalv10006221m.g I 0.718
MTR_8g026960 Medicago truncatula MTR_8g026960 I 0.710
Ca_17608 Cicer arietinum Ca_17608 I 0.710
PRUPE_ppa010647mg Prunus persica PRUPE_ppa010647mg I 0.708
Pm018314 Prunus mume Pm018314 I 0.708
gene18656-v1.0-hybrid Fragaria vesca gene18656-v1.0-hybrid I 0.708
MDP0000316497 Malus domestica MDP0000316497 I 0.707
GRMZM2G041462 Zea mays GRMZM2G041462 I 0.706
Sb02g030660 Sorghum bicolor Sb02g030660 I 0.706
Si030983m.g Setaria italica Si030983m.g I 0.706
Pavir.Ba01249 Panicum virgatum Pavir.Ba01249 I 0.706
Pavir.Bb02633 Panicum virgatum Pavir.Bb02633 I 0.706
ATHB-12 Arabidopsis thaliana AT3G61890 D 0.691
Bo8g097390 Brassica oleracea Bo8g097390 I 0.691
Bra007637 Brassica rapa Bra007637 I 0.691
ATHB-12 Arabidopsis lyrata fgenesh2_kg.5__2686__AT3G61890.1 I 0.691
Bostr.13158s0194 Boechera stricta Bostr.13158s0194 I 0.691
Cagra.0483s0055 Capsella grandiflora Cagra.0483s0055 I 0.691
Carubv10017952m.g Capsella rubella Carubv10017952m.g I 0.691
PGSC0003DMG400018509 Solanum tuberosum PGSC0003DMG400018509 I 0.689
Solyc03g082550.2 Solanum lycopersicum Solyc03g082550.2 I 0.689
MDP0000311522 Malus domestica MDP0000311522 I 0.674
Eucgr.A01421 Eucalyptus grandis Eucgr.A01421 I 0.669
Q39944_HELAN Helianthus annuus Q39944_HELAN D 0.657
GRMZM2G034113 Zea mays GRMZM2G034113 I 0.653
Bo3g002560 Brassica oleracea Bo3g002560 I 0.646
VIT_18s0001g06430 Vitis vinifera VIT_18s0001g06430 I 0.640
GSMUA_Achr6G10660_001 Musa acuminata GSMUA_Achr6G10660_001 I 0.637
PGSC0003DMG400005472 Solanum tuberosum PGSC0003DMG400005472 I 0.637
Solyc06g053220.2 Solanum lycopersicum Solyc06g053220.2 I 0.637
Aquca_009_01021 Aquilegia coerulea Aquca_009_01021 I 0.636
Bo2g005230 Brassica oleracea Bo2g005230 I 0.634
Bra028820 Brassica rapa Bra028820 I 0.634
evm.TU.supercontig_80.1 Carica papaya evm.TU.supercontig_80.1 I 0.634
GLYMA19G02490 Glycine max GLYMA19G02490 I 0.633
MTR_6g011610 Medicago truncatula MTR_6g011610 I 0.633
POPTR_0017s11800 Populus trichocarpa POPTR_0017s11800 I 0.633
PRUPE_ppa020465mg Prunus persica PRUPE_ppa020465mg I 0.633
TCM_018470 Theobroma cacao TCM_018470 I 0.633
Ca_10527 Cicer arietinum Ca_10527 I 0.633
Cla010510 Citrullus lanatus Cla010510 I 0.633
Pm015861 Prunus mume Pm015861 I 0.633
29822.m003500 Ricinus communis 29822.m003500 I 0.633
cassava13234.valid.m1 Manihot esculenta cassava13234.valid.m1 I 0.633
cassava39955.m1 Manihot esculenta cassava39955.m1 I 0.633
Cucsa.158420 Cucumis sativus Cucsa.158420 I 0.633
Ciclev10012352m.g Citrus clementina Ciclev10012352m.g I 0.633
Eucgr.I01934 Eucalyptus grandis Eucgr.I01934 I 0.633
Eucgr.I02255 Eucalyptus grandis Eucgr.I02255 I 0.633
evm.TU.supercontig_14.18 Carica papaya evm.TU.supercontig_14.18 I 0.633
gene28322-v1.0-hybrid Fragaria vesca gene28322-v1.0-hybrid I 0.633
Gorai.001G256300 Gossypium raimondii Gorai.001G256300 I 0.633
Gorai.006G022100 Gossypium raimondii Gorai.006G022100 I 0.633
MDP0000124827 Malus domestica MDP0000124827 I 0.633
MDP0000737128 Malus domestica MDP0000737128 I 0.633
orange1.1g041877m.g Citrus sinensis orange1.1g041877m.g I 0.633
SapurV1A.1260s0050 Salix purpurea SapurV1A.1260s0050 I 0.633
SapurV1A.2065s0030 Salix purpurea SapurV1A.2065s0030 I 0.633
PK20392.1 Cannabis sativa PK20392.1 D 0.633
chr2.LjT39I02.10.nc Lotus japonicus chr2.LjT39I02.10.nc I 0.633
GLYMA09G37410 Glycine max GLYMA09G37410 I 0.632
GLYMA18G49290 Glycine max GLYMA18G49290 I 0.632
HAT7 Arabidopsis thaliana AT5G15150 I 0.631
Bo2g012410 Brassica oleracea Bo2g012410 I 0.631
Bo3g010120 Brassica oleracea Bo3g010120 I 0.631
Bo9g165360 Brassica oleracea Bo9g165360 I 0.631
Bra006285 Brassica rapa Bra006285 I 0.631
Bra008717 Brassica rapa Bra008717 I 0.631
Bra023506 Brassica rapa Bra023506 I 0.631
ATHB-3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001192 I 0.631
GSMUA_Achr10G18860_001 Musa acuminata GSMUA_Achr10G18860_001 I 0.631
GSMUA_Achr4G00550_001 Musa acuminata GSMUA_Achr4G00550_001 I 0.631
Bostr.2902s0249 Boechera stricta Bostr.2902s0249 I 0.631
Cagra.1036s0042 Capsella grandiflora Cagra.1036s0042 I 0.631
Carubv10001498m.g Capsella rubella Carubv10001498m.g I 0.631
Thhalv10014157m.g Eutrema salsugineum Thhalv10014157m.g I 0.631
AMTR_s00027p00144540 Amborella trichopoda AMTR_s00027p00144540 I 0.630
GSMUA_Achr6G36450_001 Musa acuminata GSMUA_Achr6G36450_001 I 0.630
VIT_16s0098g01170 Vitis vinifera VIT_16s0098g01170 I 0.626
PGSC0003DMG400002692 Solanum tuberosum PGSC0003DMG400002692 I 0.624
Solyc09g008810.2 Solanum lycopersicum Solyc09g008810.2 I 0.624
mgf022748m Mimulus guttatus mgf022748m I 0.624
PGSC0003DMG400031777 Solanum tuberosum PGSC0003DMG400031777 I 0.623
Solyc02g077590.1 Solanum lycopersicum Solyc02g077590.1 I 0.623
Cla018017 Citrullus lanatus Cla018017 I 0.623
Cucsa.378700 Cucumis sativus Cucsa.378700 I 0.623
mgf019824m Mimulus guttatus mgf019824m I 0.623
GLYMA12G18720 Glycine max GLYMA12G18720 I 0.622
Carubv10002831m.g Capsella rubella Carubv10002831m.g I 0.621
Cagra.0154s0024 Capsella grandiflora Cagra.0154s0024 I 0.619
Al_scaffold_0006_290 Arabidopsis lyrata Al_scaffold_0006_290 I 0.615
Ciclev10012525m.g Citrus clementina Ciclev10012525m.g I 0.615
orange1.1g040769m.g Citrus sinensis orange1.1g040769m.g I 0.615
ATHB-51 Arabidopsis thaliana AT5G03790 D 0.613
Bo9g181720 Brassica oleracea Bo9g181720 I 0.613
Bra009510 Brassica rapa Bra009510 I 0.613
ATHB51 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000249 I 0.613
Bostr.2128s0069 Boechera stricta Bostr.2128s0069 I 0.613
Bostr.2128s0071 Boechera stricta Bostr.2128s0071 I 0.613
Cagra.0154s0025 Capsella grandiflora Cagra.0154s0025 I 0.613
Carubv10002440m.g Capsella rubella Carubv10002440m.g I 0.613
Thhalv10014547m.g Eutrema salsugineum Thhalv10014547m.g I 0.613
ATHB-20 Arabidopsis thaliana AT3G01220 D 0.612
Bo1g158730 Brassica oleracea Bo1g158730 I 0.612
Bo4g034490 Brassica oleracea Bo4g034490 I 0.612
Bra005259 Brassica rapa Bra005259 I 0.612
Bra039135 Brassica rapa Bra039135 I 0.612
ATHB20 Arabidopsis lyrata scaffold_300109.1 I 0.612
Bostr.1460s0094 Boechera stricta Bostr.1460s0094 I 0.612
Cagra.1390s0021 Capsella grandiflora Cagra.1390s0021 I 0.612
Carubv10014214m.g Capsella rubella Carubv10014214m.g I 0.612
MDP0000615948 Malus domestica MDP0000615948 I 0.612
Thhalv10021334m.g Eutrema salsugineum Thhalv10021334m.g I 0.612
ATHB-22 Arabidopsis thaliana AT2G36610 D 0.611
GLYMA06G35050 Glycine max GLYMA06G35050 I 0.611
MTR_1g061660 Medicago truncatula MTR_1g061660 I 0.609
GLYMA16G02390 Glycine max GLYMA16G02390 I 0.607
Eucgr.D02645 Eucalyptus grandis Eucgr.D02645 I 0.601
GLYMA13G05270 Glycine max GLYMA13G05270 I 0.599