Al_scaffold_0006_290 (Arabidopsis lyrata)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Al_scaffold_0006_290 T204359_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-51
M00867_2.00 		Arabidopsis thaliana
ATWATKNN
NNMATWAT		 PBM
Franco-Zorrilla et al.(2014)
ATHB51 		0.721 0.750
ATHB-51
M06927_2.00 		Arabidopsis thaliana
DNCAATAATTGAD
HTCAATTATTGNH		 Dap-seq
OMalley et al.(2016)
LMI1_col_a 		0.721 0.750
ATHB-51
M06928_2.00 		Arabidopsis thaliana
NDNCAATAATTGA
TCAATTATTGNHN		 Dap-seq
OMalley et al.(2016)
LMI1_colamp_a 		0.721 0.750
ATHB-22
M02041_2.00 		Arabidopsis thaliana
NNATAATWWWNNN
NNNWWWATTATNN		 PBM
Weirauch et al.(2014)
pTH5883 		0.692 0.643
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.628 0.625
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.628 0.625
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.607 0.589
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.607 0.589
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Al_scaffold_0006_290 Homeodomain 78 133

Links

Other Homeodomain family TFs
Other Arabidopsis lyrata TFs

142 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.2128s0069 Boechera stricta Bostr.2128s0069 I 0.865
Carubv10002831m.g Capsella rubella Carubv10002831m.g I 0.818
Cagra.0154s0024 Capsella grandiflora Cagra.0154s0024 I 0.816
Carubv10003464m.g Capsella rubella Carubv10003464m.g I 0.744
Cagra.0463s0004 Capsella grandiflora Cagra.0463s0004 I 0.734
ATHB-51 Arabidopsis thaliana AT5G03790 D 0.721
Bo9g181720 Brassica oleracea Bo9g181720 I 0.721
Bra009510 Brassica rapa Bra009510 I 0.721
ATHB51 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000249 I 0.721
Bostr.2128s0071 Boechera stricta Bostr.2128s0071 I 0.721
Cagra.0154s0025 Capsella grandiflora Cagra.0154s0025 I 0.721
Carubv10002440m.g Capsella rubella Carubv10002440m.g I 0.721
Thhalv10014547m.g Eutrema salsugineum Thhalv10014547m.g I 0.721
Thhalv10015784m.g Eutrema salsugineum Thhalv10015784m.g I 0.720
Bo3g002560 Brassica oleracea Bo3g002560 I 0.717
PGSC0003DMG400002692 Solanum tuberosum PGSC0003DMG400002692 I 0.711
Solyc09g008810.2 Solanum lycopersicum Solyc09g008810.2 I 0.711
Cla018017 Citrullus lanatus Cla018017 I 0.710
Cucsa.378700 Cucumis sativus Cucsa.378700 I 0.710
mgf022748m Mimulus guttatus mgf022748m I 0.707
Bo2g005230 Brassica oleracea Bo2g005230 I 0.705
Bra028820 Brassica rapa Bra028820 I 0.705
MDP0000316497 Malus domestica MDP0000316497 I 0.700
mgf019824m Mimulus guttatus mgf019824m I 0.698
Bostr.23794s0432 Boechera stricta Bostr.23794s0432 I 0.698
Cagra.0228s0052 Capsella grandiflora Cagra.0228s0052 I 0.698
Carubv10024148m.g Capsella rubella Carubv10024148m.g I 0.698
ATHB-22 Arabidopsis thaliana AT2G36610 D 0.692
ATHB22 Arabidopsis lyrata Al_scaffold_0004_2163 I 0.683
evm.TU.supercontig_83.103 Carica papaya evm.TU.supercontig_83.103 N 0.680
POPTR_0006s11890 Populus trichocarpa POPTR_0006s11890 I 0.678
29815.m000499 Ricinus communis 29815.m000499 I 0.678
cassava14646.m1 Manihot esculenta cassava14646.m1 I 0.678
Gorai.002G244000 Gossypium raimondii Gorai.002G244000 I 0.678
Gorai.002G244200 Gossypium raimondii Gorai.002G244200 I 0.678
MDP0000119544 Malus domestica MDP0000119544 I 0.677
MDP0000134241 Malus domestica MDP0000134241 I 0.677
MDP0000738604 Malus domestica MDP0000738604 I 0.677
VIT_08s0007g04200 Vitis vinifera VIT_08s0007g04200 I 0.676
Thhalv10017567m.g Eutrema salsugineum Thhalv10017567m.g I 0.676
GLYMA10G07440 Glycine max GLYMA10G07440 I 0.674
GLYMA13G21330 Glycine max GLYMA13G21330 I 0.674
PRUPE_ppa015952mg Prunus persica PRUPE_ppa015952mg I 0.674
TCM_022391 Theobroma cacao TCM_022391 I 0.674
Cla018641 Citrullus lanatus Cla018641 I 0.674
Pm026270 Prunus mume Pm026270 I 0.674
cassava34082.m1 Manihot esculenta cassava34082.m1 I 0.674
Cucsa.125070 Cucumis sativus Cucsa.125070 I 0.674
evm.TU.supercontig_5.106 Carica papaya evm.TU.supercontig_5.106 I 0.674
Gorai.009G409600 Gossypium raimondii Gorai.009G409600 I 0.674
Lus10008641.g Linum usitatissimum Lus10008641.g I 0.674
Lus10035583.g Linum usitatissimum Lus10035583.g I 0.674
Ciclev10012525m.g Citrus clementina Ciclev10012525m.g I 0.671
orange1.1g040769m.g Citrus sinensis orange1.1g040769m.g I 0.671
SapurV1A.0226s0110 Salix purpurea SapurV1A.0226s0110 I 0.670
LjSGA_022706.2 Lotus japonicus LjSGA_022706.2 I 0.670
gene30097-v1.0-hybrid Fragaria vesca gene30097-v1.0-hybrid I 0.662
PK15535.1 Cannabis sativa PK15535.1 I 0.662
Bo4g034490 Brassica oleracea Bo4g034490 I 0.661
Bra005259 Brassica rapa Bra005259 I 0.661
GLYMA12G18720 Glycine max GLYMA12G18720 I 0.660
Eucgr.A01575 Eucalyptus grandis Eucgr.A01575 I 0.646
Aquca_009_01021 Aquilegia coerulea Aquca_009_01021 I 0.643
Solyc03g034120.2 Solanum lycopersicum Solyc03g034120.2 I 0.635
VIT_18s0001g06430 Vitis vinifera VIT_18s0001g06430 I 0.635
HAT7 Arabidopsis thaliana AT5G15150 I 0.628
Bo2g012410 Brassica oleracea Bo2g012410 I 0.628
Bo3g010120 Brassica oleracea Bo3g010120 I 0.628
Bo9g165360 Brassica oleracea Bo9g165360 I 0.628
Bra006285 Brassica rapa Bra006285 I 0.628
Bra008717 Brassica rapa Bra008717 I 0.628
Bra023506 Brassica rapa Bra023506 I 0.628
ATHB-3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001192 I 0.628
GLYMA09G37410 Glycine max GLYMA09G37410 I 0.628
GLYMA18G49290 Glycine max GLYMA18G49290 I 0.628
GLYMA19G02490 Glycine max GLYMA19G02490 I 0.628
GSMUA_Achr10G18860_001 Musa acuminata GSMUA_Achr10G18860_001 I 0.628
GSMUA_Achr4G00550_001 Musa acuminata GSMUA_Achr4G00550_001 I 0.628
GSMUA_Achr6G36450_001 Musa acuminata GSMUA_Achr6G36450_001 I 0.628
MTR_6g011610 Medicago truncatula MTR_6g011610 I 0.628
POPTR_0017s11800 Populus trichocarpa POPTR_0017s11800 I 0.628
PRUPE_ppa020465mg Prunus persica PRUPE_ppa020465mg I 0.628
TCM_018470 Theobroma cacao TCM_018470 I 0.628
Ca_10527 Cicer arietinum Ca_10527 I 0.628
Cla010510 Citrullus lanatus Cla010510 I 0.628
Pm015861 Prunus mume Pm015861 I 0.628
29822.m003500 Ricinus communis 29822.m003500 I 0.628
cassava13234.valid.m1 Manihot esculenta cassava13234.valid.m1 I 0.628
cassava39955.m1 Manihot esculenta cassava39955.m1 I 0.628
Cucsa.158420 Cucumis sativus Cucsa.158420 I 0.628
Bostr.2902s0249 Boechera stricta Bostr.2902s0249 I 0.628
Cagra.1036s0042 Capsella grandiflora Cagra.1036s0042 I 0.628
Carubv10001498m.g Capsella rubella Carubv10001498m.g I 0.628
Ciclev10012352m.g Citrus clementina Ciclev10012352m.g I 0.628
evm.TU.supercontig_14.18 Carica papaya evm.TU.supercontig_14.18 I 0.628
gene28322-v1.0-hybrid Fragaria vesca gene28322-v1.0-hybrid I 0.628
Gorai.001G256300 Gossypium raimondii Gorai.001G256300 I 0.628
Gorai.006G022100 Gossypium raimondii Gorai.006G022100 I 0.628
MDP0000124827 Malus domestica MDP0000124827 I 0.628
MDP0000737128 Malus domestica MDP0000737128 I 0.628
orange1.1g041877m.g Citrus sinensis orange1.1g041877m.g I 0.628
SapurV1A.1260s0050 Salix purpurea SapurV1A.1260s0050 I 0.628
SapurV1A.2065s0030 Salix purpurea SapurV1A.2065s0030 I 0.628
Thhalv10014157m.g Eutrema salsugineum Thhalv10014157m.g I 0.628
PK20392.1 Cannabis sativa PK20392.1 D 0.628
chr2.LjT39I02.10.nc Lotus japonicus chr2.LjT39I02.10.nc I 0.628
GRMZM2G034113 Zea mays GRMZM2G034113 I 0.622
GRMZM2G041462 Zea mays GRMZM2G041462 I 0.622
Sb02g030660 Sorghum bicolor Sb02g030660 I 0.622
Si030983m.g Setaria italica Si030983m.g I 0.622
Pavir.Ba01249 Panicum virgatum Pavir.Ba01249 I 0.622
Pavir.Bb02633 Panicum virgatum Pavir.Bb02633 I 0.622
BRADI4G35910 Brachypodium distachyon BRADI4G35910 I 0.621
GSMUA_Achr6G10660_001 Musa acuminata GSMUA_Achr6G10660_001 I 0.621
PGSC0003DMG400018509 Solanum tuberosum PGSC0003DMG400018509 I 0.621
Solyc03g082550.2 Solanum lycopersicum Solyc03g082550.2 I 0.621
Solyc06g053220.2 Solanum lycopersicum Solyc06g053220.2 I 0.619
Eucgr.I01934 Eucalyptus grandis Eucgr.I01934 I 0.619
MTR_8g026960 Medicago truncatula MTR_8g026960 I 0.616
PRUPE_ppa010647mg Prunus persica PRUPE_ppa010647mg I 0.616
Ca_17608 Cicer arietinum Ca_17608 I 0.616
Pm018314 Prunus mume Pm018314 I 0.616
Bo4g100070 Brassica oleracea Bo4g100070 I 0.615
MTR_1g061660 Medicago truncatula MTR_1g061660 I 0.615
PGSC0003DMG400005472 Solanum tuberosum PGSC0003DMG400005472 I 0.613
PGSC0003DMG400017775 Solanum tuberosum PGSC0003DMG400017775 I 0.613
PGSC0003DMG400017776 Solanum tuberosum PGSC0003DMG400017776 I 0.613
PGSC0003DMG400017787 Solanum tuberosum PGSC0003DMG400017787 I 0.613
Solyc03g034110.2 Solanum lycopersicum Solyc03g034110.2 I 0.613
Eucgr.I02255 Eucalyptus grandis Eucgr.I02255 I 0.609
ATHB-20 Arabidopsis thaliana AT3G01220 D 0.607
Bo1g158730 Brassica oleracea Bo1g158730 I 0.607
Bra039135 Brassica rapa Bra039135 I 0.607
ATHB20 Arabidopsis lyrata scaffold_300109.1 I 0.607
Solyc03g034130.2 Solanum lycopersicum Solyc03g034130.2 I 0.607
Bostr.1460s0094 Boechera stricta Bostr.1460s0094 I 0.607
Cagra.1390s0021 Capsella grandiflora Cagra.1390s0021 I 0.607
Carubv10014214m.g Capsella rubella Carubv10014214m.g I 0.607
Thhalv10021334m.g Eutrema salsugineum Thhalv10021334m.g I 0.607
29983.m003123 Ricinus communis 29983.m003123 I 0.604
Bo12274s010 Brassica oleracea Bo12274s010 I 0.602
Bra014417 Brassica rapa Bra014417 I 0.600