Bostr.2128s0069 (Boechera stricta)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Bostr.2128s0069 T228111_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-51
M00867_2.00 		Arabidopsis thaliana
ATWATKNN
NNMATWAT		 PBM
Franco-Zorrilla et al.(2014)
ATHB51 		0.719 0.714
ATHB-51
M06927_2.00 		Arabidopsis thaliana
DNCAATAATTGAD
HTCAATTATTGNH		 Dap-seq
OMalley et al.(2016)
LMI1_col_a 		0.719 0.714
ATHB-51
M06928_2.00 		Arabidopsis thaliana
NDNCAATAATTGA
TCAATTATTGNHN		 Dap-seq
OMalley et al.(2016)
LMI1_colamp_a 		0.719 0.714
ATHB-22
M02041_2.00 		Arabidopsis thaliana
NNATAATWWWNNN
NNNWWWATTATNN		 PBM
Weirauch et al.(2014)
pTH5883 		0.691 0.607
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.626 0.589
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.626 0.589
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.605 0.554
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.605 0.554
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.2128s0069.1.p Homeodomain 78 133

Links

Other Homeodomain family TFs
Other Boechera stricta TFs

141 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Al_scaffold_0006_290 Arabidopsis lyrata Al_scaffold_0006_290 I 0.865
Carubv10002831m.g Capsella rubella Carubv10002831m.g I 0.816
Cagra.0154s0024 Capsella grandiflora Cagra.0154s0024 I 0.815
Carubv10003464m.g Capsella rubella Carubv10003464m.g I 0.742
Cagra.0463s0004 Capsella grandiflora Cagra.0463s0004 I 0.732
ATHB-51 Arabidopsis thaliana AT5G03790 D 0.719
Bo9g181720 Brassica oleracea Bo9g181720 I 0.719
Bra009510 Brassica rapa Bra009510 I 0.719
ATHB51 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000249 I 0.719
Bostr.2128s0071 Boechera stricta Bostr.2128s0071 I 0.719
Cagra.0154s0025 Capsella grandiflora Cagra.0154s0025 I 0.719
Carubv10002440m.g Capsella rubella Carubv10002440m.g I 0.719
Thhalv10014547m.g Eutrema salsugineum Thhalv10014547m.g I 0.719
Thhalv10015784m.g Eutrema salsugineum Thhalv10015784m.g I 0.718
Bo3g002560 Brassica oleracea Bo3g002560 I 0.715
PGSC0003DMG400002692 Solanum tuberosum PGSC0003DMG400002692 I 0.709
Solyc09g008810.2 Solanum lycopersicum Solyc09g008810.2 I 0.709
Cla018017 Citrullus lanatus Cla018017 I 0.708
Cucsa.378700 Cucumis sativus Cucsa.378700 I 0.708
mgf022748m Mimulus guttatus mgf022748m I 0.705
Bo2g005230 Brassica oleracea Bo2g005230 I 0.703
Bra028820 Brassica rapa Bra028820 I 0.703
MDP0000316497 Malus domestica MDP0000316497 I 0.698
mgf019824m Mimulus guttatus mgf019824m I 0.696
Bostr.23794s0432 Boechera stricta Bostr.23794s0432 I 0.696
Cagra.0228s0052 Capsella grandiflora Cagra.0228s0052 I 0.696
Carubv10024148m.g Capsella rubella Carubv10024148m.g I 0.696
ATHB-22 Arabidopsis thaliana AT2G36610 D 0.691
ATHB22 Arabidopsis lyrata Al_scaffold_0004_2163 I 0.681
evm.TU.supercontig_83.103 Carica papaya evm.TU.supercontig_83.103 N 0.679
POPTR_0006s11890 Populus trichocarpa POPTR_0006s11890 I 0.676
29815.m000499 Ricinus communis 29815.m000499 I 0.676
cassava14646.m1 Manihot esculenta cassava14646.m1 I 0.676
Gorai.002G244000 Gossypium raimondii Gorai.002G244000 I 0.676
Gorai.002G244200 Gossypium raimondii Gorai.002G244200 I 0.676
MDP0000119544 Malus domestica MDP0000119544 I 0.675
MDP0000134241 Malus domestica MDP0000134241 I 0.675
MDP0000738604 Malus domestica MDP0000738604 I 0.675
Thhalv10017567m.g Eutrema salsugineum Thhalv10017567m.g I 0.675
VIT_08s0007g04200 Vitis vinifera VIT_08s0007g04200 I 0.674
GLYMA10G07440 Glycine max GLYMA10G07440 I 0.672
GLYMA13G21330 Glycine max GLYMA13G21330 I 0.672
PRUPE_ppa015952mg Prunus persica PRUPE_ppa015952mg I 0.672
TCM_022391 Theobroma cacao TCM_022391 I 0.672
Cla018641 Citrullus lanatus Cla018641 I 0.672
Pm026270 Prunus mume Pm026270 I 0.672
cassava34082.m1 Manihot esculenta cassava34082.m1 I 0.672
Cucsa.125070 Cucumis sativus Cucsa.125070 I 0.672
evm.TU.supercontig_5.106 Carica papaya evm.TU.supercontig_5.106 I 0.672
Gorai.009G409600 Gossypium raimondii Gorai.009G409600 I 0.672
Lus10008641.g Linum usitatissimum Lus10008641.g I 0.672
Lus10035583.g Linum usitatissimum Lus10035583.g I 0.672
Ciclev10012525m.g Citrus clementina Ciclev10012525m.g I 0.670
orange1.1g040769m.g Citrus sinensis orange1.1g040769m.g I 0.670
SapurV1A.0226s0110 Salix purpurea SapurV1A.0226s0110 I 0.668
LjSGA_022706.2 Lotus japonicus LjSGA_022706.2 I 0.668
gene30097-v1.0-hybrid Fragaria vesca gene30097-v1.0-hybrid I 0.661
PK15535.1 Cannabis sativa PK15535.1 I 0.661
Bo4g034490 Brassica oleracea Bo4g034490 I 0.659
Bra005259 Brassica rapa Bra005259 I 0.659
GLYMA12G18720 Glycine max GLYMA12G18720 I 0.658
Eucgr.A01575 Eucalyptus grandis Eucgr.A01575 I 0.644
Aquca_009_01021 Aquilegia coerulea Aquca_009_01021 I 0.643
Solyc03g034120.2 Solanum lycopersicum Solyc03g034120.2 I 0.633
VIT_18s0001g06430 Vitis vinifera VIT_18s0001g06430 I 0.633
HAT7 Arabidopsis thaliana AT5G15150 I 0.626
Bo2g012410 Brassica oleracea Bo2g012410 I 0.626
Bo3g010120 Brassica oleracea Bo3g010120 I 0.626
Bo9g165360 Brassica oleracea Bo9g165360 I 0.626
Bra006285 Brassica rapa Bra006285 I 0.626
Bra008717 Brassica rapa Bra008717 I 0.626
Bra023506 Brassica rapa Bra023506 I 0.626
ATHB-3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001192 I 0.626
GLYMA09G37410 Glycine max GLYMA09G37410 I 0.626
GLYMA18G49290 Glycine max GLYMA18G49290 I 0.626
GLYMA19G02490 Glycine max GLYMA19G02490 I 0.626
GSMUA_Achr10G18860_001 Musa acuminata GSMUA_Achr10G18860_001 I 0.626
GSMUA_Achr4G00550_001 Musa acuminata GSMUA_Achr4G00550_001 I 0.626
GSMUA_Achr6G36450_001 Musa acuminata GSMUA_Achr6G36450_001 I 0.626
MTR_6g011610 Medicago truncatula MTR_6g011610 I 0.626
POPTR_0017s11800 Populus trichocarpa POPTR_0017s11800 I 0.626
PRUPE_ppa020465mg Prunus persica PRUPE_ppa020465mg I 0.626
TCM_018470 Theobroma cacao TCM_018470 I 0.626
Ca_10527 Cicer arietinum Ca_10527 I 0.626
Cla010510 Citrullus lanatus Cla010510 I 0.626
Pm015861 Prunus mume Pm015861 I 0.626
29822.m003500 Ricinus communis 29822.m003500 I 0.626
cassava13234.valid.m1 Manihot esculenta cassava13234.valid.m1 I 0.626
cassava39955.m1 Manihot esculenta cassava39955.m1 I 0.626
Cucsa.158420 Cucumis sativus Cucsa.158420 I 0.626
Bostr.2902s0249 Boechera stricta Bostr.2902s0249 I 0.626
Cagra.1036s0042 Capsella grandiflora Cagra.1036s0042 I 0.626
Carubv10001498m.g Capsella rubella Carubv10001498m.g I 0.626
Ciclev10012352m.g Citrus clementina Ciclev10012352m.g I 0.626
evm.TU.supercontig_14.18 Carica papaya evm.TU.supercontig_14.18 I 0.626
gene28322-v1.0-hybrid Fragaria vesca gene28322-v1.0-hybrid I 0.626
Gorai.001G256300 Gossypium raimondii Gorai.001G256300 I 0.626
Gorai.006G022100 Gossypium raimondii Gorai.006G022100 I 0.626
MDP0000124827 Malus domestica MDP0000124827 I 0.626
MDP0000737128 Malus domestica MDP0000737128 I 0.626
orange1.1g041877m.g Citrus sinensis orange1.1g041877m.g I 0.626
SapurV1A.1260s0050 Salix purpurea SapurV1A.1260s0050 I 0.626
SapurV1A.2065s0030 Salix purpurea SapurV1A.2065s0030 I 0.626
Thhalv10014157m.g Eutrema salsugineum Thhalv10014157m.g I 0.626
PK20392.1 Cannabis sativa PK20392.1 D 0.626
chr2.LjT39I02.10.nc Lotus japonicus chr2.LjT39I02.10.nc I 0.626
GRMZM2G034113 Zea mays GRMZM2G034113 I 0.620
GRMZM2G041462 Zea mays GRMZM2G041462 I 0.620
Sb02g030660 Sorghum bicolor Sb02g030660 I 0.620
Si030983m.g Setaria italica Si030983m.g I 0.620
Pavir.Ba01249 Panicum virgatum Pavir.Ba01249 I 0.620
Pavir.Bb02633 Panicum virgatum Pavir.Bb02633 I 0.620
BRADI4G35910 Brachypodium distachyon BRADI4G35910 I 0.619
GSMUA_Achr6G10660_001 Musa acuminata GSMUA_Achr6G10660_001 I 0.619
PGSC0003DMG400018509 Solanum tuberosum PGSC0003DMG400018509 I 0.619
Solyc03g082550.2 Solanum lycopersicum Solyc03g082550.2 I 0.619
Solyc06g053220.2 Solanum lycopersicum Solyc06g053220.2 I 0.618
Eucgr.I01934 Eucalyptus grandis Eucgr.I01934 I 0.618
MTR_1g061660 Medicago truncatula MTR_1g061660 I 0.614
MTR_8g026960 Medicago truncatula MTR_8g026960 I 0.614
PRUPE_ppa010647mg Prunus persica PRUPE_ppa010647mg I 0.614
Ca_17608 Cicer arietinum Ca_17608 I 0.614
Pm018314 Prunus mume Pm018314 I 0.614
Bo4g100070 Brassica oleracea Bo4g100070 I 0.613
PGSC0003DMG400005472 Solanum tuberosum PGSC0003DMG400005472 I 0.611
PGSC0003DMG400017775 Solanum tuberosum PGSC0003DMG400017775 I 0.611
PGSC0003DMG400017776 Solanum tuberosum PGSC0003DMG400017776 I 0.611
PGSC0003DMG400017787 Solanum tuberosum PGSC0003DMG400017787 I 0.611
Solyc03g034110.2 Solanum lycopersicum Solyc03g034110.2 I 0.611
Eucgr.I02255 Eucalyptus grandis Eucgr.I02255 I 0.607
ATHB-20 Arabidopsis thaliana AT3G01220 D 0.605
Bo1g158730 Brassica oleracea Bo1g158730 I 0.605
Bra039135 Brassica rapa Bra039135 I 0.605
ATHB20 Arabidopsis lyrata scaffold_300109.1 I 0.605
Solyc03g034130.2 Solanum lycopersicum Solyc03g034130.2 I 0.605
Bostr.1460s0094 Boechera stricta Bostr.1460s0094 I 0.605
Cagra.1390s0021 Capsella grandiflora Cagra.1390s0021 I 0.605
Carubv10014214m.g Capsella rubella Carubv10014214m.g I 0.605
Thhalv10021334m.g Eutrema salsugineum Thhalv10021334m.g I 0.605
29983.m003123 Ricinus communis 29983.m003123 I 0.602
Bo12274s010 Brassica oleracea Bo12274s010 I 0.600