Cagra.0154s0024 (Capsella grandiflora)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Cagra.0154s0024 T228175_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-51
M00867_2.00 		Arabidopsis thaliana
ATWATKNN
NNMATWAT		 PBM
Franco-Zorrilla et al.(2014)
ATHB51 		0.706 0.714
ATHB-51
M06927_2.00 		Arabidopsis thaliana
DNCAATAATTGAD
HTCAATTATTGNH		 Dap-seq
OMalley et al.(2016)
LMI1_col_a 		0.706 0.714
ATHB-51
M06928_2.00 		Arabidopsis thaliana
NDNCAATAATTGA
TCAATTATTGNHN		 Dap-seq
OMalley et al.(2016)
LMI1_colamp_a 		0.706 0.714
ATHB-22
M02041_2.00 		Arabidopsis thaliana
NNATAATWWWNNN
NNNWWWATTATNN		 PBM
Weirauch et al.(2014)
pTH5883 		0.688 0.607
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.620 0.571
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.620 0.571
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.600 0.536
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.600 0.536
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0154s0024.1.p Homeodomain 3 58

Links

Other Homeodomain family TFs
Other Capsella grandiflora TFs

131 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10002831m.g Capsella rubella Carubv10002831m.g I 0.865
Al_scaffold_0006_290 Arabidopsis lyrata Al_scaffold_0006_290 I 0.816
Bostr.2128s0069 Boechera stricta Bostr.2128s0069 I 0.815
Cagra.0463s0004 Capsella grandiflora Cagra.0463s0004 I 0.707
ATHB-51 Arabidopsis thaliana AT5G03790 D 0.706
Bo9g181720 Brassica oleracea Bo9g181720 I 0.706
Bra009510 Brassica rapa Bra009510 I 0.706
ATHB51 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000249 I 0.706
Bostr.2128s0071 Boechera stricta Bostr.2128s0071 I 0.706
Cagra.0154s0025 Capsella grandiflora Cagra.0154s0025 I 0.706
Carubv10002440m.g Capsella rubella Carubv10002440m.g I 0.706
Thhalv10014547m.g Eutrema salsugineum Thhalv10014547m.g I 0.706
Cla018017 Citrullus lanatus Cla018017 I 0.705
Cucsa.378700 Cucumis sativus Cucsa.378700 I 0.705
PGSC0003DMG400002692 Solanum tuberosum PGSC0003DMG400002692 I 0.703
Solyc09g008810.2 Solanum lycopersicum Solyc09g008810.2 I 0.703
Bo3g002560 Brassica oleracea Bo3g002560 I 0.702
mgf022748m Mimulus guttatus mgf022748m I 0.700
Carubv10003464m.g Capsella rubella Carubv10003464m.g I 0.697
mgf019824m Mimulus guttatus mgf019824m I 0.693
Thhalv10015784m.g Eutrema salsugineum Thhalv10015784m.g I 0.692
Bo2g005230 Brassica oleracea Bo2g005230 I 0.690
Bra028820 Brassica rapa Bra028820 I 0.690
evm.TU.supercontig_83.103 Carica papaya evm.TU.supercontig_83.103 N 0.689
ATHB-22 Arabidopsis thaliana AT2G36610 D 0.688
POPTR_0006s11890 Populus trichocarpa POPTR_0006s11890 I 0.673
29815.m000499 Ricinus communis 29815.m000499 I 0.673
cassava14646.m1 Manihot esculenta cassava14646.m1 I 0.673
Gorai.002G244000 Gossypium raimondii Gorai.002G244000 I 0.673
Gorai.002G244200 Gossypium raimondii Gorai.002G244200 I 0.673
MDP0000119544 Malus domestica MDP0000119544 I 0.673
MDP0000134241 Malus domestica MDP0000134241 I 0.673
MDP0000316497 Malus domestica MDP0000316497 I 0.673
MDP0000738604 Malus domestica MDP0000738604 I 0.673
Thhalv10017567m.g Eutrema salsugineum Thhalv10017567m.g I 0.672
PRUPE_ppa015952mg Prunus persica PRUPE_ppa015952mg I 0.670
TCM_022391 Theobroma cacao TCM_022391 I 0.670
Cla018641 Citrullus lanatus Cla018641 I 0.670
Pm026270 Prunus mume Pm026270 I 0.670
cassava34082.m1 Manihot esculenta cassava34082.m1 I 0.670
Cucsa.125070 Cucumis sativus Cucsa.125070 I 0.670
evm.TU.supercontig_5.106 Carica papaya evm.TU.supercontig_5.106 I 0.670
Gorai.009G409600 Gossypium raimondii Gorai.009G409600 I 0.670
Lus10008641.g Linum usitatissimum Lus10008641.g I 0.670
Lus10035583.g Linum usitatissimum Lus10035583.g I 0.670
GLYMA10G07440 Glycine max GLYMA10G07440 I 0.669
GLYMA13G21330 Glycine max GLYMA13G21330 I 0.669
VIT_08s0007g04200 Vitis vinifera VIT_08s0007g04200 I 0.668
SapurV1A.0226s0110 Salix purpurea SapurV1A.0226s0110 I 0.665
LjSGA_022706.2 Lotus japonicus LjSGA_022706.2 I 0.665
Ciclev10012525m.g Citrus clementina Ciclev10012525m.g I 0.664
orange1.1g040769m.g Citrus sinensis orange1.1g040769m.g I 0.664
Bostr.23794s0432 Boechera stricta Bostr.23794s0432 I 0.660
Cagra.0228s0052 Capsella grandiflora Cagra.0228s0052 I 0.660
Carubv10024148m.g Capsella rubella Carubv10024148m.g I 0.660
gene30097-v1.0-hybrid Fragaria vesca gene30097-v1.0-hybrid I 0.658
PK15535.1 Cannabis sativa PK15535.1 I 0.658
Bo4g034490 Brassica oleracea Bo4g034490 I 0.657
Bra005259 Brassica rapa Bra005259 I 0.657
GLYMA12G18720 Glycine max GLYMA12G18720 I 0.652
PGSC0003DMG400017775 Solanum tuberosum PGSC0003DMG400017775 I 0.647
PGSC0003DMG400017787 Solanum tuberosum PGSC0003DMG400017787 I 0.647
Solyc03g034110.2 Solanum lycopersicum Solyc03g034110.2 I 0.647
ATHB22 Arabidopsis lyrata Al_scaffold_0004_2163 I 0.646
Solyc03g034130.2 Solanum lycopersicum Solyc03g034130.2 I 0.641
Eucgr.A01575 Eucalyptus grandis Eucgr.A01575 I 0.641
PGSC0003DMG400017776 Solanum tuberosum PGSC0003DMG400017776 I 0.637
Aquca_009_01021 Aquilegia coerulea Aquca_009_01021 I 0.635
AMTR_s00027p00144540 Amborella trichopoda AMTR_s00027p00144540 I 0.631
VIT_18s0001g06430 Vitis vinifera VIT_18s0001g06430 I 0.627
GSMUA_Achr6G10660_001 Musa acuminata GSMUA_Achr6G10660_001 I 0.626
HAT7 Arabidopsis thaliana AT5G15150 I 0.620
Bo2g012410 Brassica oleracea Bo2g012410 I 0.620
Bo3g010120 Brassica oleracea Bo3g010120 I 0.620
Bo9g165360 Brassica oleracea Bo9g165360 I 0.620
Bra006285 Brassica rapa Bra006285 I 0.620
Bra008717 Brassica rapa Bra008717 I 0.620
Bra023506 Brassica rapa Bra023506 I 0.620
ATHB-3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001192 I 0.620
GLYMA09G37410 Glycine max GLYMA09G37410 I 0.620
GLYMA18G49290 Glycine max GLYMA18G49290 I 0.620
GLYMA19G02490 Glycine max GLYMA19G02490 I 0.620
GSMUA_Achr10G18860_001 Musa acuminata GSMUA_Achr10G18860_001 I 0.620
GSMUA_Achr4G00550_001 Musa acuminata GSMUA_Achr4G00550_001 I 0.620
GSMUA_Achr6G36450_001 Musa acuminata GSMUA_Achr6G36450_001 I 0.620
MTR_6g011610 Medicago truncatula MTR_6g011610 I 0.620
POPTR_0017s11800 Populus trichocarpa POPTR_0017s11800 I 0.620
PRUPE_ppa020465mg Prunus persica PRUPE_ppa020465mg I 0.620
TCM_018470 Theobroma cacao TCM_018470 I 0.620
Ca_10527 Cicer arietinum Ca_10527 I 0.620
Cla010510 Citrullus lanatus Cla010510 I 0.620
Pm015861 Prunus mume Pm015861 I 0.620
29822.m003500 Ricinus communis 29822.m003500 I 0.620
cassava13234.valid.m1 Manihot esculenta cassava13234.valid.m1 I 0.620
cassava39955.m1 Manihot esculenta cassava39955.m1 I 0.620
Cucsa.158420 Cucumis sativus Cucsa.158420 I 0.620
Bostr.2902s0249 Boechera stricta Bostr.2902s0249 I 0.620
Cagra.1036s0042 Capsella grandiflora Cagra.1036s0042 I 0.620
Carubv10001498m.g Capsella rubella Carubv10001498m.g I 0.620
Ciclev10012352m.g Citrus clementina Ciclev10012352m.g I 0.620
evm.TU.supercontig_14.18 Carica papaya evm.TU.supercontig_14.18 I 0.620
gene28322-v1.0-hybrid Fragaria vesca gene28322-v1.0-hybrid I 0.620
Gorai.001G256300 Gossypium raimondii Gorai.001G256300 I 0.620
Gorai.006G022100 Gossypium raimondii Gorai.006G022100 I 0.620
MDP0000124827 Malus domestica MDP0000124827 I 0.620
MDP0000737128 Malus domestica MDP0000737128 I 0.620
orange1.1g041877m.g Citrus sinensis orange1.1g041877m.g I 0.620
SapurV1A.1260s0050 Salix purpurea SapurV1A.1260s0050 I 0.620
SapurV1A.2065s0030 Salix purpurea SapurV1A.2065s0030 I 0.620
Thhalv10014157m.g Eutrema salsugineum Thhalv10014157m.g I 0.620
PK20392.1 Cannabis sativa PK20392.1 D 0.620
chr2.LjT39I02.10.nc Lotus japonicus chr2.LjT39I02.10.nc I 0.620
Bo4g100070 Brassica oleracea Bo4g100070 I 0.619
BRADI4G35910 Brachypodium distachyon BRADI4G35910 I 0.613
PGSC0003DMG400018509 Solanum tuberosum PGSC0003DMG400018509 I 0.613
Solyc03g082550.2 Solanum lycopersicum Solyc03g082550.2 I 0.613
Pavir.Hb01447 Panicum virgatum Pavir.Hb01447 I 0.613
PGSC0003DMG400005472 Solanum tuberosum PGSC0003DMG400005472 I 0.612
Solyc06g053220.2 Solanum lycopersicum Solyc06g053220.2 I 0.612
Eucgr.I01934 Eucalyptus grandis Eucgr.I01934 I 0.612
MTR_1g061660 Medicago truncatula MTR_1g061660 I 0.611
Bra014417 Brassica rapa Bra014417 I 0.605
Eucgr.I02255 Eucalyptus grandis Eucgr.I02255 I 0.601
ATHB-20 Arabidopsis thaliana AT3G01220 D 0.600
Bo1g158730 Brassica oleracea Bo1g158730 I 0.600
Bra039135 Brassica rapa Bra039135 I 0.600
ATHB20 Arabidopsis lyrata scaffold_300109.1 I 0.600
Bostr.1460s0094 Boechera stricta Bostr.1460s0094 I 0.600
Cagra.1390s0021 Capsella grandiflora Cagra.1390s0021 I 0.600
Carubv10014214m.g Capsella rubella Carubv10014214m.g I 0.600
Thhalv10021334m.g Eutrema salsugineum Thhalv10021334m.g I 0.600