Gorai.002G244000 (Gossypium raimondii)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Gorai.002G244000 T228679_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-51
M00867_2.00 		Arabidopsis thaliana
ATWATKNN
NNMATWAT		 PBM
Franco-Zorrilla et al.(2014)
ATHB51 		0.787 0.860
ATHB-51
M06927_2.00 		Arabidopsis thaliana
DNCAATAATTGAD
HTCAATTATTGNH		 Dap-seq
OMalley et al.(2016)
LMI1_col_a 		0.787 0.860
ATHB-51
M06928_2.00 		Arabidopsis thaliana
NDNCAATAATTGA
TCAATTATTGNHN		 Dap-seq
OMalley et al.(2016)
LMI1_colamp_a 		0.787 0.860
ATHB-22
M02041_2.00 		Arabidopsis thaliana
NNATAATWWWNNN
NNNWWWATTATNN		 PBM
Weirauch et al.(2014)
pTH5883 		0.757 0.772
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.694 0.649
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.694 0.649
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.674 0.632
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.674 0.632
ATHB-12
M00865_2.00 		Arabidopsis thaliana
NNNNNNNN
NNNNNNNN		 PBM
Franco-Zorrilla et al.(2014)
ATHB12 		0.619 0.526
ATHB-12
M02045_2.00 		Arabidopsis thaliana
BHWWWWWWDV
BHWWWWWWDV		 PBM
Weirauch et al.(2014)
pTH7207 		0.619 0.526
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.002G244000.1 Homeodomain 65 121

Links

Other Homeodomain family TFs
Other Gossypium raimondii TFs

192 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava14646.m1 Manihot esculenta cassava14646.m1 I 0.798
Gorai.002G244200 Gossypium raimondii Gorai.002G244200 I 0.798
POPTR_0006s11890 Populus trichocarpa POPTR_0006s11890 I 0.796
Cla018017 Citrullus lanatus Cla018017 I 0.796
29815.m000499 Ricinus communis 29815.m000499 I 0.796
Cucsa.378700 Cucumis sativus Cucsa.378700 I 0.796
Carubv10003464m.g Capsella rubella Carubv10003464m.g I 0.796
PGSC0003DMG400002692 Solanum tuberosum PGSC0003DMG400002692 I 0.795
Solyc09g008810.2 Solanum lycopersicum Solyc09g008810.2 I 0.795
MDP0000119544 Malus domestica MDP0000119544 I 0.795
MDP0000134241 Malus domestica MDP0000134241 I 0.795
MDP0000738604 Malus domestica MDP0000738604 I 0.795
PRUPE_ppa015952mg Prunus persica PRUPE_ppa015952mg I 0.794
TCM_022391 Theobroma cacao TCM_022391 I 0.794
SapurV1A.0226s0110 Salix purpurea SapurV1A.0226s0110 I 0.794
Pm026270 Prunus mume Pm026270 I 0.792
cassava34082.m1 Manihot esculenta cassava34082.m1 I 0.792
evm.TU.supercontig_5.106 Carica papaya evm.TU.supercontig_5.106 I 0.792
Gorai.009G409600 Gossypium raimondii Gorai.009G409600 I 0.792
Lus10008641.g Linum usitatissimum Lus10008641.g I 0.792
Lus10035583.g Linum usitatissimum Lus10035583.g I 0.792
ATHB-51 Arabidopsis thaliana AT5G03790 D 0.787
Bo9g181720 Brassica oleracea Bo9g181720 I 0.787
Bra009510 Brassica rapa Bra009510 I 0.787
ATHB51 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000249 I 0.787
Bostr.2128s0071 Boechera stricta Bostr.2128s0071 I 0.787
Cagra.0154s0025 Capsella grandiflora Cagra.0154s0025 I 0.787
Carubv10002440m.g Capsella rubella Carubv10002440m.g I 0.787
Thhalv10014547m.g Eutrema salsugineum Thhalv10014547m.g I 0.787
mgf019824m Mimulus guttatus mgf019824m I 0.784
Bo3g002560 Brassica oleracea Bo3g002560 I 0.782
gene30097-v1.0-hybrid Fragaria vesca gene30097-v1.0-hybrid I 0.780
PK15535.1 Cannabis sativa PK15535.1 I 0.780
GLYMA10G07440 Glycine max GLYMA10G07440 I 0.771
GLYMA13G21330 Glycine max GLYMA13G21330 I 0.771
Bo2g005230 Brassica oleracea Bo2g005230 I 0.770
Bra028820 Brassica rapa Bra028820 I 0.770
Cla018641 Citrullus lanatus Cla018641 I 0.770
Cucsa.125070 Cucumis sativus Cucsa.125070 I 0.770
VIT_08s0007g04200 Vitis vinifera VIT_08s0007g04200 I 0.769
mgf022748m Mimulus guttatus mgf022748m I 0.769
LjSGA_022706.2 Lotus japonicus LjSGA_022706.2 I 0.767
Cagra.0463s0004 Capsella grandiflora Cagra.0463s0004 I 0.764
Ciclev10012525m.g Citrus clementina Ciclev10012525m.g I 0.764
orange1.1g040769m.g Citrus sinensis orange1.1g040769m.g I 0.764
Bostr.23794s0432 Boechera stricta Bostr.23794s0432 I 0.761
Cagra.0228s0052 Capsella grandiflora Cagra.0228s0052 I 0.761
Carubv10024148m.g Capsella rubella Carubv10024148m.g I 0.761
ATHB-22 Arabidopsis thaliana AT2G36610 D 0.757
Bo4g034490 Brassica oleracea Bo4g034490 I 0.757
Bra005259 Brassica rapa Bra005259 I 0.757
Thhalv10015784m.g Eutrema salsugineum Thhalv10015784m.g I 0.750
ATHB22 Arabidopsis lyrata Al_scaffold_0004_2163 I 0.747
Thhalv10017567m.g Eutrema salsugineum Thhalv10017567m.g I 0.741
GLYMA06G35050 Glycine max GLYMA06G35050 I 0.720
Aquca_009_01021 Aquilegia coerulea Aquca_009_01021 I 0.715
Eucgr.A01421 Eucalyptus grandis Eucgr.A01421 I 0.712
MTR_1g061660 Medicago truncatula MTR_1g061660 I 0.711
Eucgr.A01575 Eucalyptus grandis Eucgr.A01575 I 0.710
gene18656-v1.0-hybrid Fragaria vesca gene18656-v1.0-hybrid I 0.708
VIT_18s0001g06430 Vitis vinifera VIT_18s0001g06430 I 0.701
Bo2g042250 Brassica oleracea Bo2g042250 I 0.699
Bra022687 Brassica rapa Bra022687 I 0.699
HAT7 Arabidopsis thaliana AT5G15150 I 0.694
ATHB-52 Arabidopsis thaliana AT5G53980 I 0.694
Bo2g012410 Brassica oleracea Bo2g012410 I 0.694
Bo3g010120 Brassica oleracea Bo3g010120 I 0.694
Bo9g165360 Brassica oleracea Bo9g165360 I 0.694
Bra006285 Brassica rapa Bra006285 I 0.694
Bra008717 Brassica rapa Bra008717 I 0.694
Bra023506 Brassica rapa Bra023506 I 0.694
ATHB-3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001192 I 0.694
ATHB52 Arabidopsis lyrata fgenesh2_kg.8__1293__AT5G53980.1 I 0.694
GLYMA09G37410 Glycine max GLYMA09G37410 I 0.694
GLYMA18G49290 Glycine max GLYMA18G49290 I 0.694
GLYMA19G02490 Glycine max GLYMA19G02490 I 0.694
GSMUA_Achr10G18860_001 Musa acuminata GSMUA_Achr10G18860_001 I 0.694
GSMUA_Achr4G00550_001 Musa acuminata GSMUA_Achr4G00550_001 I 0.694
MTR_6g011610 Medicago truncatula MTR_6g011610 I 0.694
POPTR_0017s11800 Populus trichocarpa POPTR_0017s11800 I 0.694
PRUPE_ppa020465mg Prunus persica PRUPE_ppa020465mg I 0.694
TCM_018470 Theobroma cacao TCM_018470 I 0.694
Ca_10527 Cicer arietinum Ca_10527 I 0.694
Ca_20151 Cicer arietinum Ca_20151 I 0.694
Cla010510 Citrullus lanatus Cla010510 I 0.694
Pm015861 Prunus mume Pm015861 I 0.694
29822.m003500 Ricinus communis 29822.m003500 I 0.694
cassava13234.valid.m1 Manihot esculenta cassava13234.valid.m1 I 0.694
cassava39955.m1 Manihot esculenta cassava39955.m1 I 0.694
Cucsa.158420 Cucumis sativus Cucsa.158420 I 0.694
Bostr.26833s0878 Boechera stricta Bostr.26833s0878 I 0.694
Bostr.2902s0249 Boechera stricta Bostr.2902s0249 I 0.694
Cagra.1036s0042 Capsella grandiflora Cagra.1036s0042 I 0.694
Cagra.4622s0007 Capsella grandiflora Cagra.4622s0007 I 0.694
Carubv10001498m.g Capsella rubella Carubv10001498m.g I 0.694
Carubv10027280m.g Capsella rubella Carubv10027280m.g I 0.694
Ciclev10012352m.g Citrus clementina Ciclev10012352m.g I 0.694
evm.TU.supercontig_14.18 Carica papaya evm.TU.supercontig_14.18 I 0.694
gene28322-v1.0-hybrid Fragaria vesca gene28322-v1.0-hybrid I 0.694
Gorai.001G256300 Gossypium raimondii Gorai.001G256300 I 0.694
Gorai.006G022100 Gossypium raimondii Gorai.006G022100 I 0.694
MDP0000124827 Malus domestica MDP0000124827 I 0.694
MDP0000737128 Malus domestica MDP0000737128 I 0.694
orange1.1g041877m.g Citrus sinensis orange1.1g041877m.g I 0.694
SapurV1A.1260s0050 Salix purpurea SapurV1A.1260s0050 I 0.694
SapurV1A.2065s0030 Salix purpurea SapurV1A.2065s0030 I 0.694
Thhalv10014157m.g Eutrema salsugineum Thhalv10014157m.g I 0.694
Thhalv10014905m.g Eutrema salsugineum Thhalv10014905m.g I 0.694
PK20392.1 Cannabis sativa PK20392.1 D 0.694
chr2.LjT39I02.10.nc Lotus japonicus chr2.LjT39I02.10.nc I 0.694
GSMUA_Achr6G36450_001 Musa acuminata GSMUA_Achr6G36450_001 I 0.689
GSMUA_Achr6G10660_001 Musa acuminata GSMUA_Achr6G10660_001 I 0.687
Eucgr.I01934 Eucalyptus grandis Eucgr.I01934 I 0.686
BRADI4G35910 Brachypodium distachyon BRADI4G35910 I 0.682
GRMZM2G034113 Zea mays GRMZM2G034113 I 0.682
GRMZM2G041462 Zea mays GRMZM2G041462 I 0.682
Sb02g030660 Sorghum bicolor Sb02g030660 I 0.682
Si030983m.g Setaria italica Si030983m.g I 0.682
Pavir.Ba01249 Panicum virgatum Pavir.Ba01249 I 0.682
Pavir.Bb02633 Panicum virgatum Pavir.Bb02633 I 0.682
Al_scaffold_0006_290 Arabidopsis lyrata Al_scaffold_0006_290 I 0.678
AMTR_s00027p00144540 Amborella trichopoda AMTR_s00027p00144540 I 0.677
MTR_7g103340 Medicago truncatula MTR_7g103340 I 0.677
PRUPE_ppa010647mg Prunus persica PRUPE_ppa010647mg I 0.676
Pm018314 Prunus mume Pm018314 I 0.676
Bostr.2128s0069 Boechera stricta Bostr.2128s0069 I 0.676
Eucgr.I02255 Eucalyptus grandis Eucgr.I02255 I 0.675
ATHB-20 Arabidopsis thaliana AT3G01220 D 0.674
Bo1g158730 Brassica oleracea Bo1g158730 I 0.674
Bra039135 Brassica rapa Bra039135 I 0.674
ATHB20 Arabidopsis lyrata scaffold_300109.1 I 0.674
Bostr.1460s0094 Boechera stricta Bostr.1460s0094 I 0.674
Cagra.1390s0021 Capsella grandiflora Cagra.1390s0021 I 0.674
Carubv10014214m.g Capsella rubella Carubv10014214m.g I 0.674
Thhalv10021334m.g Eutrema salsugineum Thhalv10021334m.g I 0.674
Cagra.0154s0024 Capsella grandiflora Cagra.0154s0024 I 0.673
Carubv10002831m.g Capsella rubella Carubv10002831m.g I 0.672
GLYMA19G37380 Glycine max GLYMA19G37380 I 0.671
Ca_00750 Cicer arietinum Ca_00750 I 0.671
Bo12274s010 Brassica oleracea Bo12274s010 I 0.670
SapurV1A.3101s0010 Salix purpurea SapurV1A.3101s0010 I 0.669
POPTR_0001s40540 Populus trichocarpa POPTR_0001s40540 I 0.668
SapurV1A.0207s0080 Salix purpurea SapurV1A.0207s0080 I 0.668
POPTR_0017s04820 Populus trichocarpa POPTR_0017s04820 I 0.665
29983.m003123 Ricinus communis 29983.m003123 I 0.665
SapurV1A.2554s0010 Salix purpurea SapurV1A.2554s0010 I 0.665
PGSC0003DMG400031777 Solanum tuberosum PGSC0003DMG400031777 I 0.663
Solyc02g077590.1 Solanum lycopersicum Solyc02g077590.1 I 0.663
GLYMA13G05270 Glycine max GLYMA13G05270 I 0.661
PGSC0003DMG400021278 Solanum tuberosum PGSC0003DMG400021278 I 0.659
evm.TU.supercontig_80.1 Carica papaya evm.TU.supercontig_80.1 I 0.656
Pavir.Hb01447 Panicum virgatum Pavir.Hb01447 I 0.653
VIT_16s0098g01170 Vitis vinifera VIT_16s0098g01170 I 0.652
GLYMA03G34710 Glycine max GLYMA03G34710 I 0.649
VIT_19s0014g02110 Vitis vinifera VIT_19s0014g02110 I 0.647
MDP0000311522 Malus domestica MDP0000311522 I 0.643
VIT_10s0003g00380 Vitis vinifera VIT_10s0003g00380 I 0.642
PRUPE_ppa017711mg Prunus persica PRUPE_ppa017711mg I 0.640
Pm011328 Prunus mume Pm011328 I 0.640
MDP0000909160 Malus domestica MDP0000909160 I 0.638
POPTR_0011s11510 Populus trichocarpa POPTR_0011s11510 I 0.635
TCM_031644 Theobroma cacao TCM_031644 I 0.635
mgf013301m Mimulus guttatus mgf013301m I 0.635
Gorai.002G067100 Gossypium raimondii Gorai.002G067100 I 0.635
Lus10003492.g Linum usitatissimum Lus10003492.g I 0.635
Lus10013103.g Linum usitatissimum Lus10013103.g I 0.635
MDP0000146339 Malus domestica MDP0000146339 I 0.634
POPTR_0007s01370 Populus trichocarpa POPTR_0007s01370 I 0.625
mgf025174m Mimulus guttatus mgf025174m I 0.625
Thhalv10006221m.g Eutrema salsugineum Thhalv10006221m.g I 0.624
MTR_8g026960 Medicago truncatula MTR_8g026960 I 0.623
Ca_17608 Cicer arietinum Ca_17608 I 0.623
Ciclev10009522m.g Citrus clementina Ciclev10009522m.g I 0.623
MDP0000316497 Malus domestica MDP0000316497 I 0.623
orange1.1g035661m.g Citrus sinensis orange1.1g035661m.g I 0.623
gene24976-v1.0-hybrid Fragaria vesca gene24976-v1.0-hybrid I 0.620
ATHB-12 Arabidopsis thaliana AT3G61890 D 0.619
Bo8g097390 Brassica oleracea Bo8g097390 I 0.619
Bra007637 Brassica rapa Bra007637 I 0.619
ATHB-12 Arabidopsis lyrata fgenesh2_kg.5__2686__AT3G61890.1 I 0.619
Gorai.012G055400 Gossypium raimondii Gorai.012G055400 I 0.618
fgenesh1_pg.scaffold_143000038 Physcomitrella patens fgenesh1_pg.scaffold_143000038 I 0.617
Solyc07g062790.1 Solanum lycopersicum Solyc07g062790.1 I 0.616
PGSC0003DMG402012439 Solanum tuberosum PGSC0003DMG402012439 I 0.615
PGSC0003DMG400017775 Solanum tuberosum PGSC0003DMG400017775 I 0.611
PGSC0003DMG400017776 Solanum tuberosum PGSC0003DMG400017776 I 0.611
PGSC0003DMG400017787 Solanum tuberosum PGSC0003DMG400017787 I 0.611
Solyc03g034110.2 Solanum lycopersicum Solyc03g034110.2 I 0.611
Bo9g181710 Brassica oleracea Bo9g181710 I 0.607
Solyc03g034130.2 Solanum lycopersicum Solyc03g034130.2 I 0.605
GSMUA_Achr9G14960_001 Musa acuminata GSMUA_Achr9G14960_001 I 0.602
Solyc03g034120.2 Solanum lycopersicum Solyc03g034120.2 I 0.601