POPTR_0001s40540 (Populus trichocarpa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 POPTR_0001s40540 T222473_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.722 0.614
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.722 0.614
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.722 0.596
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.722 0.596
ATHB-12
M00865_2.00 		Arabidopsis thaliana
NNNNNNNN
NNNNNNNN		 PBM
Franco-Zorrilla et al.(2014)
ATHB12 		0.636 0.579
ATHB-12
M02045_2.00 		Arabidopsis thaliana
BHWWWWWWDV
BHWWWWWWDV		 PBM
Weirauch et al.(2014)
pTH7207 		0.636 0.579
ATHB-51
M00867_2.00 		Arabidopsis thaliana
ATWATKNN
NNMATWAT		 PBM
Franco-Zorrilla et al.(2014)
ATHB51 		0.626 0.526
ATHB-51
M06927_2.00 		Arabidopsis thaliana
DNCAATAATTGAD
HTCAATTATTGNH		 Dap-seq
OMalley et al.(2016)
LMI1_col_a 		0.626 0.526
ATHB-51
M06928_2.00 		Arabidopsis thaliana
NDNCAATAATTGA
TCAATTATTGNHN		 Dap-seq
OMalley et al.(2016)
LMI1_colamp_a 		0.626 0.526
ATHB-22
M02041_2.00 		Arabidopsis thaliana
NNATAATWWWNNN
NNNWWWATTATNN		 PBM
Weirauch et al.(2014)
pTH5883 		0.623 0.474
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s40540.1 Homeodomain 18 74

Links

Other Homeodomain family TFs
Other Populus trichocarpa TFs

182 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.0207s0080 Salix purpurea SapurV1A.0207s0080 I 0.867
GLYMA06G35050 Glycine max GLYMA06G35050 I 0.803
POPTR_0011s11510 Populus trichocarpa POPTR_0011s11510 I 0.799
TCM_031644 Theobroma cacao TCM_031644 I 0.794
Gorai.002G067100 Gossypium raimondii Gorai.002G067100 I 0.793
Lus10003492.g Linum usitatissimum Lus10003492.g I 0.785
Lus10013103.g Linum usitatissimum Lus10013103.g I 0.785
gene24976-v1.0-hybrid Fragaria vesca gene24976-v1.0-hybrid I 0.778
VIT_19s0014g02110 Vitis vinifera VIT_19s0014g02110 I 0.773
evm.TU.supercontig_80.1 Carica papaya evm.TU.supercontig_80.1 I 0.773
MDP0000146339 Malus domestica MDP0000146339 I 0.770
PRUPE_ppa017711mg Prunus persica PRUPE_ppa017711mg I 0.768
Pm011328 Prunus mume Pm011328 I 0.768
mgf013301m Mimulus guttatus mgf013301m I 0.763
MDP0000909160 Malus domestica MDP0000909160 I 0.757
Ciclev10009522m.g Citrus clementina Ciclev10009522m.g I 0.742
orange1.1g035661m.g Citrus sinensis orange1.1g035661m.g I 0.742
GLYMA12G18720 Glycine max GLYMA12G18720 I 0.739
ATHB-52 Arabidopsis thaliana AT5G53980 I 0.728
ATHB52 Arabidopsis lyrata fgenesh2_kg.8__1293__AT5G53980.1 I 0.728
Bostr.26833s0878 Boechera stricta Bostr.26833s0878 I 0.728
Cagra.4622s0007 Capsella grandiflora Cagra.4622s0007 I 0.728
Carubv10027280m.g Capsella rubella Carubv10027280m.g I 0.728
HAT7 Arabidopsis thaliana AT5G15150 I 0.723
Bo2g012410 Brassica oleracea Bo2g012410 I 0.723
Bo3g010120 Brassica oleracea Bo3g010120 I 0.723
Bra006285 Brassica rapa Bra006285 I 0.723
Bra023506 Brassica rapa Bra023506 I 0.723
ATHB-3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001192 I 0.723
GSMUA_Achr10G18860_001 Musa acuminata GSMUA_Achr10G18860_001 I 0.723
GSMUA_Achr4G00550_001 Musa acuminata GSMUA_Achr4G00550_001 I 0.723
Bostr.2902s0249 Boechera stricta Bostr.2902s0249 I 0.723
Cagra.1036s0042 Capsella grandiflora Cagra.1036s0042 I 0.723
Carubv10001498m.g Capsella rubella Carubv10001498m.g I 0.723
Thhalv10014157m.g Eutrema salsugineum Thhalv10014157m.g I 0.723
ATHB-20 Arabidopsis thaliana AT3G01220 D 0.722
Bo1g158730 Brassica oleracea Bo1g158730 I 0.722
Bo9g165360 Brassica oleracea Bo9g165360 I 0.722
Bra008717 Brassica rapa Bra008717 I 0.722
Bra039135 Brassica rapa Bra039135 I 0.722
GLYMA09G37410 Glycine max GLYMA09G37410 I 0.722
GLYMA18G49290 Glycine max GLYMA18G49290 I 0.722
GLYMA19G02490 Glycine max GLYMA19G02490 I 0.722
MTR_6g011610 Medicago truncatula MTR_6g011610 I 0.722
POPTR_0017s11800 Populus trichocarpa POPTR_0017s11800 I 0.722
PRUPE_ppa020465mg Prunus persica PRUPE_ppa020465mg I 0.722
ATHB20 Arabidopsis lyrata scaffold_300109.1 I 0.722
TCM_018470 Theobroma cacao TCM_018470 I 0.722
Ca_10527 Cicer arietinum Ca_10527 I 0.722
Cla010510 Citrullus lanatus Cla010510 I 0.722
Pm015861 Prunus mume Pm015861 I 0.722
29822.m003500 Ricinus communis 29822.m003500 I 0.722
cassava13234.valid.m1 Manihot esculenta cassava13234.valid.m1 I 0.722
cassava39955.m1 Manihot esculenta cassava39955.m1 I 0.722
Cucsa.158420 Cucumis sativus Cucsa.158420 I 0.722
Bostr.1460s0094 Boechera stricta Bostr.1460s0094 I 0.722
Cagra.1390s0021 Capsella grandiflora Cagra.1390s0021 I 0.722
Carubv10014214m.g Capsella rubella Carubv10014214m.g I 0.722
Ciclev10012352m.g Citrus clementina Ciclev10012352m.g I 0.722
Eucgr.I01934 Eucalyptus grandis Eucgr.I01934 I 0.722
Eucgr.I02255 Eucalyptus grandis Eucgr.I02255 I 0.722
evm.TU.supercontig_14.18 Carica papaya evm.TU.supercontig_14.18 I 0.722
gene28322-v1.0-hybrid Fragaria vesca gene28322-v1.0-hybrid I 0.722
Gorai.006G022100 Gossypium raimondii Gorai.006G022100 I 0.722
MDP0000124827 Malus domestica MDP0000124827 I 0.722
MDP0000737128 Malus domestica MDP0000737128 I 0.722
orange1.1g041877m.g Citrus sinensis orange1.1g041877m.g I 0.722
SapurV1A.1260s0050 Salix purpurea SapurV1A.1260s0050 I 0.722
SapurV1A.2065s0030 Salix purpurea SapurV1A.2065s0030 I 0.722
Thhalv10021334m.g Eutrema salsugineum Thhalv10021334m.g I 0.722
PK20392.1 Cannabis sativa PK20392.1 D 0.722
chr2.LjT39I02.10.nc Lotus japonicus chr2.LjT39I02.10.nc I 0.722
PGSC0003DMG400021278 Solanum tuberosum PGSC0003DMG400021278 I 0.718
GSMUA_Achr6G10660_001 Musa acuminata GSMUA_Achr6G10660_001 I 0.717
VIT_18s0001g06430 Vitis vinifera VIT_18s0001g06430 I 0.717
PGSC0003DMG400031777 Solanum tuberosum PGSC0003DMG400031777 I 0.716
VIT_10s0003g00380 Vitis vinifera VIT_10s0003g00380 I 0.716
Thhalv10014905m.g Eutrema salsugineum Thhalv10014905m.g I 0.716
Bo2g042250 Brassica oleracea Bo2g042250 I 0.711
Bra022687 Brassica rapa Bra022687 I 0.711
VIT_16s0098g01170 Vitis vinifera VIT_16s0098g01170 I 0.709
GSMUA_Achr6G36450_001 Musa acuminata GSMUA_Achr6G36450_001 I 0.706
PGSC0003DMG402012439 Solanum tuberosum PGSC0003DMG402012439 I 0.706
Solyc07g062790.1 Solanum lycopersicum Solyc07g062790.1 I 0.703
mgf025174m Mimulus guttatus mgf025174m I 0.701
gene18656-v1.0-hybrid Fragaria vesca gene18656-v1.0-hybrid I 0.701
Gorai.001G256300 Gossypium raimondii Gorai.001G256300 I 0.700
GLYMA13G05270 Glycine max GLYMA13G05270 I 0.689
Cucsa.125070 Cucumis sativus Cucsa.125070 I 0.689
Bo12274s010 Brassica oleracea Bo12274s010 I 0.688
AMTR_s00027p00144540 Amborella trichopoda AMTR_s00027p00144540 I 0.685
BRADI4G35910 Brachypodium distachyon BRADI4G35910 I 0.682
GRMZM2G041462 Zea mays GRMZM2G041462 I 0.682
Sb02g030660 Sorghum bicolor Sb02g030660 I 0.682
Si030983m.g Setaria italica Si030983m.g I 0.682
Pavir.Ba01249 Panicum virgatum Pavir.Ba01249 I 0.682
Pavir.Bb02633 Panicum virgatum Pavir.Bb02633 I 0.682
GRMZM2G034113 Zea mays GRMZM2G034113 I 0.678
POPTR_0017s04820 Populus trichocarpa POPTR_0017s04820 I 0.676
29983.m003123 Ricinus communis 29983.m003123 I 0.676
Eucgr.A01421 Eucalyptus grandis Eucgr.A01421 I 0.676
SapurV1A.2554s0010 Salix purpurea SapurV1A.2554s0010 I 0.676
SapurV1A.3101s0010 Salix purpurea SapurV1A.3101s0010 I 0.676
MTR_1g061660 Medicago truncatula MTR_1g061660 I 0.675
Solyc02g077590.1 Solanum lycopersicum Solyc02g077590.1 I 0.672
PRUPE_ppa010647mg Prunus persica PRUPE_ppa010647mg I 0.669
Pm018314 Prunus mume Pm018314 I 0.669
cassava46810.m1 Manihot esculenta cassava46810.m1 I 0.668
Gorai.002G244000 Gossypium raimondii Gorai.002G244000 I 0.668
cassava14646.m1 Manihot esculenta cassava14646.m1 I 0.667
cassava34082.m1 Manihot esculenta cassava34082.m1 I 0.667
VIT_08s0007g04200 Vitis vinifera VIT_08s0007g04200 I 0.659
Cla018641 Citrullus lanatus Cla018641 I 0.658
LjSGA_022706.2 Lotus japonicus LjSGA_022706.2 I 0.658
Gorai.012G055400 Gossypium raimondii Gorai.012G055400 I 0.646
PGSC0003DMG400002692 Solanum tuberosum PGSC0003DMG400002692 I 0.637
Solyc06g053220.2 Solanum lycopersicum Solyc06g053220.2 I 0.637
Solyc09g008810.2 Solanum lycopersicum Solyc09g008810.2 I 0.637
mgf022748m Mimulus guttatus mgf022748m I 0.637
Ciclev10012525m.g Citrus clementina Ciclev10012525m.g I 0.637
orange1.1g040769m.g Citrus sinensis orange1.1g040769m.g I 0.637
ATHB-12 Arabidopsis thaliana AT3G61890 D 0.636
Bo8g097390 Brassica oleracea Bo8g097390 I 0.636
Bra007637 Brassica rapa Bra007637 I 0.636
ATHB-12 Arabidopsis lyrata fgenesh2_kg.5__2686__AT3G61890.1 I 0.636
GLYMA10G07440 Glycine max GLYMA10G07440 I 0.635
GLYMA13G21330 Glycine max GLYMA13G21330 I 0.635
POPTR_0006s11890 Populus trichocarpa POPTR_0006s11890 I 0.635
PRUPE_ppa015952mg Prunus persica PRUPE_ppa015952mg I 0.635
TCM_022391 Theobroma cacao TCM_022391 I 0.635
Cla018017 Citrullus lanatus Cla018017 I 0.635
Pm026270 Prunus mume Pm026270 I 0.635
29815.m000499 Ricinus communis 29815.m000499 I 0.635
Cucsa.378700 Cucumis sativus Cucsa.378700 I 0.635
mgf019824m Mimulus guttatus mgf019824m I 0.635
Aquca_009_01021 Aquilegia coerulea Aquca_009_01021 I 0.635
evm.TU.supercontig_5.106 Carica papaya evm.TU.supercontig_5.106 I 0.635
gene30097-v1.0-hybrid Fragaria vesca gene30097-v1.0-hybrid I 0.635
Gorai.002G244200 Gossypium raimondii Gorai.002G244200 I 0.635
Gorai.009G409600 Gossypium raimondii Gorai.009G409600 I 0.635
Lus10008641.g Linum usitatissimum Lus10008641.g I 0.635
Lus10035583.g Linum usitatissimum Lus10035583.g I 0.635
MDP0000119544 Malus domestica MDP0000119544 I 0.635
MDP0000134241 Malus domestica MDP0000134241 I 0.635
MDP0000311522 Malus domestica MDP0000311522 I 0.635
MDP0000738604 Malus domestica MDP0000738604 I 0.635
SapurV1A.0226s0110 Salix purpurea SapurV1A.0226s0110 I 0.635
PK15535.1 Cannabis sativa PK15535.1 I 0.635
PGSC0003DMG400018509 Solanum tuberosum PGSC0003DMG400018509 I 0.633
Solyc03g082550.2 Solanum lycopersicum Solyc03g082550.2 I 0.633
PGSC0003DMG400005472 Solanum tuberosum PGSC0003DMG400005472 I 0.631
Eucgr.A01575 Eucalyptus grandis Eucgr.A01575 I 0.629
ATHB-51 Arabidopsis thaliana AT5G03790 D 0.626
Bo2g005230 Brassica oleracea Bo2g005230 I 0.626
Bo3g002560 Brassica oleracea Bo3g002560 I 0.626
Bo9g181720 Brassica oleracea Bo9g181720 I 0.626
Bra009510 Brassica rapa Bra009510 I 0.626
Bra028820 Brassica rapa Bra028820 I 0.626
ATHB51 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000249 I 0.626
Bostr.2128s0071 Boechera stricta Bostr.2128s0071 I 0.626
Cagra.0154s0025 Capsella grandiflora Cagra.0154s0025 I 0.626
Cagra.0463s0004 Capsella grandiflora Cagra.0463s0004 I 0.626
Carubv10002440m.g Capsella rubella Carubv10002440m.g I 0.626
Carubv10003464m.g Capsella rubella Carubv10003464m.g I 0.626
Thhalv10014547m.g Eutrema salsugineum Thhalv10014547m.g I 0.626
Thhalv10015784m.g Eutrema salsugineum Thhalv10015784m.g I 0.626
ATHB-22 Arabidopsis thaliana AT2G36610 D 0.623
Bo4g034490 Brassica oleracea Bo4g034490 I 0.623
Bra005259 Brassica rapa Bra005259 I 0.623
Bostr.23794s0432 Boechera stricta Bostr.23794s0432 I 0.623
Cagra.0228s0052 Capsella grandiflora Cagra.0228s0052 I 0.623
Carubv10024148m.g Capsella rubella Carubv10024148m.g I 0.623
Pavir.Hb01447 Panicum virgatum Pavir.Hb01447 I 0.623
Thhalv10017567m.g Eutrema salsugineum Thhalv10017567m.g I 0.623
Thhalv10006221m.g Eutrema salsugineum Thhalv10006221m.g I 0.619
ATHB22 Arabidopsis lyrata Al_scaffold_0004_2163 I 0.616
Bra018155 Brassica rapa Bra018155 I 0.612
Bostr.13158s0194 Boechera stricta Bostr.13158s0194 I 0.604
Cagra.0483s0055 Capsella grandiflora Cagra.0483s0055 I 0.604
Carubv10017952m.g Capsella rubella Carubv10017952m.g I 0.604
LPERR02G21210 Leersia perrieri LPERR02G21210 I 0.599
MLOC_66350 Hordeum vulgare MLOC_66350 I 0.599