MDP0000909160 (Malus domestica)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 MDP0000909160 T229125_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.726 0.667
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.726 0.667
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.726 0.649
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.726 0.649
ATHB-51
M00867_2.00 		Arabidopsis thaliana
ATWATKNN
NNMATWAT		 PBM
Franco-Zorrilla et al.(2014)
ATHB51 		0.624 0.509
ATHB-51
M06927_2.00 		Arabidopsis thaliana
DNCAATAATTGAD
HTCAATTATTGNH		 Dap-seq
OMalley et al.(2016)
LMI1_col_a 		0.624 0.509
ATHB-51
M06928_2.00 		Arabidopsis thaliana
NDNCAATAATTGA
TCAATTATTGNHN		 Dap-seq
OMalley et al.(2016)
LMI1_colamp_a 		0.624 0.509
ATHB-22
M02041_2.00 		Arabidopsis thaliana
NNATAATWWWNNN
NNNWWWATTATNN		 PBM
Weirauch et al.(2014)
pTH5883 		0.622 0.509
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000909160 Homeodomain 14 70

Links

Other Homeodomain family TFs
Other Malus domestica TFs

176 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCM_031644 Theobroma cacao TCM_031644 I 0.825
PRUPE_ppa017711mg Prunus persica PRUPE_ppa017711mg I 0.823
Pm011328 Prunus mume Pm011328 I 0.823
MDP0000146339 Malus domestica MDP0000146339 I 0.822
gene24976-v1.0-hybrid Fragaria vesca gene24976-v1.0-hybrid I 0.804
Gorai.002G067100 Gossypium raimondii Gorai.002G067100 I 0.792
evm.TU.supercontig_80.1 Carica papaya evm.TU.supercontig_80.1 I 0.789
VIT_10s0003g00380 Vitis vinifera VIT_10s0003g00380 I 0.778
GLYMA06G35050 Glycine max GLYMA06G35050 I 0.761
Lus10003492.g Linum usitatissimum Lus10003492.g I 0.761
Lus10013103.g Linum usitatissimum Lus10013103.g I 0.761
PGSC0003DMG400031777 Solanum tuberosum PGSC0003DMG400031777 I 0.758
POPTR_0001s40540 Populus trichocarpa POPTR_0001s40540 I 0.757
POPTR_0011s11510 Populus trichocarpa POPTR_0011s11510 I 0.757
SapurV1A.0207s0080 Salix purpurea SapurV1A.0207s0080 I 0.757
VIT_19s0014g02110 Vitis vinifera VIT_19s0014g02110 I 0.749
PGSC0003DMG402012439 Solanum tuberosum PGSC0003DMG402012439 I 0.742
Solyc07g062790.1 Solanum lycopersicum Solyc07g062790.1 I 0.742
mgf013301m Mimulus guttatus mgf013301m I 0.739
ATHB-20 Arabidopsis thaliana AT3G01220 D 0.726
Bo1g158730 Brassica oleracea Bo1g158730 I 0.726
Bra039135 Brassica rapa Bra039135 I 0.726
GLYMA09G37410 Glycine max GLYMA09G37410 I 0.726
GLYMA18G49290 Glycine max GLYMA18G49290 I 0.726
GLYMA19G02490 Glycine max GLYMA19G02490 I 0.726
MTR_6g011610 Medicago truncatula MTR_6g011610 I 0.726
POPTR_0017s11800 Populus trichocarpa POPTR_0017s11800 I 0.726
PRUPE_ppa020465mg Prunus persica PRUPE_ppa020465mg I 0.726
ATHB20 Arabidopsis lyrata scaffold_300109.1 I 0.726
TCM_018470 Theobroma cacao TCM_018470 I 0.726
Ca_10527 Cicer arietinum Ca_10527 I 0.726
Cla010510 Citrullus lanatus Cla010510 I 0.726
Pm015861 Prunus mume Pm015861 I 0.726
29822.m003500 Ricinus communis 29822.m003500 I 0.726
cassava13234.valid.m1 Manihot esculenta cassava13234.valid.m1 I 0.726
cassava39955.m1 Manihot esculenta cassava39955.m1 I 0.726
Cucsa.158420 Cucumis sativus Cucsa.158420 I 0.726
Bostr.1460s0094 Boechera stricta Bostr.1460s0094 I 0.726
Cagra.1390s0021 Capsella grandiflora Cagra.1390s0021 I 0.726
Carubv10014214m.g Capsella rubella Carubv10014214m.g I 0.726
Ciclev10012352m.g Citrus clementina Ciclev10012352m.g I 0.726
Eucgr.I01934 Eucalyptus grandis Eucgr.I01934 I 0.726
Eucgr.I02255 Eucalyptus grandis Eucgr.I02255 I 0.726
evm.TU.supercontig_14.18 Carica papaya evm.TU.supercontig_14.18 I 0.726
gene28322-v1.0-hybrid Fragaria vesca gene28322-v1.0-hybrid I 0.726
Gorai.006G022100 Gossypium raimondii Gorai.006G022100 I 0.726
MDP0000124827 Malus domestica MDP0000124827 I 0.726
MDP0000737128 Malus domestica MDP0000737128 I 0.726
orange1.1g041877m.g Citrus sinensis orange1.1g041877m.g I 0.726
SapurV1A.1260s0050 Salix purpurea SapurV1A.1260s0050 I 0.726
SapurV1A.2065s0030 Salix purpurea SapurV1A.2065s0030 I 0.726
Thhalv10021334m.g Eutrema salsugineum Thhalv10021334m.g I 0.726
PK20392.1 Cannabis sativa PK20392.1 D 0.726
chr2.LjT39I02.10.nc Lotus japonicus chr2.LjT39I02.10.nc I 0.726
HAT7 Arabidopsis thaliana AT5G15150 I 0.725
Bo2g012410 Brassica oleracea Bo2g012410 I 0.725
Bo3g010120 Brassica oleracea Bo3g010120 I 0.725
Bo9g165360 Brassica oleracea Bo9g165360 I 0.725
Bra006285 Brassica rapa Bra006285 I 0.725
Bra008717 Brassica rapa Bra008717 I 0.725
Bra023506 Brassica rapa Bra023506 I 0.725
ATHB-3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001192 I 0.725
GSMUA_Achr10G18860_001 Musa acuminata GSMUA_Achr10G18860_001 I 0.725
GSMUA_Achr4G00550_001 Musa acuminata GSMUA_Achr4G00550_001 I 0.725
Bostr.2902s0249 Boechera stricta Bostr.2902s0249 I 0.725
Cagra.1036s0042 Capsella grandiflora Cagra.1036s0042 I 0.725
Carubv10001498m.g Capsella rubella Carubv10001498m.g I 0.725
Thhalv10014157m.g Eutrema salsugineum Thhalv10014157m.g I 0.725
ATHB-52 Arabidopsis thaliana AT5G53980 I 0.722
ATHB52 Arabidopsis lyrata fgenesh2_kg.8__1293__AT5G53980.1 I 0.722
VIT_18s0001g06430 Vitis vinifera VIT_18s0001g06430 I 0.721
PGSC0003DMG400021278 Solanum tuberosum PGSC0003DMG400021278 I 0.720
GSMUA_Achr6G10660_001 Musa acuminata GSMUA_Achr6G10660_001 I 0.718
mgf025174m Mimulus guttatus mgf025174m I 0.714
Solyc02g077590.1 Solanum lycopersicum Solyc02g077590.1 I 0.713
Ciclev10009522m.g Citrus clementina Ciclev10009522m.g I 0.713
orange1.1g035661m.g Citrus sinensis orange1.1g035661m.g I 0.713
Gorai.001G256300 Gossypium raimondii Gorai.001G256300 I 0.704
VIT_16s0098g01170 Vitis vinifera VIT_16s0098g01170 I 0.703
GSMUA_Achr6G36450_001 Musa acuminata GSMUA_Achr6G36450_001 I 0.698
GLYMA13G05270 Glycine max GLYMA13G05270 I 0.697
29983.m003123 Ricinus communis 29983.m003123 I 0.694
gene18656-v1.0-hybrid Fragaria vesca gene18656-v1.0-hybrid I 0.693
Bostr.26833s0878 Boechera stricta Bostr.26833s0878 I 0.690
Cagra.4622s0007 Capsella grandiflora Cagra.4622s0007 I 0.690
Carubv10027280m.g Capsella rubella Carubv10027280m.g I 0.690
Bo12274s010 Brassica oleracea Bo12274s010 I 0.689
AMTR_s00027p00144540 Amborella trichopoda AMTR_s00027p00144540 I 0.686
POPTR_0017s04820 Populus trichocarpa POPTR_0017s04820 I 0.685
SapurV1A.2554s0010 Salix purpurea SapurV1A.2554s0010 I 0.685
SapurV1A.3101s0010 Salix purpurea SapurV1A.3101s0010 I 0.685
Bo2g042250 Brassica oleracea Bo2g042250 I 0.683
Bra022687 Brassica rapa Bra022687 I 0.683
Thhalv10014905m.g Eutrema salsugineum Thhalv10014905m.g I 0.678
GLYMA12G18720 Glycine max GLYMA12G18720 I 0.677
Eucgr.A01421 Eucalyptus grandis Eucgr.A01421 I 0.676
MTR_1g061660 Medicago truncatula MTR_1g061660 I 0.673
Aquca_009_01021 Aquilegia coerulea Aquca_009_01021 I 0.667
GRMZM2G034113 Zea mays GRMZM2G034113 I 0.666
GRMZM2G041462 Zea mays GRMZM2G041462 I 0.666
Sb02g030660 Sorghum bicolor Sb02g030660 I 0.666
Si030983m.g Setaria italica Si030983m.g I 0.666
Pavir.Ba01249 Panicum virgatum Pavir.Ba01249 I 0.666
Pavir.Bb02633 Panicum virgatum Pavir.Bb02633 I 0.666
BRADI4G35910 Brachypodium distachyon BRADI4G35910 I 0.665
PRUPE_ppa010647mg Prunus persica PRUPE_ppa010647mg I 0.661
Pm018314 Prunus mume Pm018314 I 0.661
Cla018641 Citrullus lanatus Cla018641 I 0.660
Cucsa.125070 Cucumis sativus Cucsa.125070 I 0.660
VIT_08s0007g04200 Vitis vinifera VIT_08s0007g04200 I 0.657
LjSGA_022706.2 Lotus japonicus LjSGA_022706.2 I 0.656
Gorai.012G055400 Gossypium raimondii Gorai.012G055400 I 0.654
Thhalv10017567m.g Eutrema salsugineum Thhalv10017567m.g I 0.642
Gorai.002G244000 Gossypium raimondii Gorai.002G244000 I 0.638
SapurV1A.0226s0110 Salix purpurea SapurV1A.0226s0110 I 0.638
Solyc06g053220.2 Solanum lycopersicum Solyc06g053220.2 I 0.637
PGSC0003DMG400002692 Solanum tuberosum PGSC0003DMG400002692 I 0.635
Solyc09g008810.2 Solanum lycopersicum Solyc09g008810.2 I 0.635
mgf022748m Mimulus guttatus mgf022748m I 0.635
Ciclev10012525m.g Citrus clementina Ciclev10012525m.g I 0.635
orange1.1g040769m.g Citrus sinensis orange1.1g040769m.g I 0.635
GLYMA10G07440 Glycine max GLYMA10G07440 I 0.634
GLYMA13G21330 Glycine max GLYMA13G21330 I 0.634
POPTR_0006s11890 Populus trichocarpa POPTR_0006s11890 I 0.634
PRUPE_ppa015952mg Prunus persica PRUPE_ppa015952mg I 0.634
TCM_022391 Theobroma cacao TCM_022391 I 0.634
Cla018017 Citrullus lanatus Cla018017 I 0.634
Pm026270 Prunus mume Pm026270 I 0.634
29815.m000499 Ricinus communis 29815.m000499 I 0.634
cassava14646.m1 Manihot esculenta cassava14646.m1 I 0.634
cassava34082.m1 Manihot esculenta cassava34082.m1 I 0.634
Cucsa.378700 Cucumis sativus Cucsa.378700 I 0.634
mgf019824m Mimulus guttatus mgf019824m I 0.634
evm.TU.supercontig_5.106 Carica papaya evm.TU.supercontig_5.106 I 0.634
gene30097-v1.0-hybrid Fragaria vesca gene30097-v1.0-hybrid I 0.634
Gorai.002G244200 Gossypium raimondii Gorai.002G244200 I 0.634
Gorai.009G409600 Gossypium raimondii Gorai.009G409600 I 0.634
Lus10008641.g Linum usitatissimum Lus10008641.g I 0.634
Lus10035583.g Linum usitatissimum Lus10035583.g I 0.634
MDP0000119544 Malus domestica MDP0000119544 I 0.634
MDP0000134241 Malus domestica MDP0000134241 I 0.634
MDP0000738604 Malus domestica MDP0000738604 I 0.634
PK15535.1 Cannabis sativa PK15535.1 I 0.634
PGSC0003DMG400005472 Solanum tuberosum PGSC0003DMG400005472 I 0.630
Ciclev10016895m.g Citrus clementina Ciclev10016895m.g I 0.628
MDP0000311522 Malus domestica MDP0000311522 I 0.628
Eucgr.A01575 Eucalyptus grandis Eucgr.A01575 I 0.627
PGSC0003DMG400018509 Solanum tuberosum PGSC0003DMG400018509 I 0.625
POPTR_0007s01370 Populus trichocarpa POPTR_0007s01370 I 0.625
Solyc03g082550.2 Solanum lycopersicum Solyc03g082550.2 I 0.625
ATHB-51 Arabidopsis thaliana AT5G03790 D 0.624
Bo2g005230 Brassica oleracea Bo2g005230 I 0.624
Bo3g002560 Brassica oleracea Bo3g002560 I 0.624
Bo9g181720 Brassica oleracea Bo9g181720 I 0.624
Bra009510 Brassica rapa Bra009510 I 0.624
Bra028820 Brassica rapa Bra028820 I 0.624
ATHB51 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000249 I 0.624
Bostr.2128s0071 Boechera stricta Bostr.2128s0071 I 0.624
Cagra.0154s0025 Capsella grandiflora Cagra.0154s0025 I 0.624
Cagra.0463s0004 Capsella grandiflora Cagra.0463s0004 I 0.624
Carubv10002440m.g Capsella rubella Carubv10002440m.g I 0.624
Carubv10003464m.g Capsella rubella Carubv10003464m.g I 0.624
Thhalv10014547m.g Eutrema salsugineum Thhalv10014547m.g I 0.624
Thhalv10015784m.g Eutrema salsugineum Thhalv10015784m.g I 0.624
Pavir.Hb01447 Panicum virgatum Pavir.Hb01447 I 0.623
ATHB-22 Arabidopsis thaliana AT2G36610 D 0.622
Bo4g034490 Brassica oleracea Bo4g034490 I 0.622
Bra005259 Brassica rapa Bra005259 I 0.622
Bostr.23794s0432 Boechera stricta Bostr.23794s0432 I 0.622
Cagra.0228s0052 Capsella grandiflora Cagra.0228s0052 I 0.622
Carubv10024148m.g Capsella rubella Carubv10024148m.g I 0.622
ATHB22 Arabidopsis lyrata Al_scaffold_0004_2163 I 0.616
Bra018155 Brassica rapa Bra018155 I 0.613
GLYMA03G34710 Glycine max GLYMA03G34710 I 0.611
evm.TU.supercontig_83.103 Carica papaya evm.TU.supercontig_83.103 N 0.608
30089.m001006 Ricinus communis 30089.m001006 I 0.604