PGSC0003DMG400021278 (Solanum tuberosum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 PGSC0003DMG400021278 T222195_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.686 0.649
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.686 0.649
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.681 0.614
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.681 0.614
ATHB-22
M02041_2.00 		Arabidopsis thaliana
NNATAATWWWNNN
NNNWWWATTATNN		 PBM
Weirauch et al.(2014)
pTH5883 		0.638 0.561
ATHB-51
M00867_2.00 		Arabidopsis thaliana
ATWATKNN
NNMATWAT		 PBM
Franco-Zorrilla et al.(2014)
ATHB51 		0.628 0.544
ATHB-51
M06927_2.00 		Arabidopsis thaliana
DNCAATAATTGAD
HTCAATTATTGNH		 Dap-seq
OMalley et al.(2016)
LMI1_col_a 		0.628 0.544
ATHB-51
M06928_2.00 		Arabidopsis thaliana
NDNCAATAATTGA
TCAATTATTGNHN		 Dap-seq
OMalley et al.(2016)
LMI1_colamp_a 		0.628 0.544
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400054818 Homeodomain 18 74

Links

Other Homeodomain family TFs
Other Solanum tuberosum TFs

169 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PGSC0003DMG402012439 Solanum tuberosum PGSC0003DMG402012439 I 0.776
Solyc07g062790.1 Solanum lycopersicum Solyc07g062790.1 I 0.775
TCM_031644 Theobroma cacao TCM_031644 I 0.754
mgf013301m Mimulus guttatus mgf013301m I 0.736
MDP0000146339 Malus domestica MDP0000146339 I 0.733
evm.TU.supercontig_80.1 Carica papaya evm.TU.supercontig_80.1 I 0.730
gene24976-v1.0-hybrid Fragaria vesca gene24976-v1.0-hybrid I 0.730
PRUPE_ppa017711mg Prunus persica PRUPE_ppa017711mg I 0.729
Pm011328 Prunus mume Pm011328 I 0.729
VIT_19s0014g02110 Vitis vinifera VIT_19s0014g02110 I 0.726
GLYMA06G35050 Glycine max GLYMA06G35050 I 0.724
VIT_10s0003g00380 Vitis vinifera VIT_10s0003g00380 I 0.723
Gorai.002G067100 Gossypium raimondii Gorai.002G067100 I 0.721
MDP0000909160 Malus domestica MDP0000909160 I 0.720
POPTR_0001s40540 Populus trichocarpa POPTR_0001s40540 I 0.718
POPTR_0011s11510 Populus trichocarpa POPTR_0011s11510 I 0.718
SapurV1A.0207s0080 Salix purpurea SapurV1A.0207s0080 I 0.718
Lus10003492.g Linum usitatissimum Lus10003492.g I 0.713
Lus10013103.g Linum usitatissimum Lus10013103.g I 0.713
Gorai.001G256300 Gossypium raimondii Gorai.001G256300 I 0.708
PGSC0003DMG400031777 Solanum tuberosum PGSC0003DMG400031777 I 0.700
Ciclev10009522m.g Citrus clementina Ciclev10009522m.g I 0.695
orange1.1g035661m.g Citrus sinensis orange1.1g035661m.g I 0.695
VIT_16s0098g01170 Vitis vinifera VIT_16s0098g01170 I 0.690
AMTR_s00027p00144540 Amborella trichopoda AMTR_s00027p00144540 I 0.689
VIT_18s0001g06430 Vitis vinifera VIT_18s0001g06430 I 0.689
GLYMA09G37410 Glycine max GLYMA09G37410 I 0.687
ATHB-20 Arabidopsis thaliana AT3G01220 D 0.686
Bo1g158730 Brassica oleracea Bo1g158730 I 0.686
Bra039135 Brassica rapa Bra039135 I 0.686
GLYMA19G02490 Glycine max GLYMA19G02490 I 0.686
POPTR_0017s11800 Populus trichocarpa POPTR_0017s11800 I 0.686
ATHB20 Arabidopsis lyrata scaffold_300109.1 I 0.686
TCM_018470 Theobroma cacao TCM_018470 I 0.686
Cla010510 Citrullus lanatus Cla010510 I 0.686
29822.m003500 Ricinus communis 29822.m003500 I 0.686
cassava13234.valid.m1 Manihot esculenta cassava13234.valid.m1 I 0.686
Bostr.1460s0094 Boechera stricta Bostr.1460s0094 I 0.686
Cagra.1390s0021 Capsella grandiflora Cagra.1390s0021 I 0.686
Carubv10014214m.g Capsella rubella Carubv10014214m.g I 0.686
Ciclev10012352m.g Citrus clementina Ciclev10012352m.g I 0.686
evm.TU.supercontig_14.18 Carica papaya evm.TU.supercontig_14.18 I 0.686
Gorai.006G022100 Gossypium raimondii Gorai.006G022100 I 0.686
orange1.1g041877m.g Citrus sinensis orange1.1g041877m.g I 0.686
chr2.LjT39I02.10.nc Lotus japonicus chr2.LjT39I02.10.nc I 0.686
GSMUA_Achr6G36450_001 Musa acuminata GSMUA_Achr6G36450_001 I 0.685
HAT7 Arabidopsis thaliana AT5G15150 I 0.684
Bo2g012410 Brassica oleracea Bo2g012410 I 0.684
Bo3g010120 Brassica oleracea Bo3g010120 I 0.684
Bo9g165360 Brassica oleracea Bo9g165360 I 0.684
Bra006285 Brassica rapa Bra006285 I 0.684
Bra008717 Brassica rapa Bra008717 I 0.684
Bra023506 Brassica rapa Bra023506 I 0.684
ATHB-3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001192 I 0.684
GSMUA_Achr10G18860_001 Musa acuminata GSMUA_Achr10G18860_001 I 0.684
Bostr.2902s0249 Boechera stricta Bostr.2902s0249 I 0.684
Cagra.1036s0042 Capsella grandiflora Cagra.1036s0042 I 0.684
Carubv10001498m.g Capsella rubella Carubv10001498m.g I 0.684
Thhalv10014157m.g Eutrema salsugineum Thhalv10014157m.g I 0.684
GLYMA18G49290 Glycine max GLYMA18G49290 I 0.682
MTR_6g011610 Medicago truncatula MTR_6g011610 I 0.681
PRUPE_ppa020465mg Prunus persica PRUPE_ppa020465mg I 0.681
Ca_10527 Cicer arietinum Ca_10527 I 0.681
Pm015861 Prunus mume Pm015861 I 0.681
cassava39955.m1 Manihot esculenta cassava39955.m1 I 0.681
Cucsa.158420 Cucumis sativus Cucsa.158420 I 0.681
Eucgr.I01934 Eucalyptus grandis Eucgr.I01934 I 0.681
gene28322-v1.0-hybrid Fragaria vesca gene28322-v1.0-hybrid I 0.681
MDP0000124827 Malus domestica MDP0000124827 I 0.681
MDP0000737128 Malus domestica MDP0000737128 I 0.681
SapurV1A.1260s0050 Salix purpurea SapurV1A.1260s0050 I 0.681
SapurV1A.2065s0030 Salix purpurea SapurV1A.2065s0030 I 0.681
Thhalv10021334m.g Eutrema salsugineum Thhalv10021334m.g I 0.681
PK20392.1 Cannabis sativa PK20392.1 D 0.681
GSMUA_Achr4G00550_001 Musa acuminata GSMUA_Achr4G00550_001 I 0.680
GSMUA_Achr6G10660_001 Musa acuminata GSMUA_Achr6G10660_001 I 0.678
POPTR_0017s04820 Populus trichocarpa POPTR_0017s04820 I 0.676
SapurV1A.2554s0010 Salix purpurea SapurV1A.2554s0010 I 0.676
SapurV1A.3101s0010 Salix purpurea SapurV1A.3101s0010 I 0.676
Eucgr.I02255 Eucalyptus grandis Eucgr.I02255 I 0.671
mgf025174m Mimulus guttatus mgf025174m I 0.667
Carubv10003464m.g Capsella rubella Carubv10003464m.g I 0.659
Gorai.002G244000 Gossypium raimondii Gorai.002G244000 I 0.659
GLYMA13G05270 Glycine max GLYMA13G05270 I 0.656
Solyc02g077590.1 Solanum lycopersicum Solyc02g077590.1 I 0.655
29983.m003123 Ricinus communis 29983.m003123 I 0.654
GLYMA10G07440 Glycine max GLYMA10G07440 I 0.650
GLYMA13G21330 Glycine max GLYMA13G21330 I 0.650
Bo12274s010 Brassica oleracea Bo12274s010 I 0.649
Thhalv10014905m.g Eutrema salsugineum Thhalv10014905m.g I 0.647
BRADI4G35910 Brachypodium distachyon BRADI4G35910 I 0.646
GRMZM2G034113 Zea mays GRMZM2G034113 I 0.646
GRMZM2G041462 Zea mays GRMZM2G041462 I 0.646
Sb02g030660 Sorghum bicolor Sb02g030660 I 0.646
Si030983m.g Setaria italica Si030983m.g I 0.646
Pavir.Ba01249 Panicum virgatum Pavir.Ba01249 I 0.646
Pavir.Bb02633 Panicum virgatum Pavir.Bb02633 I 0.646
MTR_1g061660 Medicago truncatula MTR_1g061660 I 0.645
ATHB-52 Arabidopsis thaliana AT5G53980 I 0.643
ATHB52 Arabidopsis lyrata fgenesh2_kg.8__1293__AT5G53980.1 I 0.643
Bostr.26833s0878 Boechera stricta Bostr.26833s0878 I 0.643
Cagra.4622s0007 Capsella grandiflora Cagra.4622s0007 I 0.643
Carubv10027280m.g Capsella rubella Carubv10027280m.g I 0.643
Bo2g042250 Brassica oleracea Bo2g042250 I 0.642
Bra022687 Brassica rapa Bra022687 I 0.642
ATHB-22 Arabidopsis thaliana AT2G36610 D 0.638
Bo4g034490 Brassica oleracea Bo4g034490 I 0.638
Bra005259 Brassica rapa Bra005259 I 0.638
PRUPE_ppa010647mg Prunus persica PRUPE_ppa010647mg I 0.638
Pm018314 Prunus mume Pm018314 I 0.638
Bostr.23794s0432 Boechera stricta Bostr.23794s0432 I 0.638
Cagra.0228s0052 Capsella grandiflora Cagra.0228s0052 I 0.638
Carubv10024148m.g Capsella rubella Carubv10024148m.g I 0.638
gene18656-v1.0-hybrid Fragaria vesca gene18656-v1.0-hybrid I 0.638
Thhalv10017567m.g Eutrema salsugineum Thhalv10017567m.g I 0.638
POPTR_0007s01370 Populus trichocarpa POPTR_0007s01370 I 0.637
Eucgr.A01421 Eucalyptus grandis Eucgr.A01421 I 0.634
ATHB22 Arabidopsis lyrata Al_scaffold_0004_2163 I 0.632
Cla018641 Citrullus lanatus Cla018641 I 0.631
Cucsa.125070 Cucumis sativus Cucsa.125070 I 0.631
PGSC0003DMG400002692 Solanum tuberosum PGSC0003DMG400002692 I 0.629
Solyc09g008810.2 Solanum lycopersicum Solyc09g008810.2 I 0.629
VIT_08s0007g04200 Vitis vinifera VIT_08s0007g04200 I 0.629
mgf022748m Mimulus guttatus mgf022748m I 0.629
Ciclev10012525m.g Citrus clementina Ciclev10012525m.g I 0.629
orange1.1g040769m.g Citrus sinensis orange1.1g040769m.g I 0.629
ATHB-51 Arabidopsis thaliana AT5G03790 D 0.628
Bo3g002560 Brassica oleracea Bo3g002560 I 0.628
Bo9g181720 Brassica oleracea Bo9g181720 I 0.628
Bra009510 Brassica rapa Bra009510 I 0.628
ATHB51 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000249 I 0.628
GLYMA12G18720 Glycine max GLYMA12G18720 I 0.628
POPTR_0006s11890 Populus trichocarpa POPTR_0006s11890 I 0.628
PRUPE_ppa015952mg Prunus persica PRUPE_ppa015952mg I 0.628
TCM_022391 Theobroma cacao TCM_022391 I 0.628
Cla018017 Citrullus lanatus Cla018017 I 0.628
Pm026270 Prunus mume Pm026270 I 0.628
29815.m000499 Ricinus communis 29815.m000499 I 0.628
cassava14646.m1 Manihot esculenta cassava14646.m1 I 0.628
cassava34082.m1 Manihot esculenta cassava34082.m1 I 0.628
Cucsa.378700 Cucumis sativus Cucsa.378700 I 0.628
mgf019824m Mimulus guttatus mgf019824m I 0.628
Bostr.2128s0071 Boechera stricta Bostr.2128s0071 I 0.628
Cagra.0154s0025 Capsella grandiflora Cagra.0154s0025 I 0.628
Cagra.0463s0004 Capsella grandiflora Cagra.0463s0004 I 0.628
Carubv10002440m.g Capsella rubella Carubv10002440m.g I 0.628
evm.TU.supercontig_5.106 Carica papaya evm.TU.supercontig_5.106 I 0.628
Gorai.002G244200 Gossypium raimondii Gorai.002G244200 I 0.628
Gorai.009G409600 Gossypium raimondii Gorai.009G409600 I 0.628
Lus10008641.g Linum usitatissimum Lus10008641.g I 0.628
Lus10035583.g Linum usitatissimum Lus10035583.g I 0.628
MDP0000119544 Malus domestica MDP0000119544 I 0.628
MDP0000134241 Malus domestica MDP0000134241 I 0.628
MDP0000738604 Malus domestica MDP0000738604 I 0.628
SapurV1A.0226s0110 Salix purpurea SapurV1A.0226s0110 I 0.628
Thhalv10014547m.g Eutrema salsugineum Thhalv10014547m.g I 0.628
LjSGA_022706.2 Lotus japonicus LjSGA_022706.2 I 0.628
Aquca_009_01021 Aquilegia coerulea Aquca_009_01021 I 0.627
Thhalv10015784m.g Eutrema salsugineum Thhalv10015784m.g I 0.617
Bo2g005230 Brassica oleracea Bo2g005230 I 0.616
Bra028820 Brassica rapa Bra028820 I 0.616
gene30097-v1.0-hybrid Fragaria vesca gene30097-v1.0-hybrid I 0.616
PK15535.1 Cannabis sativa PK15535.1 I 0.616
PGSC0003DMG400018509 Solanum tuberosum PGSC0003DMG400018509 I 0.610
Solyc03g082550.2 Solanum lycopersicum Solyc03g082550.2 I 0.610
Gorai.012G055400 Gossypium raimondii Gorai.012G055400 I 0.605
MDP0000311522 Malus domestica MDP0000311522 I 0.605
Pavir.Hb01447 Panicum virgatum Pavir.Hb01447 I 0.603
Eucgr.A01575 Eucalyptus grandis Eucgr.A01575 I 0.599