Bra017720 (Brassica rapa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Bra017720 T205110_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WOX13
M02049_2.00 		Arabidopsis thaliana
YTGATTGA
TCAATCAR		 PBM
Weirauch et al.(2014)
pTH6461 		0.833 0.947
WOX13
M00866_2.00 		Arabidopsis thaliana
NNTGATTGAN
NTCAATCANN		 PBM
Franco-Zorrilla et al.(2014)
WOX13 		0.833 0.947
GRMZM2G038252
M02137_2.00 		Zea mays
HTRATTGV
BCAATYAD		 PBM
Weirauch et al.(2014)
pTH6141 		0.820 0.807
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra017720.1-P Homeodomain 91 152

Links

Other Homeodomain family TFs
Other Brassica rapa TFs

343 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Traes_5BL_CC18CAD72 Triticum aestivum Traes_5BL_CC18CAD72 D 0.000
BGIOSGA000598 Oryza indica BGIOSGA000598 I 0.000
BGIOSGA034713 Oryza indica BGIOSGA034713 I 0.000
BGIOSGA036918 Oryza indica BGIOSGA036918 I 0.000
BGIOSGA036920 Oryza indica BGIOSGA036920 I 0.000
Bo1g152220 Brassica oleracea Bo1g152220 I 0.000
Bra040152 Brassica rapa Bra040152 I 0.000
BRADI1G24390 Brachypodium distachyon BRADI1G24390 I 0.000
F775_14365 Aegilops tauschii F775_14365 I 0.000
F775_16000 Aegilops tauschii F775_16000 I 0.000
F775_26965 Aegilops tauschii F775_26965 I 0.000
GLYMA02G07700 Glycine max GLYMA02G07700 I 0.000
GLYMA03G33690 Glycine max GLYMA03G33690 I 0.000
GLYMA05G15533 Glycine max GLYMA05G15533 I 0.000
GLYMA12G21272 Glycine max GLYMA12G21272 I 0.000
GLYMA12G29360 Glycine max GLYMA12G29360 I 0.000
GLYMA13G40251 Glycine max GLYMA13G40251 I 0.000
GLYMA16G04740 Glycine max GLYMA16G04740 I 0.000
GLYMA16G26740 Glycine max GLYMA16G26740 I 0.000
GLYMA19G28476 Glycine max GLYMA19G28476 I 0.000
GLYMA19G36421 Glycine max GLYMA19G36421 I 0.000
GRMZM2G068973 Zea mays GRMZM2G068973 I 0.000
GSMUA_Achr10G29200_001 Musa acuminata GSMUA_Achr10G29200_001 I 0.000
GSMUA_AchrUn_randomG17360_001 Musa acuminata GSMUA_AchrUn_randomG17360_001 I 0.000
LPERR01G30200 Leersia perrieri LPERR01G30200 I 0.000
MLOC_4747 Hordeum vulgare MLOC_4747 I 0.000
MLOC_8116 Hordeum vulgare MLOC_8116 I 0.000
MTR_2g093810 Medicago truncatula MTR_2g093810 I 0.000
MTR_7g100990 Medicago truncatula MTR_7g100990 I 0.000
OB01G43840 Oryza brachyantha OB01G43840 I 0.000
OB11G11210 Oryza brachyantha OB11G11210 I 0.000
OB12G11500 Oryza brachyantha OB12G11500 I 0.000
OBART01G35010 Oryza barthii OBART01G35010 I 0.000
OBART11G01590 Oryza barthii OBART11G01590 I 0.000
OBART12G01290 Oryza barthii OBART12G01290 I 0.000
OGLUM01G39020 Oryza glumaepatula OGLUM01G39020 I 0.000
OGLUM11G01310 Oryza glumaepatula OGLUM11G01310 I 0.000
OGLUM12G01870 Oryza glumaepatula OGLUM12G01870 I 0.000
OLONG_020632 Oryza longistaminata OLONG_020632 I 0.000
OLONG_026749 Oryza longistaminata OLONG_026749 I 0.000
OMERI01G32290 Oryza meridionalis OMERI01G32290 I 0.000
OMERI12G00480 Oryza meridionalis OMERI12G00480 I 0.000
ONIVA01G39980 Oryza nivara ONIVA01G39980 I 0.000
ONIVA11G01630 Oryza nivara ONIVA11G01630 I 0.000
OPUNC01G34000 Oryza punctata OPUNC01G34000 I 0.000
OPUNC11G01330 Oryza punctata OPUNC11G01330 I 0.000
OPUNC12G01370 Oryza punctata OPUNC12G01370 I 0.000
ORGLA01G0288400 Oryza glaberrima ORGLA01G0288400 I 0.000
ORGLA12G0011400 Oryza glaberrima ORGLA12G0011400 I 0.000
ORUFI01G38320 Oryza rufipogon ORUFI01G38320 I 0.000
NAC68 Oryza sativa OS01G0816100 I 0.000
OS11G0126900 Oryza sativa OS11G0126900 I 0.000
OS12G0123700 Oryza sativa OS12G0123700 I 0.000
PGSC0003DMG400019293 Solanum tuberosum PGSC0003DMG400019293 I 0.000
POPTR_0011s04650 Populus trichocarpa POPTR_0011s04650 I 0.000
POPTR_0011s12400 Populus trichocarpa POPTR_0011s12400 I 0.000
PRUPE_ppa007445mg Prunus persica PRUPE_ppa007445mg I 0.000
PRUPE_ppa007577mg Prunus persica PRUPE_ppa007577mg I 0.000
Sb03g037940 Sorghum bicolor Sb03g037940 I 0.000
Sb05g001580 Sorghum bicolor Sb05g001580 I 0.000
Sb08g001940 Sorghum bicolor Sb08g001940 I 0.000
Si010410m.g Setaria italica Si010410m.g I 0.000
Si026530m.g Setaria italica Si026530m.g I 0.000
Solyc07g063420.2 Solanum lycopersicum Solyc07g063420.2 I 0.000
TCM_041055 Theobroma cacao TCM_041055 I 0.000
Traes_2AS_09457EDD8 Triticum aestivum Traes_2AS_09457EDD8 I 0.000
Traes_2BS_58AA829F4 Triticum aestivum Traes_2BS_58AA829F4 I 0.000
Traes_2DS_5DF921ABB Triticum aestivum Traes_2DS_5DF921ABB I 0.000
TRAES3BF108700110CFD_g Triticum aestivum TRAES3BF108700110CFD_g I 0.000
Traes_6AS_6F89CC969 Triticum aestivum Traes_6AS_6F89CC969 I 0.000
Traes_6DS_90A627C3F Triticum aestivum Traes_6DS_90A627C3F I 0.000
VIT_06s0004g03080 Vitis vinifera VIT_06s0004g03080 I 0.000
anac047 Vitis vinifera VIT_08s0007g07670 I 0.000
VIT_08s0040g02110 Vitis vinifera VIT_08s0040g02110 I 0.000
Ca_12031 Cicer arietinum Ca_12031 I 0.000
Pm011604 Prunus mume Pm011604 I 0.000
Pm025312 Prunus mume Pm025312 I 0.000
cassava22631.valid.m1 Manihot esculenta cassava22631.valid.m1 I 0.000
cassava35701.valid.m1 Manihot esculenta cassava35701.valid.m1 I 0.000
cassava3577.m1 Manihot esculenta cassava3577.m1 I 0.000
e_gw1.259.28.1 Physcomitrella patens e_gw1.259.28.1 I 0.000
mgf007362m Mimulus guttatus mgf007362m I 0.000
mgf016382m Mimulus guttatus mgf016382m I 0.000
Aquca_014_00941 Aquilegia coerulea Aquca_014_00941 I 0.000
Ciclev10020717m.g Citrus clementina Ciclev10020717m.g I 0.000
Eucgr.A02070 Eucalyptus grandis Eucgr.A02070 I 0.000
Eucgr.D00665 Eucalyptus grandis Eucgr.D00665 I 0.000
Gorai.013G191800 Gossypium raimondii Gorai.013G191800 I 0.000
Lus10006547.g Linum usitatissimum Lus10006547.g I 0.000
Lus10007410.g Linum usitatissimum Lus10007410.g I 0.000
Lus10036117.g Linum usitatissimum Lus10036117.g I 0.000
MDP0000180683 Malus domestica MDP0000180683 I 0.000
MDP0000404409 Malus domestica MDP0000404409 I 0.000
orange1.1g017665m.g Citrus sinensis orange1.1g017665m.g I 0.000
Pavir.Ea03233 Panicum virgatum Pavir.Ea03233 I 0.000
Pavir.Eb03542 Panicum virgatum Pavir.Eb03542 I 0.000
Pavir.J23516 Panicum virgatum Pavir.J23516 I 0.000
SapurV1A.0127s0020 Salix purpurea SapurV1A.0127s0020 I 0.000
SapurV1A.1058s0080 Salix purpurea SapurV1A.1058s0080 I 0.000
SapurV1A.2115s0010 Salix purpurea SapurV1A.2115s0010 I 0.000
PK08629.1 Cannabis sativa PK08629.1 I 0.000
chr1.CM0033.600.nc Lotus japonicus chr1.CM0033.600.nc I 0.000
chr3.CM0111.130.nd Lotus japonicus chr3.CM0111.130.nd I 0.000
LjSGA_036741.1 Lotus japonicus LjSGA_036741.1 I 0.000
GRMZM2G312201 Zea mays GRMZM2G312201 N 0.000
MTR_7g085220 Medicago truncatula MTR_7g085220 N 0.000
POPTR_0006s13140 Populus trichocarpa POPTR_0006s13140 N 0.000
Si002386m.g Setaria italica Si002386m.g N 0.000
Ca_08257 Cicer arietinum Ca_08257 N 0.000
Eucgr.K01471 Eucalyptus grandis Eucgr.K01471 N 0.000
Lus10015076.g Linum usitatissimum Lus10015076.g N 0.000
Lus10023179.g Linum usitatissimum Lus10023179.g N 0.000
orange1.1g042614m.g Citrus sinensis orange1.1g042614m.g N 0.000
PK06287.1 Cannabis sativa PK06287.1 N 0.000