CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra038757
(
Brassica rapa
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
Bra038757
T205187_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ATML1
M02048_2.00
Arabidopsis thaliana
NNHNRHYRNN
NNYRDYNDNN
PBM
Weirauch et al.(2014)
pTH8203
0.632
0.965
ATML1
M10626_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ML1_01
0.632
0.965
PDF2
M06921_2.00
Arabidopsis thaliana
WNVGAATATTCYHTN
NADRGAATATTCBNW
Dap-seq
OMalley et al.(2016)
PDF2_col
0.622
0.965
PDF2
M10625_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PDF2_01
0.622
0.965
PK24181.1
M01252_2.00
Cannabis sativa
NNNNNNNHDH
DHDNNNNNNN
PBM
Lambert et al.(2019)
pTH11300
0.608
0.772
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra038757.1-P
Homeodomain
63
119
KKRYHRHTQRQIQELESFFKECPHPDDKQRKELSRELNLEPLQVKFWFHNKRTQMKA
Links
Other
Homeodomain
family TFs
Other
Brassica rapa
TFs
243 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy