CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Bra038757
(
Brassica rapa
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
Bra038757
T205187_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ATML1
M02048_2.00
Arabidopsis thaliana
NNHNRHYRNN
NNYRDYNDNN
PBM
Weirauch et al.(2014)
pTH8203
0.632
0.965
ATML1
M10626_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ML1_01
0.632
0.965
PDF2
M06921_2.00
Arabidopsis thaliana
WNVGAATATTCYHTN
NADRGAATATTCBNW
Dap-seq
OMalley et al.(2016)
PDF2_col
0.622
0.965
PDF2
M10625_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PDF2_01
0.622
0.965
PK24181.1
M01252_2.00
Cannabis sativa
NNNNNNNHDH
DHDNNNNNNN
PBM
Lambert et al.(2019)
pTH11300
0.608
0.772
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra038757.1-P
Homeodomain
63
119
KKRYHRHTQRQIQELESFFKECPHPDDKQRKELSRELNLEPLQVKFWFHNKRTQMKA
Links
Other
Homeodomain
family TFs
Other
Brassica rapa
TFs
243 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cagra.3519s0026
Capsella grandiflora
Cagra.3519s0026
I
0.633
Bo7g107550
Brassica oleracea
Bo7g107550
I
0.633
Bra013556
Brassica rapa
Bra013556
I
0.633
Carubv10006895m.g
Capsella rubella
Carubv10006895m.g
I
0.633
Bra020872
Brassica rapa
Bra020872
I
0.633
Bo1g025510
Brassica oleracea
Bo1g025510
I
0.633
Bo3g163910
Brassica oleracea
Bo3g163910
I
0.633
TCM_030175
Theobroma cacao
TCM_030175
I
0.632
Lus10020059.g
Linum usitatissimum
Lus10020059.g
I
0.632
POPTR_0004s01980
Populus trichocarpa
POPTR_0004s01980
I
0.632
Lus10006765.g
Linum usitatissimum
Lus10006765.g
I
0.632
Thhalv10024488m.g
Eutrema salsugineum
Thhalv10024488m.g
I
0.632
OLONG_026649
Oryza longistaminata
OLONG_026649
I
0.632
Bostr.10689s0126
Boechera stricta
Bostr.10689s0126
I
0.632
29842.m003633
Ricinus communis
29842.m003633
I
0.632
VIT_10s0116g00680
Vitis vinifera
VIT_10s0116g00680
I
0.632
SapurV1A.0722s0230
Salix purpurea
SapurV1A.0722s0230
I
0.632
cassava26453.m1
Manihot esculenta
cassava26453.m1
I
0.632
evm.TU.supercontig_198.17
Carica papaya
evm.TU.supercontig_198.17
I
0.632
ATML1
Arabidopsis thaliana
AT4G21750
D
0.632
POPTR_0011s00520
Populus trichocarpa
POPTR_0011s00520
I
0.631
Lus10018360.g
Linum usitatissimum
Lus10018360.g
I
0.630
Gorai.010G177800
Gossypium raimondii
Gorai.010G177800
I
0.630
Lus10007650.g
Linum usitatissimum
Lus10007650.g
I
0.630
Bostr.2983s0029
Boechera stricta
Bostr.2983s0029
I
0.622
Carubv10000300m.g
Capsella rubella
Carubv10000300m.g
I
0.622
Cagra.5070s0005
Capsella grandiflora
Cagra.5070s0005
I
0.622
PDF2
Arabidopsis thaliana
AT4G04890
D
0.622
Bra000807
Brassica rapa
Bra000807
I
0.620
Bo3g048340
Brassica oleracea
Bo3g048340
I
0.620
Bra029527
Brassica rapa
Bra029527
I
0.620
Bo9g077670
Brassica oleracea
Bo9g077670
I
0.620
Thhalv10028459m.g
Eutrema salsugineum
Thhalv10028459m.g
I
0.620
PGSC0003DMG400024068
Solanum tuberosum
PGSC0003DMG400024068
I
0.618
POPTR_0003s09470
Populus trichocarpa
POPTR_0003s09470
I
0.617
PRUPE_ppa014792mg
Prunus persica
PRUPE_ppa014792mg
I
0.617
TCM_016582
Theobroma cacao
TCM_016582
I
0.617
Sb01g028160
Sorghum bicolor
Sb01g028160
I
0.617
POPTR_0001s02030
Populus trichocarpa
POPTR_0001s02030
I
0.617
Thhalv10000776m.g
Eutrema salsugineum
Thhalv10000776m.g
I
0.617
ORUFI10G20730
Oryza rufipogon
ORUFI10G20730
I
0.617
ONIVA10G22060
Oryza nivara
ONIVA10G22060
I
0.617
OMERI10G15290
Oryza meridionalis
OMERI10G15290
I
0.617
OLONG_018774
Oryza longistaminata
OLONG_018774
I
0.617
OPUNC10G17890
Oryza punctata
OPUNC10G17890
I
0.617
OPUNC10G17920
Oryza punctata
OPUNC10G17920
I
0.617
SapurV1A.0063s0030
Salix purpurea
SapurV1A.0063s0030
I
0.617
ORGLA10G0146400
Oryza glaberrima
ORGLA10G0146400
I
0.617
ROC3
Oryza sativa
OS10G0575600
I
0.617
SapurV1A.0051s0090
Salix purpurea
SapurV1A.0051s0090
I
0.617
OGLUM10G19540
Oryza glumaepatula
OGLUM10G19540
I
0.617
Cagra.0751s0009
Capsella grandiflora
Cagra.0751s0009
I
0.617
MDP0000123097
Malus domestica
MDP0000123097
I
0.617
Gorai.003G184900
Gossypium raimondii
Gorai.003G184900
I
0.617
Carubv10028088m.g
Capsella rubella
Carubv10028088m.g
I
0.617
Eucgr.D02223
Eucalyptus grandis
Eucgr.D02223
I
0.617
Ciclev10003996m.g
Citrus clementina
Ciclev10003996m.g
I
0.617
Bostr.28243s0044
Boechera stricta
Bostr.28243s0044
I
0.617
Pavir.Ib03079
Panicum virgatum
Pavir.Ib03079
I
0.617
Pm023161
Prunus mume
Pm023161
I
0.617
Cla016492
Citrullus lanatus
Cla016492
I
0.617
VIT_02s0012g02030
Vitis vinifera
VIT_02s0012g02030
I
0.617
Pavir.J05371
Panicum virgatum
Pavir.J05371
I
0.617
cassava44056.valid.m1
Manihot esculenta
cassava44056.valid.m1
I
0.617
mgf002757m
Mimulus guttatus
mgf002757m
I
0.617
Cucsa.312880
Cucumis sativus
Cucsa.312880
I
0.617
TRIUR3_19363
Triticum urartu
TRIUR3_19363
I
0.617
Si034202m.g
Setaria italica
Si034202m.g
I
0.617
GLYMA01G01850
Glycine max
GLYMA01G01850
I
0.617
MLOC_52077
Hordeum vulgare
MLOC_52077
I
0.617
F775_15827
Aegilops tauschii
F775_15827
I
0.617
Bra017519
Brassica rapa
Bra017519
I
0.617
GRMZM2G123140
Zea mays
GRMZM2G123140
I
0.617
Bo9g066790
Brassica oleracea
Bo9g066790
I
0.617
OB10G26620
Oryza brachyantha
OB10G26620
I
0.617
BGIOSGA031343
Oryza indica
BGIOSGA031343
I
0.617
BRADI3G34410
Brachypodium distachyon
BRADI3G34410
I
0.617
GLYMA09G34061
Glycine max
GLYMA09G34061
I
0.617
LPERR10G15330
Leersia perrieri
LPERR10G15330
I
0.617
HDG5
Arabidopsis thaliana
AT5G46880
I
0.617
OBART10G19440
Oryza barthii
OBART10G19440
I
0.617
Gorai.003G185000
Gossypium raimondii
Gorai.003G185000
I
0.613
Bo01466s010
Brassica oleracea
Bo01466s010
I
0.613
Bra024984
Brassica rapa
Bra024984
I
0.612
Cucsa.148430
Cucumis sativus
Cucsa.148430
I
0.611
HDG2
Arabidopsis thaliana
AT1G05230
I
0.611
Cla007796
Citrullus lanatus
Cla007796
I
0.611
MDP0000318514
Malus domestica
MDP0000318514
I
0.610
Lus10039667.g
Linum usitatissimum
Lus10039667.g
I
0.610
Ca_07131
Cicer arietinum
Ca_07131
I
0.610
GRMZM2G130442
Zea mays
GRMZM2G130442
I
0.610
Traes_2AL_48B239DD6
Triticum aestivum
Traes_2AL_48B239DD6
I
0.610
Pavir.Fb00210
Panicum virgatum
Pavir.Fb00210
I
0.610
Pavir.Gb00438
Panicum virgatum
Pavir.Gb00438
I
0.610
Bo5g005350
Brassica oleracea
Bo5g005350
I
0.610
Traes_2BL_1F5DBD5D5
Triticum aestivum
Traes_2BL_1F5DBD5D5
I
0.610
Traes_2DL_95721ADDA
Triticum aestivum
Traes_2DL_95721ADDA
I
0.610
HDG2
Vitis vinifera
VIT_12s0059g02310
I
0.610
orange1.1g004294m.g
Citrus sinensis
orange1.1g004294m.g
I
0.610
Cla010659
Citrullus lanatus
Cla010659
I
0.610
MDP0000389745
Malus domestica
MDP0000389745
I
0.610
Pm015192
Prunus mume
Pm015192
I
0.610
Bra032478
Brassica rapa
Bra032478
I
0.610
GLYMA12G32050
Glycine max
GLYMA12G32050
I
0.610
GLYMA13G38430
Glycine max
GLYMA13G38430
I
0.610
evm.TU.supercontig_8.223
Carica papaya
evm.TU.supercontig_8.223
I
0.610
Ciclev10014373m.g
Citrus clementina
Ciclev10014373m.g
I
0.610
BRADI3G15327
Brachypodium distachyon
BRADI3G15327
I
0.610
Bostr.25219s0446
Boechera stricta
Bostr.25219s0446
I
0.610
GLYMA12G10710
Glycine max
GLYMA12G10710
I
0.610
Aquca_047_00083
Aquilegia coerulea
Aquca_047_00083
I
0.610
Cucsa.072780
Cucumis sativus
Cucsa.072780
I
0.610
OGLUM04G26010
Oryza glumaepatula
OGLUM04G26010
I
0.610
Bra015401
Brassica rapa
Bra015401
I
0.610
Pavir.J09537
Panicum virgatum
Pavir.J09537
I
0.610
Bo8g115250
Brassica oleracea
Bo8g115250
I
0.610
Lus10027175.g
Linum usitatissimum
Lus10027175.g
I
0.610
29600.m000538
Ricinus communis
29600.m000538
I
0.610
GRMZM2G004957
Zea mays
GRMZM2G004957
I
0.610
GLYMA06G46000
Glycine max
GLYMA06G46000
I
0.610
cassava12566.valid.m1
Manihot esculenta
cassava12566.valid.m1
I
0.610
Cagra.1671s0144
Capsella grandiflora
Cagra.1671s0144
I
0.610
GRMZM2G122897
Zea mays
GRMZM2G122897
I
0.610
Si013279m.g
Setaria italica
Si013279m.g
I
0.610
ORGLA08G0016400
Oryza glaberrima
ORGLA08G0016400
I
0.610
ORGLA04G0231200
Oryza glaberrima
ORGLA04G0231200
I
0.610
OB04G32930
Oryza brachyantha
OB04G32930
I
0.610
OB08G12470
Oryza brachyantha
OB08G12470
I
0.610
ORGLA08G0042800
Oryza glaberrima
ORGLA08G0042800
I
0.610
LjSGA_029418.1
Lotus japonicus
LjSGA_029418.1
I
0.610
OS08G0136100
Oryza sativa
OS08G0136100
I
0.610
LjSGA_004176.2
Lotus japonicus
LjSGA_004176.2
I
0.610
ORUFI08G02510
Oryza rufipogon
ORUFI08G02510
I
0.610
ORUFI04G27800
Oryza rufipogon
ORUFI04G27800
I
0.610
OPUNC08G02090
Oryza punctata
OPUNC08G02090
I
0.610
OPUNC04G23630
Oryza punctata
OPUNC04G23630
I
0.610
OLONG_020222
Oryza longistaminata
OLONG_020222
I
0.610
OBART08G02270
Oryza barthii
OBART08G02270
I
0.610
OLONG_001685
Oryza longistaminata
OLONG_001685
I
0.610
OGLUM08G02240
Oryza glumaepatula
OGLUM08G02240
I
0.610
OBART04G26630
Oryza barthii
OBART04G26630
I
0.610
OMERI08G02310
Oryza meridionalis
OMERI08G02310
I
0.610
OB08G15090
Oryza brachyantha
OB08G15090
I
0.610
ONIVA08G02450
Oryza nivara
ONIVA08G02450
I
0.610
ONIVA04G25060
Oryza nivara
ONIVA04G25060
I
0.610
OS08G0187500
Oryza sativa
OS08G0187500
I
0.610
MTR_2g088470
Medicago truncatula
MTR_2g088470
I
0.610
F775_52393
Aegilops tauschii
F775_52393
I
0.610
Sb07g005180
Sorghum bicolor
Sb07g005180
I
0.610
Sb07g002780
Sorghum bicolor
Sb07g002780
I
0.610
Sb06g029270
Sorghum bicolor
Sb06g029270
I
0.610
SapurV1A.0402s0050
Salix purpurea
SapurV1A.0402s0050
I
0.610
BGIOSGA027698
Oryza indica
BGIOSGA027698
I
0.610
Carubv10008621m.g
Capsella rubella
Carubv10008621m.g
I
0.610
Pavir.J39995
Panicum virgatum
Pavir.J39995
I
0.610
Si013285m.g
Setaria italica
Si013285m.g
I
0.610
Si009409m.g
Setaria italica
Si009409m.g
I
0.610
BGIOSGA014307
Oryza indica
BGIOSGA014307
I
0.610
SapurV1A.1440s0010
Salix purpurea
SapurV1A.1440s0010
I
0.610
LPERR08G02370
Leersia perrieri
LPERR08G02370
I
0.610
POPTR_0002s23080
Populus trichocarpa
POPTR_0002s23080
I
0.610
MLOC_65829
Hordeum vulgare
MLOC_65829
I
0.610
PK16243.1
Cannabis sativa
PK16243.1
I
0.610
POPTR_0014s15010
Populus trichocarpa
POPTR_0014s15010
I
0.610
Thhalv10006934m.g
Eutrema salsugineum
Thhalv10006934m.g
I
0.610
PRUPE_ppa019198mg
Prunus persica
PRUPE_ppa019198mg
I
0.610
BGIOSGA014304
Oryza indica
BGIOSGA014304
I
0.610
LPERR04G21690
Leersia perrieri
LPERR04G21690
I
0.610
Pavir.J18262
Panicum virgatum
Pavir.J18262
I
0.610
Pavir.J34398
Panicum virgatum
Pavir.J34398
I
0.608
PK24181.1
Cannabis sativa
PK24181.1
D
0.608
SapurV1A.0649s0040
Salix purpurea
SapurV1A.0649s0040
I
0.608
Pavir.Aa00335
Panicum virgatum
Pavir.Aa00335
I
0.608
Gorai.013G100200
Gossypium raimondii
Gorai.013G100200
I
0.608
Gorai.005G150100
Gossypium raimondii
Gorai.005G150100
I
0.608
cassava6464.valid.m1
Manihot esculenta
cassava6464.valid.m1
I
0.608
GRMZM2G126646
Zea mays
GRMZM2G126646
I
0.608
Traes_6DL_8D95F127B
Triticum aestivum
Traes_6DL_8D95F127B
I
0.608
TCM_044944
Theobroma cacao
TCM_044944
I
0.608
BRADI3G57567
Brachypodium distachyon
BRADI3G57567
I
0.608
Ca_18028
Cicer arietinum
Ca_18028
I
0.608
GRMZM2G118063
Zea mays
GRMZM2G118063
I
0.608
Cla018935
Citrullus lanatus
Cla018935
I
0.608
GRMZM2G145690
Zea mays
GRMZM2G145690
I
0.608
GSMUA_Achr5G14100_001
Musa acuminata
GSMUA_Achr5G14100_001
I
0.608
MLOC_15014
Hordeum vulgare
MLOC_15014
I
0.608
MTR_6g477820
Medicago truncatula
MTR_6g477820
I
0.608
POPTR_0015s05050
Populus trichocarpa
POPTR_0015s05050
I
0.608
PRUPE_ppa015345m2g
Prunus persica
PRUPE_ppa015345m2g
I
0.608
Si016483m.g
Setaria italica
Si016483m.g
I
0.608
Sb04g034580
Sorghum bicolor
Sb04g034580
I
0.608
Pm025254
Prunus mume
Pm025254
I
0.608
VIT_17s0053g00780
Vitis vinifera
VIT_17s0053g00780
I
0.608
GLYMA16G34350
Glycine max
GLYMA16G34350
I
0.608
GLYMA09G29810
Glycine max
GLYMA09G29810
I
0.608
mgf001299m
Mimulus guttatus
mgf001299m
I
0.608
Cucsa.112320
Cucumis sativus
Cucsa.112320
I
0.608
TCM_011330
Theobroma cacao
TCM_011330
I
0.607
Eucgr.H00609
Eucalyptus grandis
Eucgr.H00609
I
0.607
chr1.CM0088.1030.nc
Lotus japonicus
chr1.CM0088.1030.nc
I
0.606
GRMZM2G001289
Zea mays
GRMZM2G001289
I
0.606
Aquca_005_00546
Aquilegia coerulea
Aquca_005_00546
I
0.605
PGSC0003DMG400002394
Solanum tuberosum
PGSC0003DMG400002394
I
0.605
Solyc08g076370.2
Solanum lycopersicum
Solyc08g076370.2
I
0.605
mgf016401m
Mimulus guttatus
mgf016401m
I
0.605
LPERR04G18060
Leersia perrieri
LPERR04G18060
I
0.605
Solyc02g080260.2
Solanum lycopersicum
Solyc02g080260.2
I
0.605
evm.TU.supercontig_90.5
Carica papaya
evm.TU.supercontig_90.5
I
0.605
PK14673.1
Cannabis sativa
PK14673.1
I
0.605
gene13751-v1.0-hybrid
Fragaria vesca
gene13751-v1.0-hybrid
I
0.605
Ca_11470
Cicer arietinum
Ca_11470
I
0.605
30068.m002643
Ricinus communis
30068.m002643
I
0.605
MTR_5g029320
Medicago truncatula
MTR_5g029320
I
0.605
LjSGA_028083.1
Lotus japonicus
LjSGA_028083.1
I
0.605
PGSC0003DMG400002076
Solanum tuberosum
PGSC0003DMG400002076
I
0.605
mgf006361m
Mimulus guttatus
mgf006361m
I
0.603
Ciclev10019153m.g
Citrus clementina
Ciclev10019153m.g
I
0.603
evm.TU.supercontig_7.137
Carica papaya
evm.TU.supercontig_7.137
I
0.603
LjSGA_091885.1
Lotus japonicus
LjSGA_091885.1
I
0.603
HDG3
Arabidopsis lyrata
Al_scaffold_0125_1
I
0.603
cassava38731.m1
Manihot esculenta
cassava38731.m1
I
0.603
gene09297-v1.0-hybrid
Fragaria vesca
gene09297-v1.0-hybrid
I
0.603
SELMODRAFT_140884
Selaginella moellendorffii
SELMODRAFT_140884
I
0.601
Bra015996
Brassica rapa
Bra015996
I
0.601
SELMODRAFT_230527
Selaginella moellendorffii
SELMODRAFT_230527
I
0.601
SELMODRAFT_450553
Selaginella moellendorffii
SELMODRAFT_450553
I
0.601
Thhalv10018189m.g
Eutrema salsugineum
Thhalv10018189m.g
I
0.601
Bo6g116760
Brassica oleracea
Bo6g116760
I
0.601
SELMODRAFT_450554
Selaginella moellendorffii
SELMODRAFT_450554
I
0.601
PK19449.1
Cannabis sativa
PK19449.1
I
0.600
Eucgr.E04108
Eucalyptus grandis
Eucgr.E04108
I
0.600
MDP0000046392
Malus domestica
MDP0000046392
I
0.600
Pm009758
Prunus mume
Pm009758
I
0.600
gene19572-v1.0-hybrid
Fragaria vesca
gene19572-v1.0-hybrid
I
0.600
PRUPE_ppa001875mg
Prunus persica
PRUPE_ppa001875mg
I
0.600
Bo6g087810
Brassica oleracea
Bo6g087810
I
0.600
MDP0000765473
Malus domestica
MDP0000765473
I
0.600
Ciclev10014424m.g
Citrus clementina
Ciclev10014424m.g
I
0.600
MDP0000840574
Malus domestica
MDP0000840574
I
0.600
orange1.1g045292m.g
Citrus sinensis
orange1.1g045292m.g
I
0.600
Gorai.008G293300
Gossypium raimondii
Gorai.008G293300
I
0.599
Lus10031321.g
Linum usitatissimum
Lus10031321.g
I
0.599
Lus10031892.g
Linum usitatissimum
Lus10031892.g
I
0.599