ENSGMOG00000014888 (Gadus morhua)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSGMOG00000014888 T210689_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Lhx1
M00405_2.00 		Mus musculus
TRATDRNNN
NNNYHATYA		 PBM
Berger et al.(2008)
Lhx1_2240 		0.652 0.870
Lhx5
M00445_2.00 		Mus musculus
TAATKRNNN
NNNYMATTA		 PBM
Berger et al.(2008)
Lhx5_2279 		0.652 0.870
LHX1
M05410_2.00 		Homo sapiens
NTRATBRN
NYVATYAN		 SELEX
Yin et al.(2017)
LHX1_eDBD_HT-SELEX 		0.652 0.870
LHX5
M04936_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
LHX5_FL_HT-SELEX 		0.652 0.870
LHX1
M05411_2.00 		Homo sapiens
NHRAYGHN
NDCRTYDN		 SELEX
Yin et al.(2017)
LHX1_eDBD_Methyl-HT-SELEX 		0.652 0.870
LHX5
M04937_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
LHX5_FL_Methyl-HT-SELEX_1 		0.652 0.870
LHX5
M04938_2.00 		Homo sapiens
NTAATTRV
BYAATTAN		 SELEX
Yin et al.(2017)
LHX5_FL_Methyl-HT-SELEX_2 		0.652 0.870
Lim1
M03853_2.00 		Drosophila melanogaster
NTAATTRN
NYAATTAN		 SELEX
Nitta et al.(2015)
Lim1_1 		0.648 0.778
Lim1
M06529_2.00 		Drosophila melanogaster
TTAATTA
TAATTAA		 B1H
Mathelier et al.(2014)
MA0194.1 		0.648 0.778
Lim1
M06332_2.00 		Drosophila melanogaster
TTAATTA
TAATTAA		 B1H
Zhu et al.(2011)
Lim1_Cell_FBgn0026411 		0.648 0.778
Lim1
M06333_2.00 		Drosophila melanogaster
HTAATTR
YAATTAD		 B1H
Zhu et al.(2011)
Lim1_SOLEXA_FBgn0026411 		0.648 0.778
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGMOP00000015946 Homeodomain 183 237

Links

Other Homeodomain family TFs
Other Gadus morhua TFs

262 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BZO2H1 Arabidopsis thaliana AT4G02640 N 0.000
Bo9g005970 Brassica oleracea Bo9g005970 N 0.000
Bra036251 Brassica rapa Bra036251 N 0.000
BZO2H1 Arabidopsis lyrata fgenesh2_kg.6__3429__AT4G02640.2 N 0.000
Bostr.2983s0195 Boechera stricta Bostr.2983s0195 N 0.000
Cagra.0635s0017 Capsella grandiflora Cagra.0635s0017 N 0.000
Carubv10001050m.g Capsella rubella Carubv10001050m.g N 0.000