PBX2 (Sus scrofa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSSSCG00000001438 T215770_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PBX2
M08134_2.00 		Homo sapiens
NWGAKTGACABN
NVTGTCAMTCWN		 ChIP-seq
Mathelier et al.(2014)
MA1113.1 		0.867 1.000
PBX2
M09165_2.00 		Homo sapiens
KRVHKTGATTGAWKN
NMWTCAATCAMDBYM		 Misc
Kulakovskiy et al.(2013)
PBX2_HUMAN.H11MO.0.C 		0.867 1.000
Pbx2
M09199_2.00 		Mus musculus
KRVHKTGATTGAWKN
NMWTCAATCAMDBYM		 Misc
Kulakovskiy et al.(2013)
PBX2_MOUSE.H11MO.0.C 		0.867 1.000
pbx4
M02110_2.00 		Tetraodon nigroviridis
TTGAYGDV
BHCRTCAA		 PBM
Weirauch et al.(2014)
pTH6425 		0.867 0.982
Pbx1
M00513_2.00 		Mus musculus
NNDKANNNN
NNNNTMHNN		 PBM
Berger et al.(2008)
Pbx1_3203 		0.867 0.965
PBX1
M05362_2.00 		Homo sapiens
NTGATKGAYR
YRTCMATCAN		 SELEX
Yin et al.(2017)
PBX1_eDBD_HT-SELEX 		0.867 0.965
PBX1
M05364_2.00 		Homo sapiens
DTGMTKGRYN
NRYCMAKCAH		 SELEX
Yin et al.(2017)
PBX1_FL_HT-SELEX 		0.867 0.965
PBX1
M02685_2.00 		Homo sapiens
WWTGATTGATND
HNATCAATCAWW		 SELEX
Mathelier et al.(2014)
MA0070.1 		0.867 0.965
PBX1
M09164_2.00 		Homo sapiens
DGABTGRCRG
CYGYCAVTCH		 Misc
Kulakovskiy et al.(2013)
PBX1_HUMAN.H11MO.0.A 		0.867 0.965
PBX1
M09561_2.00 		Homo sapiens
TGABTGACAGSC
GSCTGTCAVTCA		 Misc
Heinz et al.(2010)
MCF7-PBX1_GSE28007 		0.867 0.965
PBX1
M10748_2.00 		Homo sapiens
WTKATTRDT
AHYAATMAW		 Transfac
Matys et al.(2006)
V$PBX1_01 		0.867 0.965
PBX1
M10749_2.00 		Homo sapiens
DNHTTGATTGATKDB
VHMATCAATCAADNH		 Transfac
Matys et al.(2006)
V$PBX1_02 		0.867 0.965
PBX1
M10750_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_03 		0.867 0.965
PBX1
M10751_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_05 		0.867 0.965
PBX1
M10752_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_10 		0.867 0.965
PBX1
M10753_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_Q3 		0.867 0.965
PBX1
M05363_2.00 		Homo sapiens
DTGAKKGAYG
CRTCMMTCAH		 SELEX
Yin et al.(2017)
PBX1_eDBD_Methyl-HT-SELEX 		0.867 0.965
PBX1
M05365_2.00 		Homo sapiens
MRTCAATCMH
DKGATTGAYK		 SELEX
Yin et al.(2017)
PBX1_FL_Methyl-HT-SELEX 		0.867 0.965
Pbx3
M09205_2.00 		Mus musculus
BBBTGATTGRYNDN
NHNRYCAATCAVVV		 Misc
Kulakovskiy et al.(2013)
PBX3_MOUSE.H11MO.0.A 		0.865 0.965
exd
M06487_2.00 		Drosophila melanogaster
YRTCAAAN
NTTTGAYR		 B1H
Mathelier et al.(2014)
MA0222.1 		0.822 0.947
exd
M06243_2.00 		Drosophila melanogaster
YRTCAAAN
NTTTGAYR		 B1H
Zhu et al.(2011)
Exd_Cell_FBgn0000611 		0.822 0.947
exd
M06244_2.00 		Drosophila melanogaster
NWRNWYNAAA
TTTNRWNYWN		 B1H
Zhu et al.(2011)
exd_FlyReg_FBgn0000611 		0.822 0.947
exd
M06245_2.00 		Drosophila melanogaster
NDTGAYRW
WYRTCAHN		 B1H
Zhu et al.(2011)
exd_SOLEXA_2_FBgn0000611 		0.822 0.947
exd
M06246_2.00 		Drosophila melanogaster
NNDTGAYR
YRTCAHNN		 B1H
Zhu et al.(2011)
Exd_SOLEXA_FBgn0000611 		0.822 0.947
PBX4
M00277_2.00 		Homo sapiens
NNDDWHDNNN
NNNHDWHHNN		 PBM
Barrera et al.(2016)
PBX4_REF 		0.815 0.912
PBX4
M10649_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX4_01 		0.815 0.912
CBG10835
M01243_2.00 		Caenorhabditis briggsae
NNTKAYDNN
NNHRTMANN		 PBM
Lambert et al.(2019)
pTH11444 		0.691 0.579
PBX4
M00276_2.00 		Homo sapiens
NYTAATTADNN
NNHTAATTARN		 PBM
Barrera et al.(2016)
PBX4_R215Q 		0.677 0.895
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSSSCP00000001548 Homeodomain 245 304

Links

Other Homeodomain family TFs
Other Sus scrofa TFs

435 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT2G27930 Arabidopsis thaliana AT2G27930 N
BGIOSGA005806 Oryza indica BGIOSGA005806 N
Bo4g073120 Brassica oleracea Bo4g073120 N
Bo4g164920 Brassica oleracea Bo4g164920 N
Bra011992 Brassica rapa Bra011992 N
GLYMA01G02180 Glycine max GLYMA01G02180 N
GLYMA03G34530 Glycine max GLYMA03G34530 N
GLYMA08G36641 Glycine max GLYMA08G36641 N
GLYMA09G33770 Glycine max GLYMA09G33770 N
GLYMA10G07240 Glycine max GLYMA10G07240 N
GLYMA13G21140 Glycine max GLYMA13G21140 N
GLYMA19G37220 Glycine max GLYMA19G37220 N
GRMZM2G086403 Zea mays GRMZM2G086403 N
GRMZM2G091044 Zea mays GRMZM2G091044 N
GRMZM2G171934 Zea mays GRMZM2G171934 N
GRMZM2G408887 Zea mays GRMZM2G408887 N
GSMUA_Achr11G17810_001 Musa acuminata GSMUA_Achr11G17810_001 N
GSMUA_Achr4G19110_001 Musa acuminata GSMUA_Achr4G19110_001 N
GSMUA_Achr5G03420_001 Musa acuminata GSMUA_Achr5G03420_001 N
GSMUA_Achr5G13970_001 Musa acuminata GSMUA_Achr5G13970_001 N
GSMUA_Achr5G18120_001 Musa acuminata GSMUA_Achr5G18120_001 N
GSMUA_AchrUn_randomG07560_001 Musa acuminata GSMUA_AchrUn_randomG07560_001 N
LPERR02G23300 Leersia perrieri LPERR02G23300 N
MTR_1g062160 Medicago truncatula MTR_1g062160 N
MTR_5g030130 Medicago truncatula MTR_5g030130 N
MTR_7g102790 Medicago truncatula MTR_7g102790 N
MTR_8g066820 Medicago truncatula MTR_8g066820 N
OB02G35810 Oryza brachyantha OB02G35810 N
OBART02G28660 Oryza barthii OBART02G28660 N
OGLUM02G29250 Oryza glumaepatula OGLUM02G29250 N
OLONG_023395 Oryza longistaminata OLONG_023395 N
ONIVA02G31400 Oryza nivara ONIVA02G31400 N
OPUNC02G26310 Oryza punctata OPUNC02G26310 N
ORGLA02G0246600 Oryza glaberrima ORGLA02G0246600 N
ORUFI02G30220 Oryza rufipogon ORUFI02G30220 N
OS02G0692700 Oryza sativa OS02G0692700 N
PGSC0003DMG400008598 Solanum tuberosum PGSC0003DMG400008598 N
POPTR_0001s02390 Populus trichocarpa POPTR_0001s02390 N
POPTR_0001s21990 Populus trichocarpa POPTR_0001s21990 N
POPTR_0003s09160 Populus trichocarpa POPTR_0003s09160 N
POPTR_0009s00830 Populus trichocarpa POPTR_0009s00830 N
POPTR_0016s10920 Populus trichocarpa POPTR_0016s10920 N
PRUPE_ppa011458mg Prunus persica PRUPE_ppa011458mg N
Sb04g031230 Sorghum bicolor Sb04g031230 N
Sb07g024020 Sorghum bicolor Sb07g024020 N
Solyc10g085800.1 Solanum lycopersicum Solyc10g085800.1 N
TCM_022356 Theobroma cacao TCM_022356 N
TCM_041560 Theobroma cacao TCM_041560 N
VIT_02s0012g01400 Vitis vinifera VIT_02s0012g01400 N
VIT_08s0007g04560 Vitis vinifera VIT_08s0007g04560 N
Ca_00735 Cicer arietinum Ca_00735 N
Ca_11505 Cicer arietinum Ca_11505 N
Ca_19047 Cicer arietinum Ca_19047 N
Cla001071 Citrullus lanatus Cla001071 N
Cla016461 Citrullus lanatus Cla016461 N
Pm001175 Prunus mume Pm001175 N
Pm012470 Prunus mume Pm012470 N
29589.m001281 Ricinus communis 29589.m001281 N
30054.m000824 Ricinus communis 30054.m000824 N
cassava28497.m1 Manihot esculenta cassava28497.m1 N
cassava37607.valid.m1 Manihot esculenta cassava37607.valid.m1 N
Cucsa.200310 Cucumis sativus Cucsa.200310 N
Cucsa.313040 Cucumis sativus Cucsa.313040 N
Cucsa.378840 Cucumis sativus Cucsa.378840 N
e_gw1.1.253.1 Physcomitrella patens e_gw1.1.253.1 N
fgenesh1_pg.scaffold_102000043 Physcomitrella patens fgenesh1_pg.scaffold_102000043 N
mgf006916m Mimulus guttatus mgf006916m N
mgf013167m Mimulus guttatus mgf013167m N
mgf023930m Mimulus guttatus mgf023930m N
Aquca_005_00468 Aquilegia coerulea Aquca_005_00468 N
Aquca_009_01064 Aquilegia coerulea Aquca_009_01064 N
Bostr.27991s0138 Boechera stricta Bostr.27991s0138 N
Cagra.15046s0001 Capsella grandiflora Cagra.15046s0001 N
Carubv10024278m.g Capsella rubella Carubv10024278m.g N
Ciclev10012712m.g Citrus clementina Ciclev10012712m.g N
Ciclev10030107m.g Citrus clementina Ciclev10030107m.g N
Eucgr.A01594 Eucalyptus grandis Eucgr.A01594 N
Eucgr.B03915 Eucalyptus grandis Eucgr.B03915 N
Eucgr.D02206 Eucalyptus grandis Eucgr.D02206 N
Eucgr.E00276 Eucalyptus grandis Eucgr.E00276 N
evm.TU.supercontig_30.61 Carica papaya evm.TU.supercontig_30.61 N
evm.TU.supercontig_5.128 Carica papaya evm.TU.supercontig_5.128 N
gene00954-v1.0-hybrid Fragaria vesca gene00954-v1.0-hybrid N
Gorai.001G117900 Gossypium raimondii Gorai.001G117900 N
Gorai.003G183000 Gossypium raimondii Gorai.003G183000 N
Gorai.006G159900 Gossypium raimondii Gorai.006G159900 N
Gorai.006G217100 Gossypium raimondii Gorai.006G217100 N
Gorai.008G226100 Gossypium raimondii Gorai.008G226100 N
Gorai.009G411100 Gossypium raimondii Gorai.009G411100 N
Lus10000482.g Linum usitatissimum Lus10000482.g N
Lus10004577.g Linum usitatissimum Lus10004577.g N
Lus10027735.g Linum usitatissimum Lus10027735.g N
Lus10030968.g Linum usitatissimum Lus10030968.g N
Lus10035554.g Linum usitatissimum Lus10035554.g N
Lus10040082.g Linum usitatissimum Lus10040082.g N
orange1.1g027730m.g Citrus sinensis orange1.1g027730m.g N
orange1.1g028583m.g Citrus sinensis orange1.1g028583m.g N
Pavir.Aa01152 Panicum virgatum Pavir.Aa01152 N
Pavir.Ab01769 Panicum virgatum Pavir.Ab01769 N
SapurV1A.0226s0270 Salix purpurea SapurV1A.0226s0270 N
SapurV1A.0288s0160 Salix purpurea SapurV1A.0288s0160 N
SapurV1A.0360s0060 Salix purpurea SapurV1A.0360s0060 N
Thhalv10017279m.g Eutrema salsugineum Thhalv10017279m.g N
PK29286.1 Cannabis sativa PK29286.1 N
chr3.CM0396.500.nd Lotus japonicus chr3.CM0396.500.nd N