GH21899 (Drosophila grimshawi)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 FBgn0129360 T217817_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Optix
M02124_2.00 		Drosophila melanogaster
NNNNNDATMN
NKATHNNNNN		 PBM
Weirauch et al.(2014)
pTH5437 		0.867 1.000
Optix
M03850_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
Optix_1 		0.867 1.000
Optix
M06526_2.00 		Drosophila melanogaster
TGATA
TATCA		 B1H
Mathelier et al.(2014)
MA0199.1 		0.867 1.000
Optix
M06327_2.00 		Drosophila melanogaster
HHVTGATA
TATCABDD		 B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360 		0.867 1.000
Optix
M06328_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360 		0.867 1.000
Six3
M00483_2.00 		Mus musculus
NNNAYMN
NKRTNNN		 PBM
Berger et al.(2008)
Six3_1732 		0.867 0.947
SIX3
M05159_2.00 		Homo sapiens
NNYGATABBN
NVVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX 		0.867 0.947
SIX3
M10698_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX3_Q6 		0.867 0.947
SIX3
M05160_2.00 		Homo sapiens
NNYGATABVB
VBVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX 		0.867 0.947
SIX6
M00326_2.00 		Homo sapiens
NNDATMB
VKATHNN		 PBM
Barrera et al.(2016)
SIX6_REF 		0.865 0.930
Six6
M00169_2.00 		Mus musculus
NNAYMNN
NNKRTNN		 PBM
Badis et al.(2009)
Six6_2267 		0.865 0.930
Six6
M00412_2.00 		Mus musculus
NNNTGATAYCN
NGRTATCANNN		 PBM
Berger et al.(2008)
Six6_2267 		0.865 0.930
six3
M02102_2.00 		Oryzias latipes
NNDAYMBNNN
NNNVKRTHNN		 PBM
Weirauch et al.(2014)
pTH5928 		0.865 0.930
SIX6
M05357_2.00 		Homo sapiens
NNYGATASVB
VBSTATCRNN		 SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX 		0.865 0.930
SIX6
M00325_2.00 		Homo sapiens
NNNDATMB
VKATHNNN		 PBM
Barrera et al.(2016)
SIX6_H141N 		0.865 0.930
SIX6
M05358_2.00 		Homo sapiens
VBVYAYCRNN
NNYGRTRBVB		 SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX 		0.865 0.930
SIX6
M00327_2.00 		Homo sapiens
NHDAYMBNN
NNVKRTHDN		 PBM
Barrera et al.(2016)
SIX6_T165A 		0.859 0.912
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
FBpp0155805 Homeodomain 157 213

Links

Other Homeodomain family TFs
Other Drosophila grimshawi TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PGSC0003DMG400009304 Solanum tuberosum PGSC0003DMG400009304 I
GRMZM2G162409 Zea mays GRMZM2G162409 I
PGSC0003DMG400007401 Solanum tuberosum PGSC0003DMG400007401 I
MLOC_63597 Hordeum vulgare MLOC_63597 I
OS08G0346400 Oryza sativa OS08G0346400 I
OGLUM08G12590 Oryza glumaepatula OGLUM08G12590 I
Gorai.003G021300 Gossypium raimondii Gorai.003G021300 I
Cla005572 Citrullus lanatus Cla005572 N
PDK_20s1744641g001 Phoenix dactylifera PDK_20s1744641g001 N
30005.m001245 Ricinus communis 30005.m001245 N
e_gw1.141.94.1 Physcomitrella patens e_gw1.141.94.1 N
Carubv10012777m.g Capsella rubella Carubv10012777m.g N
evm.TU.supercontig_817.1 Carica papaya evm.TU.supercontig_817.1 N
orange1.1g038008m.g Citrus sinensis orange1.1g038008m.g N
Pavir.Aa00126 Panicum virgatum Pavir.Aa00126 N
Pavir.Ba02286 Panicum virgatum Pavir.Ba02286 N
LjSGA_102149.2 Lotus japonicus LjSGA_102149.2 N
BGIOSGA028509 Oryza indica BGIOSGA028509 N
scaffold_603773.1 Arabidopsis lyrata scaffold_603773.1 N
Sb04g036955 Sorghum bicolor Sb04g036955 N
PRUPE_ppa007491m2g Prunus persica PRUPE_ppa007491m2g N
OPUNC08G10730 Oryza punctata OPUNC08G10730 N
OPUNC02G34240 Oryza punctata OPUNC02G34240 N
OMERI02G34900 Oryza meridionalis OMERI02G34900 N
OLONG_004751 Oryza longistaminata OLONG_004751 N
OBART02G37080 Oryza barthii OBART02G37080 N
GSMUA_Achr6G20070_001 Musa acuminata GSMUA_Achr6G20070_001 N
F775_00616 Aegilops tauschii F775_00616 N
Bra034737 Brassica rapa Bra034737 N
Bra011042 Brassica rapa Bra011042 N