CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

GRMZM2G003304 *(Zea mays)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00046 (Homeobox)	IPR001356	GRMZM2G003304	T218944_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
HAT5 M06914_2.00	Arabidopsis thaliana	NHAATAATTDW	WHAATTATTDN	Dap-seq OMalley et al.(2016) HAT5_col_a	0.825	0.842
HAT5 M06915_2.00	Arabidopsis thaliana	WNYAATAATTRWDN	NHWYAATTATTRNW	Dap-seq OMalley et al.(2016) HAT5_colamp_a	0.825	0.842
HAT5 M02683_2.00	Arabidopsis thaliana	SCAATAATTNNV	BNNAATTATTGS	SELEX Mathelier et al.(2014) MA0008.2	0.825	0.842
HAT5 M10624_2.00	Arabidopsis thaliana	YSCAATAATTNNVN	NBNNAATTATTGSR	Transfac Matys et al.(2006) P$ATHB1_01	0.825	0.842
estExt_gwp_gw1.C_70211 M02220_2.00	Physcomitrella patens	HMATNANDNN	NNHNTNATKD	PBM Weirauch et al.(2014) pTH8489	0.793	0.772
ATHB-16 M02050_2.00	Arabidopsis thaliana	YAATMATT	AATKATTR	PBM Weirauch et al.(2014) pTH7270	0.793	0.754
ATHB-6 M02040_2.00	Arabidopsis thaliana	HATNATTDN	NHAATNATD	PBM Weirauch et al.(2014) pTH7670	0.793	0.737
ATHB-6 M06909_2.00	Arabidopsis thaliana	NNNHATKATTR	YAATMATDNNN	Dap-seq OMalley et al.(2016) ATHB6_col_a	0.793	0.737
ATHB-6 M06910_2.00	Arabidopsis thaliana	NCAATAATTRN	NYAATTATTGN	Dap-seq OMalley et al.(2016) ATHB6_colamp_a	0.793	0.737
ATHB-13 M06900_2.00	Arabidopsis thaliana	HYAATAATTDD	HHAATTATTRD	Dap-seq OMalley et al.(2016) ATHB13_col_a	0.775	0.719
ATHB-13 M06901_2.00	Arabidopsis thaliana	NYAATAATTRW	WYAATTATTRN	Dap-seq OMalley et al.(2016) ATHB13_colamp_a	0.775	0.719
ATHB-5 M06932_2.00	Arabidopsis thaliana	NYAATMATTND	HNAATKATTRN	Dap-seq OMalley et al.(2016) ATHB5_col_a	0.775	0.719
ATHB-5 M06933_2.00	Arabidopsis thaliana	NYAATMATTN	NAATKATTRN	Dap-seq OMalley et al.(2016) ATHB5_colamp_a	0.775	0.719
ATHB-5 M02684_2.00	Arabidopsis thaliana	CAATVATTGVVSV	BSBBCAATBATTG	SELEX Mathelier et al.(2014) MA0110.2	0.775	0.719
ATHB-5 M10630_2.00	Arabidopsis thaliana	CAATVATTG	CAATBATTG	Transfac Matys et al.(2006) P$ATHB5_01	0.775	0.719
ATHB-21 M06907_2.00	Arabidopsis thaliana	NNWHCAATWATTDN	NHAATWATTGDWNN	Dap-seq OMalley et al.(2016) ATHB21_col_a	0.703	0.649
ATHB-21 M06908_2.00	Arabidopsis thaliana	WWDDNNNHAATWATTGDTNN	NNAHCAATWATTDNNNHHWW	Dap-seq OMalley et al.(2016) ATHB21_colamp_a	0.703	0.649
HB-5 M06924_2.00	Arabidopsis thaliana	NNAHCAATWATTKDNNNHWWH	DWWDNNNHMAATWATTGDTNN	Dap-seq OMalley et al.(2016) ATHB40_col_a	0.702	0.667
HB-5 M06925_2.00	Arabidopsis thaliana	HHAATWATTGDWNN	NNWHCAATWATTDD	Dap-seq OMalley et al.(2016) ATHB40_colamp_a	0.702	0.667
ATHB-53 M06934_2.00	Arabidopsis thaliana	HMAATAATTRD	HYAATTATTKD	Dap-seq OMalley et al.(2016) ATHB53_col_a	0.697	0.632
ATHB-53 M06935_2.00	Arabidopsis thaliana	NNWHCAATWATTDDN	NHHAATWATTGDWNN	Dap-seq OMalley et al.(2016) ATHB53_colamp_a	0.697	0.632
ATHB-20 M06912_2.00	Arabidopsis thaliana	HYAATAATTRD	HYAATTATTRD	Dap-seq OMalley et al.(2016) ATHB20_col_a	0.657	0.719
ATHB-20 M06913_2.00	Arabidopsis thaliana	HYAATMATTRD	HYAATKATTRD	Dap-seq OMalley et al.(2016) ATHB20_colamp_a	0.657	0.719
PK20392.1 M01250_2.00	Cannabis sativa	NHAATMATDN	NHATKATTDN	PBM Lambert et al.(2019) pTH11331	0.637	0.719
PK20392.1 M01251_2.00	Cannabis sativa	NHAATMATDN	NHATKATTDN	PBM Lambert et al.(2019) pTH11332	0.637	0.719
For this family, TFs with SR scores > 0.599* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
GRMZM2G003304_P01	Homeodomain	75	131	PEKKRRLTAEQVQLLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKT

Links
Other Homeodomain family TFs
Other *Zea mays* TFs

784 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
Bo7g065010	Brassica oleracea	Bo7g065010	I	0.000
Thhalv10005380m.g	Eutrema salsugineum	Thhalv10005380m.g	I	0.000
Carubv10026898m.g	Capsella rubella	Carubv10026898m.g	I	0.000
Cagra.10427s0040	Capsella grandiflora	Cagra.10427s0040	I	0.000
Bostr.0568s0042	Boechera stricta	Bostr.0568s0042	I	0.000
Ca_01981	Cicer arietinum	Ca_01981	I	0.000
Solyc08g079120.1	Solanum lycopersicum	Solyc08g079120.1	I	0.000
SELMODRAFT_57388	Selaginella moellendorffii	SELMODRAFT_57388	I	0.000
SELMODRAFT_451784	Selaginella moellendorffii	SELMODRAFT_451784	I	0.000
MTR_5g021710	Medicago truncatula	MTR_5g021710	I	0.000
GLYMA11G07990	Glycine max	GLYMA11G07990	I	0.000
Bra012065	Brassica rapa	Bra012065	I	0.000
GLYMA01G37310	Glycine max	GLYMA01G37310	I	0.000
ANAC105	Arabidopsis lyrata	fgenesh2_kg.8__2792__AT5G66300.1	I	0.000
TRIUR3_24878	Triticum urartu	TRIUR3_24878	N	0.000
Traes_2AL_C0670BBDD	Triticum aestivum	Traes_2AL_C0670BBDD	N	0.000
Traes_2AL_CB84F42D2	Triticum aestivum	Traes_2AL_CB84F42D2	N	0.000
Traes_2AL_F001B4F26	Triticum aestivum	Traes_2AL_F001B4F26	N	0.000
Traes_2BL_0AED4E377	Triticum aestivum	Traes_2BL_0AED4E377	N	0.000
Traes_2BL_CBFB7D720	Triticum aestivum	Traes_2BL_CBFB7D720	N	0.000
Traes_2DL_607AD3522	Triticum aestivum	Traes_2DL_607AD3522	N	0.000
Traes_7DL_DF64397D7	Triticum aestivum	Traes_7DL_DF64397D7	N	0.000
TRIUR3_10969	Triticum urartu	TRIUR3_10969	N	0.000
Traes_2AL_61C5A2D03	Triticum aestivum	Traes_2AL_61C5A2D03	N	0.000
TRIUR3_24879	Triticum urartu	TRIUR3_24879	N	0.000
F775_12735	Aegilops tauschii	F775_12735	N	0.000
F775_00942	Aegilops tauschii	F775_00942	N	0.000
BRADI5G27467	Brachypodium distachyon	BRADI5G27467	N	0.000
Pavir.J20890	Panicum virgatum	Pavir.J20890	N	0.000
Pavir.J31179	Panicum virgatum	Pavir.J31179	N	0.000
AC212859.3_FG008	Zea mays	AC212859.3_FG008	N	0.000
OPUNC08G00360	Oryza punctata	OPUNC08G00360	N	0.000
GRMZM2G048826	Zea mays	GRMZM2G048826	N	0.000
LPERR08G00380	Leersia perrieri	LPERR08G00380	N	0.000
MLOC_19933	Hordeum vulgare	MLOC_19933	N	0.000
MLOC_66083	Hordeum vulgare	MLOC_66083	N	0.000
MLOC_67250	Hordeum vulgare	MLOC_67250	N	0.000
OB08G10370	Oryza brachyantha	OB08G10370	N	0.000
OGLUM08G00350	Oryza glumaepatula	OGLUM08G00350	N	0.000
OMERI08G00600	Oryza meridionalis	OMERI08G00600	N	0.000
Traes_2AL_8EE7F34F6	Triticum aestivum	Traes_2AL_8EE7F34F6	N	0.000
ORUFI08G00330	Oryza rufipogon	ORUFI08G00330	N	0.000
OS08G0103900	Oryza sativa	OS08G0103900	N	0.000
Sb06g034010	Sorghum bicolor	Sb06g034010	N	0.000
Sb07g000470	Sorghum bicolor	Sb07g000470	N	0.000
F775_52611	Aegilops tauschii	F775_52611	N	0.000
Si014149m.g	Setaria italica	Si014149m.g	N	0.000
F775_16517	Aegilops tauschii	F775_16517	N	0.000

GRMZM2G003304 (Zea mays) Homeodomain

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

784 Related TFs

GRMZM2G003304 **(Zea mays)
Homeodomain**