ML04768a (Mnemiopsis leidyi)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ML04768a T220621_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PBX4
M00276_2.00 		Homo sapiens
NYTAATTADNN
NNHTAATTARN		 PBM
Barrera et al.(2016)
PBX4_R215Q 		0.783 0.737
Pbx1
M00513_2.00 		Mus musculus
NNDKANNNN
NNNNTMHNN		 PBM
Berger et al.(2008)
Pbx1_3203 		0.651 0.754
PBX1
M05362_2.00 		Homo sapiens
NTGATKGAYR
YRTCMATCAN		 SELEX
Yin et al.(2017)
PBX1_eDBD_HT-SELEX 		0.651 0.754
PBX1
M05364_2.00 		Homo sapiens
DTGMTKGRYN
NRYCMAKCAH		 SELEX
Yin et al.(2017)
PBX1_FL_HT-SELEX 		0.651 0.754
PBX1
M02685_2.00 		Homo sapiens
WWTGATTGATND
HNATCAATCAWW		 SELEX
Mathelier et al.(2014)
MA0070.1 		0.651 0.754
PBX1
M09164_2.00 		Homo sapiens
DGABTGRCRG
CYGYCAVTCH		 Misc
Kulakovskiy et al.(2013)
PBX1_HUMAN.H11MO.0.A 		0.651 0.754
Pbx3
M09205_2.00 		Mus musculus
BBBTGATTGRYNDN
NHNRYCAATCAVVV		 Misc
Kulakovskiy et al.(2013)
PBX3_MOUSE.H11MO.0.A 		0.651 0.754
PBX1
M09561_2.00 		Homo sapiens
TGABTGACAGSC
GSCTGTCAVTCA		 Misc
Heinz et al.(2010)
MCF7-PBX1_GSE28007 		0.651 0.754
PBX1
M10748_2.00 		Homo sapiens
WTKATTRDT
AHYAATMAW		 Transfac
Matys et al.(2006)
V$PBX1_01 		0.651 0.754
PBX1
M10749_2.00 		Homo sapiens
DNHTTGATTGATKDB
VHMATCAATCAADNH		 Transfac
Matys et al.(2006)
V$PBX1_02 		0.651 0.754
PBX1
M10750_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_03 		0.651 0.754
PBX1
M10751_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_05 		0.651 0.754
PBX1
M10752_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_10 		0.651 0.754
PBX1
M10753_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_Q3 		0.651 0.754
PBX1
M05363_2.00 		Homo sapiens
DTGAKKGAYG
CRTCMMTCAH		 SELEX
Yin et al.(2017)
PBX1_eDBD_Methyl-HT-SELEX 		0.651 0.754
PBX1
M05365_2.00 		Homo sapiens
MRTCAATCMH
DKGATTGAYK		 SELEX
Yin et al.(2017)
PBX1_FL_Methyl-HT-SELEX 		0.651 0.754
pbx4
M02110_2.00 		Tetraodon nigroviridis
TTGAYGDV
BHCRTCAA		 PBM
Weirauch et al.(2014)
pTH6425 		0.651 0.737
PBX2
M08134_2.00 		Homo sapiens
NWGAKTGACABN
NVTGTCAMTCWN		 ChIP-seq
Mathelier et al.(2014)
MA1113.1 		0.651 0.737
PBX2
M09165_2.00 		Homo sapiens
KRVHKTGATTGAWKN
NMWTCAATCAMDBYM		 Misc
Kulakovskiy et al.(2013)
PBX2_HUMAN.H11MO.0.C 		0.651 0.737
Pbx2
M09199_2.00 		Mus musculus
KRVHKTGATTGAWKN
NMWTCAATCAMDBYM		 Misc
Kulakovskiy et al.(2013)
PBX2_MOUSE.H11MO.0.C 		0.651 0.737
PBX4
M00277_2.00 		Homo sapiens
NNDDWHDNNN
NNNHDWHHNN		 PBM
Barrera et al.(2016)
PBX4_REF 		0.645 0.719
PBX4
M10649_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX4_01 		0.645 0.719
exd
M06487_2.00 		Drosophila melanogaster
YRTCAAAN
NTTTGAYR		 B1H
Mathelier et al.(2014)
MA0222.1 		0.606 0.737
exd
M06243_2.00 		Drosophila melanogaster
YRTCAAAN
NTTTGAYR		 B1H
Zhu et al.(2011)
Exd_Cell_FBgn0000611 		0.606 0.737
exd
M06244_2.00 		Drosophila melanogaster
NWRNWYNAAA
TTTNRWNYWN		 B1H
Zhu et al.(2011)
exd_FlyReg_FBgn0000611 		0.606 0.737
exd
M06245_2.00 		Drosophila melanogaster
NDTGAYRW
WYRTCAHN		 B1H
Zhu et al.(2011)
exd_SOLEXA_2_FBgn0000611 		0.606 0.737
exd
M06246_2.00 		Drosophila melanogaster
NNDTGAYR
YRTCAHNN		 B1H
Zhu et al.(2011)
Exd_SOLEXA_FBgn0000611 		0.606 0.737
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ML04768a-PA Homeodomain 199 258

Links

Other Homeodomain family TFs
Other Mnemiopsis leidyi TFs

404 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GL15563 Drosophila persimilis FBgn0153167 N
NEMVEDRAFT_v1g66221 Nematostella vectensis NEMVEDRAFT_v1g66221 N
MESCA000924 Megaselia scalaris MESCA000924 N
LotgiG130257 Lottia gigantea LotgiG130257 N
L798_05013 Zootermopsis nevadensis L798_05013 N
HelroG144862 Helobdella robusta HelroG144862 N
GB51085 Apis mellifera GB51085 N
GE21548 Drosophila yakuba FBgn0238803 N
GK17273 Drosophila willistoni FBgn0219272 N
GD13944 Drosophila simulans FBgn0185640 N
GM14767 Drosophila sechellia FBgn0169688 N
NV14899 Nasonia vitripennis NV14899 N
GG15330 Drosophila erecta FBgn0107582 N
GF23530 Drosophila ananassae FBgn0100524 N
GA12179 Drosophila pseudoobscura FBgn0072227 N
CG13296 Drosophila melanogaster FBgn0035687 N
ENSXMAG00000002547 Xiphophorus maculatus ENSXMAG00000002547 N
PRDM13 Tursiops truncatus ENSTTRG00000004705 N
prdm13 Takifugu rubripes ENSTRUG00000000334 N
prdm13 Tetraodon nigroviridis ENSTNIG00000006867 N
ENSSTOG00000016567 Ictidomys tridecemlineatus ENSSTOG00000016567 N
PRDM13 Sus scrofa ENSSSCG00000004354 N
Cmyd_10002903 Chelonia mydas Cmyd_10002903 N
BGLB013051 Biomphalaria glabrata BGLB013051 N
prdm13 Xenopus tropicalis XB-GENE-960155 N
SMU15022318 Schmidtea mediterranea SMU15022318 N
HHAL009600-PA Halyomorpha halys HHAL009600-PA N
Sakowv30027334m.g Saccoglossus kowalevskii Sakowv30027334m.g N
Ocbimv22009191m.g Octopus bimaculoides Ocbimv22009191m.g N
gw.79.7.1 Branchiostoma floridae gw.79.7.1 N
Ogr12758 Ophisaurus gracilis Ogr12758 N
ENSP00000352819 Macaca fascicularis ENSP00000352819 N
ENSP00000352819-D1 Bos grunniens ENSP00000352819-D1 N
ENSSHAG00000013340 Sarcophilus harrisii ENSSHAG00000013340 N
Alligator_sinensis_CCG004871.1 Alligator sinensis Alligator_sinensis_CCG004871.1 N
YQE_11778 Dendroctonus ponderosae YQE_11778 N
tetur10g01540 Tetranychus urticae tetur10g01540 N
TC014373 Tribolium castaneum TC014373 N
SPU_012050 Strongylocentrotus purpuratus SPU_012050 N
SMAR010327 Strigamia maritima SMAR010327 N
SMAR008272 Strigamia maritima SMAR008272 N
RPRC014451 Rhodnius prolixus RPRC014451 N
PHUM605290 Pediculus humanus PHUM605290 N
PRDM13 Choloepus hoffmanni ENSCHOG00000011613 N
PRDM13 Gorilla gorilla ENSGGOG00000006947 N
prdm13 Gasterosteus aculeatus ENSGACG00000005032 N
PRDM13 Homo sapiens ENSG00000112238 N
PRDM13 Felis catus ENSFCAG00000010288 N
PRDM13 Echinops telfairi ENSETEG00000004709 N
ENSDORG00000003558 Dipodomys ordii ENSDORG00000003558 N
PRDM13 Dasypus novemcinctus ENSDNOG00000006520 N
prdm13 Danio rerio ENSDARG00000078701 N
ENSCSAG00000014622 Chlorocebus sabaeus ENSCSAG00000014622 N
PRDM13 Callithrix jacchus ENSCJAG00000001421 N
ENSGMOG00000006125 Gadus morhua ENSGMOG00000006125 N
PRDM13 Canis familiaris ENSCAFG00000023314 N
PRDM13 Bos taurus ENSBTAG00000006095 N
ENSAPLG00000007652 Anas platyrhynchos ENSAPLG00000007652 N
ENSAMXG00000008885 Astyanax mexicanus ENSAMXG00000008885 N
ENSAMEG00000008949 Ailuropoda melanoleuca ENSAMEG00000008949 N
DAPPUDRAFT_111472 Daphnia pulex DAPPUDRAFT_111472 N
CPIJ016312 Culex quinquefasciatus CPIJ016312 N
CGI_10026455 Crassostrea gigas CGI_10026455 N
CapteG164570 Capitella teleta CapteG164570 N
AAEL001736 Aedes aegypti AAEL001736 N
PRDM13 Oryctolagus cuniculus ENSOCUG00000003216 N
Prdm13 Rattus norvegicus ENSRNOG00000007683 N
PRDM13 Pteropus vampyrus ENSPVAG00000001695 N
PRDM13 Pan troglodytes ENSPTRG00000018445 N
ENSPSIG00000002567 Pelodiscus sinensis ENSPSIG00000002567 N
ENSPPYG00000016866 Pongo abelii ENSPPYG00000016866 N
ENSPFOG00000019371 Poecilia formosa ENSPFOG00000019371 N
ENSPANG00000017638 Papio anubis ENSPANG00000017638 N
prdm13 Oryzias latipes ENSORLG00000002129 N
ENSONIG00000000112 Oreochromis niloticus ENSONIG00000000112 N
PRDM13 Otolemur garnettii ENSOGAG00000031927 N
CpipJ_CPIJ016312 Culex pipiens CpipJ_CPIJ016312 N
ENSNLEG00000013845 Nomascus leucogenys ENSNLEG00000013845 N
Prdm13 Mus musculus ENSMUSG00000040478 N
ENSMPUG00000001648 Mustela putorius furo ENSMPUG00000001648 N
PRDM13 Monodelphis domestica ENSMODG00000018089 N
PRDM13 Myotis lucifugus ENSMLUG00000001899 N
ENSMICG00000001097 Microcebus murinus ENSMICG00000001097 N
ENSLOCG00000017084 Lepisosteus oculatus ENSLOCG00000017084 N
PRDM13 Loxodonta africana ENSLAFG00000012439 N
ENSLACG00000008814 Latimeria chalumnae ENSLACG00000008814 N