OBART02G03860 (Oryza barthii)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 OBART02G03860 T221306_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-4
M01065_2.00 		Arabidopsis thaliana
NBMTGCATRNN
NNYATGCAKVN		 PBM
Sullivan et al.(2014)
pTH8184 		0.821 0.632
ATHB-4
M02042_2.00 		Arabidopsis thaliana
NNWTNATTRN
NYAATNAWNN		 PBM
Weirauch et al.(2014)
pTH8667 		0.821 0.632
HAT3
M00728_2.00 		Arabidopsis thaliana
DTGATTRV
BYAATCAH		 PBM
Chang et al.(2013)
pTH7400 		0.801 0.632
HAT2
M06929_2.00 		Arabidopsis thaliana
NHAATGATTRN
NYAATCATTDN		 Dap-seq
OMalley et al.(2016)
HAT2_colamp_a 		0.793 0.649
HAT2
M06930_2.00 		Arabidopsis thaliana
WNYAATCATWD
HWATGATTRNW		 Dap-seq
OMalley et al.(2016)
HAT2_col_v31 		0.793 0.649
HAT1
M02047_2.00 		Arabidopsis thaliana
NMATGATTRN
NYAATCATKN		 PBM
Weirauch et al.(2014)
pTH8107 		0.764 0.667
HAT1
M06922_2.00 		Arabidopsis thaliana
NHAATGATTRNNWDW
WHWNNYAATCATTDN		 Dap-seq
OMalley et al.(2016)
HAT1_col_a 		0.764 0.667
HAT1
M06923_2.00 		Arabidopsis thaliana
NYAATCATTDN
NHAATGATTRN		 Dap-seq
OMalley et al.(2016)
HAT1_colamp_a 		0.764 0.667
HAT22
M06926_2.00 		Arabidopsis thaliana
NNYAATCATT
AATGATTRNN		 Dap-seq
OMalley et al.(2016)
HAT22_col_a 		0.725 0.649
ATHB-X
M06902_2.00 		Arabidopsis thaliana
HHAATRATTRN
NYAATYATTDD		 Dap-seq
OMalley et al.(2016)
ATHB18_col_a 		0.708 0.632
ATHB-X
M06903_2.00 		Arabidopsis thaliana
NYAATGATTRV
BYAATCATTRN		 Dap-seq
OMalley et al.(2016)
ATHB18_colamp_a 		0.708 0.632
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OBART02G03860.1 Homeodomain 104 160

Links

Other Homeodomain family TFs
Other Oryza barthii TFs

693 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
pax6.L Xenopus laevis XB-GENE-865046 I
MDOA004921 Musca domestica MDOA004921 N
SSLN_0001114201 Schistocephalus solidus SSLN_0001114201 N
SPER_0003607601 Spirometra erinaceieuropaei SPER_0003607601 N
SPER_0001686401 Spirometra erinaceieuropaei SPER_0001686401 N
SPER_0000032601 Spirometra erinaceieuropaei SPER_0000032601 N
PXEA_0002437401 Protopolystoma xenopodis PXEA_0002437401 N
PXEA_0001865101 Protopolystoma xenopodis PXEA_0001865101 N
PEQ_0000595901 Parascaris equorum PEQ_0000595901 N
PEQ_0000587201 Parascaris equorum PEQ_0000587201 N
ECPE_0000273401 Echinostoma caproni ECPE_0000273401 N
DILT_0001312701 Diphyllobothrium latum DILT_0001312701 N
D918_03763 Trichuris suis D918_03763 N
ACEP15315 Atta cephalotes ACEP15315 N
ASIS006297 Anopheles sinensis ASIS006297 N
AQUA004623 Anopheles quadriannulatus AQUA004623 N
AEPI000661 Anopheles epiroticus AEPI000661 N
ADIR004612 Anopheles dirus ADIR004612 N
ACHR007556 Anopheles christyi ACHR007556 N
fgenesh1_kg.C_scaffold_16000108 Phytophthora capsici fgenesh1_kg.C_scaffold_16000108 N
SMU15026520 Schmidtea mediterranea SMU15026520 N
Sjc_0082940 Schistosoma japonicum Sjc_0082940 N
LOAG_09072 Loa loa LOAG_09072 N
GK24890 Drosophila willistoni FBgn0226849 N
CRE03357 Caenorhabditis remanei CRE03357 N