POPTR_0001s11380 (Populus trichocarpa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 POPTR_0001s11380 T222462_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-13
M06900_2.00 		Arabidopsis thaliana
HYAATAATTDD
HHAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB13_col_a 		0.724 0.589
ATHB-13
M06901_2.00 		Arabidopsis thaliana
NYAATAATTRW
WYAATTATTRN		 Dap-seq
OMalley et al.(2016)
ATHB13_colamp_a 		0.724 0.589
estExt_gwp_gw1.C_70211
M02220_2.00 		Physcomitrella patens
HMATNANDNN
NNHNTNATKD		 PBM
Weirauch et al.(2014)
pTH8489 		0.716 0.607
ATHB-5
M06932_2.00 		Arabidopsis thaliana
NYAATMATTND
HNAATKATTRN		 Dap-seq
OMalley et al.(2016)
ATHB5_col_a 		0.704 0.607
ATHB-5
M06933_2.00 		Arabidopsis thaliana
NYAATMATTN
NAATKATTRN		 Dap-seq
OMalley et al.(2016)
ATHB5_colamp_a 		0.704 0.607
ATHB-5
M02684_2.00 		Arabidopsis thaliana
CAATVATTGVVSV
BSBBCAATBATTG		 SELEX
Mathelier et al.(2014)
MA0110.2 		0.704 0.607
ATHB-5
M10630_2.00 		Arabidopsis thaliana
CAATVATTG
CAATBATTG		 Transfac
Matys et al.(2006)
P$ATHB5_01 		0.704 0.607
ATHB-21
M06907_2.00 		Arabidopsis thaliana
NNWHCAATWATTDN
NHAATWATTGDWNN		 Dap-seq
OMalley et al.(2016)
ATHB21_col_a 		0.695 0.589
ATHB-21
M06908_2.00 		Arabidopsis thaliana
WWDDNNNHAATWATTGDTNN
NNAHCAATWATTDNNNHHWW		 Dap-seq
OMalley et al.(2016)
ATHB21_colamp_a 		0.695 0.589
HB-5
M06924_2.00 		Arabidopsis thaliana
NNAHCAATWATTKDNNNHWWH
DWWDNNNHMAATWATTGDTNN		 Dap-seq
OMalley et al.(2016)
ATHB40_col_a 		0.694 0.589
HB-5
M06925_2.00 		Arabidopsis thaliana
HHAATWATTGDWNN
NNWHCAATWATTDD		 Dap-seq
OMalley et al.(2016)
ATHB40_colamp_a 		0.694 0.589
ATHB-53
M06934_2.00 		Arabidopsis thaliana
HMAATAATTRD
HYAATTATTKD		 Dap-seq
OMalley et al.(2016)
ATHB53_col_a 		0.689 0.571
ATHB-53
M06935_2.00 		Arabidopsis thaliana
NNWHCAATWATTDDN
NHHAATWATTGDWNN		 Dap-seq
OMalley et al.(2016)
ATHB53_colamp_a 		0.689 0.571
ATHB-6
M02040_2.00 		Arabidopsis thaliana
HATNATTDN
NHAATNATD		 PBM
Weirauch et al.(2014)
pTH7670 		0.686 0.589
ATHB-16
M02050_2.00 		Arabidopsis thaliana
YAATMATT
AATKATTR		 PBM
Weirauch et al.(2014)
pTH7270 		0.686 0.589
ATHB-6
M06909_2.00 		Arabidopsis thaliana
NNNHATKATTR
YAATMATDNNN		 Dap-seq
OMalley et al.(2016)
ATHB6_col_a 		0.686 0.589
ATHB-6
M06910_2.00 		Arabidopsis thaliana
NCAATAATTRN
NYAATTATTGN		 Dap-seq
OMalley et al.(2016)
ATHB6_colamp_a 		0.686 0.589
HAT5
M06914_2.00 		Arabidopsis thaliana
NHAATAATTDW
WHAATTATTDN		 Dap-seq
OMalley et al.(2016)
HAT5_col_a 		0.673 0.607
HAT5
M06915_2.00 		Arabidopsis thaliana
WNYAATAATTRWDN
NHWYAATTATTRNW		 Dap-seq
OMalley et al.(2016)
HAT5_colamp_a 		0.673 0.607
HAT5
M02683_2.00 		Arabidopsis thaliana
SCAATAATTNNV
BNNAATTATTGS		 SELEX
Mathelier et al.(2014)
MA0008.2 		0.673 0.607
HAT5
M10624_2.00 		Arabidopsis thaliana
YSCAATAATTNNVN
NBNNAATTATTGSR		 Transfac
Matys et al.(2006)
P$ATHB1_01 		0.673 0.607
ATHB-7
M02043_2.00 		Arabidopsis thaliana
NHWTGATTGN
NCAATCAWDN		 PBM
Weirauch et al.(2014)
pTH8090 		0.646 0.714
ATHB-7
M06911_2.00 		Arabidopsis thaliana
NHYCAATCATTSW
WSAATGATTGRDN		 Dap-seq
OMalley et al.(2016)
ATHB7_col_a 		0.646 0.714
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s11380.1 Homeodomain 15 70

Links

Other Homeodomain family TFs
Other Populus trichocarpa TFs

752 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSSHAG00000011988 Sarcophilus harrisii ENSSHAG00000011988 I 0.000
GRMZM2G069028 Zea mays GRMZM2G069028 I 0.000
GRMZM2G122537 Zea mays GRMZM2G122537 I 0.000
GRMZM2G131476 Zea mays GRMZM2G131476 I 0.000
GSMUA_Achr5G27730_001 Musa acuminata GSMUA_Achr5G27730_001 I 0.000
GSMUA_Achr6G15910_001 Musa acuminata GSMUA_Achr6G15910_001 I 0.000
MLOC_1969 Hordeum vulgare MLOC_1969 I 0.000
MLOC_54441 Hordeum vulgare MLOC_54441 I 0.000
MLOC_77955 Hordeum vulgare MLOC_77955 I 0.000
OLONG_017897 Oryza longistaminata OLONG_017897 I 0.000
POPTR_0013s06310 Populus trichocarpa POPTR_0013s06310 I 0.000
TCM_025805 Theobroma cacao TCM_025805 I 0.000
VIT_08s0056g01200 Vitis vinifera VIT_08s0056g01200 I 0.000
28307.m000017 Ricinus communis 28307.m000017 I 0.000
30072.m000927 Ricinus communis 30072.m000927 I 0.000
cassava15562.m1 Manihot esculenta cassava15562.m1 I 0.000
Cucsa.336980 Cucumis sativus Cucsa.336980 I 0.000
Ciclev10021682m.g Citrus clementina Ciclev10021682m.g I 0.000
Gorai.007G346300 Gossypium raimondii Gorai.007G346300 I 0.000
orange1.1g047211m.g Citrus sinensis orange1.1g047211m.g I 0.000
SapurV1A.0163s0040 Salix purpurea SapurV1A.0163s0040 I 0.000
SapurV1A.1660s0010 Salix purpurea SapurV1A.1660s0010 I 0.000
D917_09256 Trichinella nativa D917_09256 I 0.000
CpipJ_CPIJ004950 Culex pipiens CpipJ_CPIJ004950 N 0.000
CpipJ_CPIJ019460 Culex pipiens CpipJ_CPIJ019460 N 0.000
WUBG_02918 Wuchereria bancrofti WUBG_02918 N 0.000
ADAC000821 Anopheles darlingi ADAC000821 N 0.000
Bo3g003970 Brassica oleracea Bo3g003970 N 0.000
Bo3g055280 Brassica oleracea Bo3g055280 N 0.000
BRADI1G63680 Brachypodium distachyon BRADI1G63680 N 0.000
CPIJ004950 Culex quinquefasciatus CPIJ004950 N 0.000
CPIJ019460 Culex quinquefasciatus CPIJ019460 N 0.000
EMIHUDRAFT_217694 Emiliania huxleyi EMIHUDRAFT_217694 N 0.000
EMIHUDRAFT_458874 Emiliania huxleyi EMIHUDRAFT_458874 N 0.000
ENSFALG00000010250 Ficedula albicollis ENSFALG00000010250 N 0.000
DLX3 Felis catus ENSFCAG00000002643 N 0.000
DLX1 Loxodonta africana ENSLAFG00000003551 N 0.000
DLX3 Loxodonta africana ENSLAFG00000028511 N 0.000
ENSMGAG00000010118 Meleagris gallopavo ENSMGAG00000010118 N 0.000
ENSMGAG00000016039 Meleagris gallopavo ENSMGAG00000016039 N 0.000
ENSMODG00000028843 Monodelphis domestica ENSMODG00000028843 N 0.000
ENSOANG00000010094 Ornithorhynchus anatinus ENSOANG00000010094 N 0.000
ENSPMAG00000010155 Petromyzon marinus ENSPMAG00000010155 N 0.000
ENSTGUG00000001643 Taeniopygia guttata ENSTGUG00000001643 N 0.000
F775_04825 Aegilops tauschii F775_04825 N 0.000
F775_05084 Aegilops tauschii F775_05084 N 0.000
HMEL008501 Heliconius melpomene HMEL008501 N 0.000
ISCW020503 Ixodes scapularis ISCW020503 N 0.000
LPERR08G06500 Leersia perrieri LPERR08G06500 N 0.000
M378DRAFT_56764 Amanita muscaria M378DRAFT_56764 N 0.000
MCINX006168 Melitaea cinxia MCINX006168 N 0.000
MESCA002450 Megaselia scalaris MESCA002450 N 0.000
MLOC_34121 Hordeum vulgare MLOC_34121 N 0.000
MLOC_53697 Hordeum vulgare MLOC_53697 N 0.000
MTR_4g088065 Medicago truncatula MTR_4g088065 N 0.000
OB01G45460 Oryza brachyantha OB01G45460 N 0.000
OB10G17260 Oryza brachyantha OB10G17260 N 0.000
OLONG_000500 Oryza longistaminata OLONG_000500 N 0.000
OPUNC01G25730 Oryza punctata OPUNC01G25730 N 0.000
PLEOSDRAFT_1026389 Pleurotus ostreatus PLEOSDRAFT_1026389 N 0.000
POPTR_0003s14700 Populus trichocarpa POPTR_0003s14700 N 0.000
PPA25533 Pristionchus pacificus PPA25533 N 0.000
RPRC002292 Rhodnius prolixus RPRC002292 N 0.000
SCLCIDRAFT_1213522 Scleroderma citrinum SCLCIDRAFT_1213522 N 0.000
Smp_136900 Schistosoma mansoni Smp_136900 N 0.000
SPBR_00949 Sporothrix brasiliensis SPBR_00949 N 0.000
Traes_1AL_1444D461A1 Triticum aestivum Traes_1AL_1444D461A1 N 0.000
Traes_1AL_1444D461A Triticum aestivum Traes_1AL_1444D461A N 0.000
TRAES3BF096700070CFD_g Triticum aestivum TRAES3BF096700070CFD_g N 0.000
Traes_3DL_37D040907 Triticum aestivum Traes_3DL_37D040907 N 0.000
Traes_4BL_085791CB2 Triticum aestivum Traes_4BL_085791CB2 N 0.000
TRIUR3_08856 Triticum urartu TRIUR3_08856 N 0.000
TRIUR3_33331 Triticum urartu TRIUR3_33331 N 0.000
Afo_R012244 Aptenodytes forsteri Afo_R012244 N 0.000
Alligator_sinensis_CCG010633.1 Alligator sinensis Alligator_sinensis_CCG010633.1 N 0.000
Hsal_04718--NA Harpegnathos saltator Hsal_04718--NA N 0.000
Myotis_brandtii_DLX3_10017059 Myotis brandtii Myotis_brandtii_DLX3_10017059 N 0.000
cassava41170.m1 Manihot esculenta cassava41170.m1 N 0.000
fgenesh2_pg.scaffold_94000102 Branchiostoma floridae fgenesh2_pg.scaffold_94000102 N 0.000
mgf013558m Mimulus guttatus mgf013558m N 0.000
Sakowv30037727m.g Saccoglossus kowalevskii Sakowv30037727m.g N 0.000
Bostr.3148s0154 Boechera stricta Bostr.3148s0154 N 0.000
Bostr.3751s0010 Boechera stricta Bostr.3751s0010 N 0.000
Gorai.009G223100 Gossypium raimondii Gorai.009G223100 N 0.000
Gorai.N024800 Gossypium raimondii Gorai.N024800 N 0.000
Lus10005997.g Linum usitatissimum Lus10005997.g N 0.000
Lus10013960.g Linum usitatissimum Lus10013960.g N 0.000
Lus10018726.g Linum usitatissimum Lus10018726.g N 0.000
Lus10023332.g Linum usitatissimum Lus10023332.g N 0.000
MDP0000866008 Malus domestica MDP0000866008 N 0.000
Pavir.Ib00453 Panicum virgatum Pavir.Ib00453 N 0.000
Pavir.J05483 Panicum virgatum Pavir.J05483 N 0.000
CLEC001113 Cimex lectularius CLEC001113 N 0.000
CLEC003989 Cimex lectularius CLEC003989 N 0.000
HHAL000970-PA Halyomorpha halys HHAL000970-PA N 0.000
LCUP002617 Lucilia cuprina LCUP002617 N 0.000
LDEC004784 Leptinotarsa decemlineata LDEC004784 N 0.000
PK06427.1 Cannabis sativa PK06427.1 N 0.000
PK11453.1 Cannabis sativa PK11453.1 N 0.000
PDK_20s1352211g006 Phoenix dactylifera PDK_20s1352211g006 N 0.000
AALB010774 Anopheles albimanus AALB010774 N 0.000
AATE010517 Anopheles atroparvus AATE010517 N 0.000
ACHR009406 Anopheles christyi ACHR009406 N 0.000
ACOM023178 Anopheles coluzzii ACOM023178 N 0.000
ACOM031313 Anopheles coluzzii ACOM031313 N 0.000
ACUA017712 Anopheles culicifacies ACUA017712 N 0.000
ACUA018515 Anopheles culicifacies ACUA018515 N 0.000
AEPI000126 Anopheles epiroticus AEPI000126 N 0.000
AEPI002968 Anopheles epiroticus AEPI002968 N 0.000
AFAF008679 Anopheles farauti AFAF008679 N 0.000
AFUN007608 Anopheles funestus AFUN007608 N 0.000
AMAM014256 Anopheles maculatus AMAM014256 N 0.000
AMEC006413 Anopheles melas AMEC006413 N 0.000
AMEC007961 Anopheles melas AMEC007961 N 0.000
AMEM017070 Anopheles merus AMEM017070 N 0.000
AMIN011087 Anopheles minimus AMIN011087 N 0.000
AQUA001991 Anopheles quadriannulatus AQUA001991 N 0.000
ASIS018452 Anopheles sinensis ASIS018452 N 0.000
ASIS020685 Anopheles sinensis ASIS020685 N 0.000
ASTEI02549 Anopheles stephensi ASTEI02549 N 0.000
LLOJ002764 Lutzomyia longipalpis LLOJ002764 N 0.000
A_05714 Schistosoma haematobium A_05714 N 0.000
ANCCAN_03409 Ancylostoma caninum ANCCAN_03409 N 0.000
ANCCAN_11057 Ancylostoma caninum ANCCAN_11057 N 0.000
ANCDUO_08183 Ancylostoma duodenale ANCDUO_08183 N 0.000
BTMF_0000360801 Brugia timori BTMF_0000360801 N 0.000
DICVIV_11023 Dictyocaulus viviparus DICVIV_11023 N 0.000
ECPE_0001015501 Echinostoma caproni ECPE_0001015501 N 0.000
EEL_0000211501 Elaeophora elaphi EEL_0000211501 N 0.000
EVEC_0000608301 Enterobius vermicularis EVEC_0000608301 N 0.000
EVEC_0001263401 Enterobius vermicularis EVEC_0001263401 N 0.000
GPUH_0000517501 Gongylonema pulchrum GPUH_0000517501 N 0.000
GPUH_0002121901 Gongylonema pulchrum GPUH_0002121901 N 0.000
Hba_17036 Heterorhabditis bacteriophora Hba_17036 N 0.000
nLs.2.1.2.g07663 Litomosoides sigmodontis nLs.2.1.2.g07663 N 0.000
nOo.2.0.1.g04758 Onchocerca ochengi nOo.2.0.1.g04758 N 0.000
nOo.2.0.1.g09965 Onchocerca ochengi nOo.2.0.1.g09965 N 0.000
nRc.2.0.1.g40851 Romanomermis culicivorax nRc.2.0.1.g40851 N 0.000
PXEA_0001679301 Protopolystoma xenopodis PXEA_0001679301 N 0.000
SBAD_0000398601 Soboliphyme baturini SBAD_0000398601 N 0.000
scaffold54-EXSNAP2012.71 Pristionchus exspectatus scaffold54-EXSNAP2012.71 N 0.000
SCUD_0001639501 Schistosoma curassoni SCUD_0001639501 N 0.000
SCUD_0001847001 Schistosoma curassoni SCUD_0001847001 N 0.000
SCUD_0002346201 Schistosoma curassoni SCUD_0002346201 N 0.000
SMRZ_0001858401 Schistosoma margrebowiei SMRZ_0001858401 N 0.000
SMTD_0001724601 Schistosoma mattheei SMTD_0001724601 N 0.000
SPER_0000821201 Spirometra erinaceieuropaei SPER_0000821201 N 0.000
SPER_0001680701 Spirometra erinaceieuropaei SPER_0001680701 N 0.000
SROB_0000877601 Schistosoma rodhaini SROB_0000877601 N 0.000
SROB_0001224301 Schistosoma rodhaini SROB_0001224301 N 0.000
SVUK_0001919201 Strongylus vulgaris SVUK_0001919201 N 0.000
TELCIR_17471 Teladorsagia circumcincta TELCIR_17471 N 0.000
TRE_0000521801 Trichobilharzia regenti TRE_0000521801 N 0.000
TRE_0000614101 Trichobilharzia regenti TRE_0000614101 N 0.000
TRE_0002045401 Trichobilharzia regenti TRE_0002045401 N 0.000