POPTR_0011s11510 (Populus trichocarpa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 POPTR_0011s11510 T222556_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.722 0.614
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.722 0.614
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.722 0.596
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.722 0.596
ATHB-12
M00865_2.00 		Arabidopsis thaliana
NNNNNNNN
NNNNNNNN		 PBM
Franco-Zorrilla et al.(2014)
ATHB12 		0.631 0.561
ATHB-12
M02045_2.00 		Arabidopsis thaliana
BHWWWWWWDV
BHWWWWWWDV		 PBM
Weirauch et al.(2014)
pTH7207 		0.631 0.561
ATHB-51
M00867_2.00 		Arabidopsis thaliana
ATWATKNN
NNMATWAT		 PBM
Franco-Zorrilla et al.(2014)
ATHB51 		0.626 0.526
ATHB-51
M06927_2.00 		Arabidopsis thaliana
DNCAATAATTGAD
HTCAATTATTGNH		 Dap-seq
OMalley et al.(2016)
LMI1_col_a 		0.626 0.526
ATHB-51
M06928_2.00 		Arabidopsis thaliana
NDNCAATAATTGA
TCAATTATTGNHN		 Dap-seq
OMalley et al.(2016)
LMI1_colamp_a 		0.626 0.526
ATHB-22
M02041_2.00 		Arabidopsis thaliana
NNATAATWWWNNN
NNNWWWATTATNN		 PBM
Weirauch et al.(2014)
pTH5883 		0.623 0.474
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0011s11510.1 Homeodomain 17 73

Links

Other Homeodomain family TFs
Other Populus trichocarpa TFs

193 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OMERI06G04590 Oryza meridionalis OMERI06G04590 N
Gorai.006G250100 Gossypium raimondii Gorai.006G250100 N
Gorai.006G250000 Gossypium raimondii Gorai.006G250000 N
Gorai.006G249900 Gossypium raimondii Gorai.006G249900 N
Ca_17354 Cicer arietinum Ca_17354 N
PGSC0003DMG400044919 Solanum tuberosum PGSC0003DMG400044919 N
ORUFI08G15950 Oryza rufipogon ORUFI08G15950 N
ORUFI06G04020 Oryza rufipogon ORUFI06G04020 N
ORGLA06G0037100 Oryza glaberrima ORGLA06G0037100 N
OPUNC06G03800 Oryza punctata OPUNC06G03800 N
ONIVA06G20210 Oryza nivara ONIVA06G20210 N
ONIVA03G12480 Oryza nivara ONIVA03G12480 N
BGIOSGA027003 Oryza indica BGIOSGA027003 N
OGLUM08G14830 Oryza glumaepatula OGLUM08G14830 N
OGLUM06G04110 Oryza glumaepatula OGLUM06G04110 N
OBART08G14070 Oryza barthii OBART08G14070 N
OBART06G03990 Oryza barthii OBART06G03990 N
MTR_2g438180 Medicago truncatula MTR_2g438180 N
LPERR06G03670 Leersia perrieri LPERR06G03670 N
GLYMA15G17100 Glycine max GLYMA15G17100 N
GLYMA15G17090 Glycine max GLYMA15G17090 N
GLYMA09G05860 Glycine max GLYMA09G05860 N
GLYMA09G05850 Glycine max GLYMA09G05850 N
GLYMA09G05840 Glycine max GLYMA09G05840 N