TCM_026907 (Theobroma cacao)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 TCM_026907 T223921_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-9
M06898_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
PHV_col_a 		0.802 0.930
ATHB-9
M02682_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 SELEX
Mathelier et al.(2014)
MA0573.1 		0.802 0.930
ATHB-9
M10623_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 Transfac
Matys et al.(2006)
P$ATHB9_01 		0.802 0.930
ATHB-15
M00864_2.00 		Arabidopsis thaliana
AATAATTACT
AGTAATTATT		 PBM
Franco-Zorrilla et al.(2014)
ICU4 		0.797 0.895
ATHB-15
M06899_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
ATHB15_col_a 		0.797 0.895
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOY25492 Homeodomain 3 63
EOY25494 Homeodomain 17 77
EOY25495 Homeodomain 17 77
EOY25496 Homeodomain 17 77
EOY25497 Homeodomain 17 77

Links

Other Homeodomain family TFs
Other Theobroma cacao TFs

336 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
IRF9 Ochotona princeps ENSOPRG00000018909 D
Irf9 Mus musculus ENSMUSG00000002325 D
IRF9 Homo sapiens ENSG00000213928 D
IRF9 Sus scrofa ENSSSCG00000002002 D
irf9 Tetraodon nigroviridis ENSTNIG00000008698 I
IRF9 Procavia capensis ENSPCAG00000015500 I
ENSPFOG00000021810 Poecilia formosa ENSPFOG00000021810 I
ENSPPYG00000005686 Pongo abelii ENSPPYG00000005686 I
IRF9 Pan troglodytes ENSPTRG00000034494 I
IRF9 Pteropus vampyrus ENSPVAG00000007716 I
Irf9 Rattus norvegicus ENSRNOG00000019478 I
ENSSHAG00000001872 Sarcophilus harrisii ENSSHAG00000001872 I
ENSSTOG00000023450 Ictidomys tridecemlineatus ENSSTOG00000023450 I
ENSONIG00000006624 Oreochromis niloticus ENSONIG00000006624 I
irf9 Takifugu rubripes ENSTRUG00000017722 I
ENSTSYG00000007445 Tarsius syrichta ENSTSYG00000007445 I
IRF9 Tursiops truncatus ENSTTRG00000008624 I
Alligator_sinensis_CCG003072.1 Alligator sinensis Alligator_sinensis_CCG003072.1 I
ENSBTAP00000044267-D1 Bos grunniens ENSBTAP00000044267-D1 I
ENSP00000380073 Macaca fascicularis ENSP00000380073 I
Myotis_brandtii_IRF9_10003711 Myotis brandtii Myotis_brandtii_IRF9_10003711 I
Ogr03980 Ophisaurus gracilis Ogr03980 I
Pvit_14926 Pogona vitticeps Pvit_14926 I
IRF9 Loxodonta africana ENSLAFG00000026182 I
ENSAMEG00000016347 Ailuropoda melanoleuca ENSAMEG00000016347 I
IRF9 Bos taurus ENSBTAG00000005816 I
IRF9 Canis familiaris ENSCAFG00000012007 I
IRF9 Callithrix jacchus ENSCJAG00000007065 I
IRF9 Cavia porcellus ENSCPOG00000026474 I
ENSCSAG00000016071 Chlorocebus sabaeus ENSCSAG00000016071 I
IRF9 Equus caballus ENSECAG00000024429 I
IRF9 Felis catus ENSFCAG00000018849 I
IRF9 Gorilla gorilla ENSGGOG00000016046 I
irf9 Oryzias latipes ENSORLG00000013335 I
ENSMEUG00000010784 Macropus eugenii ENSMEUG00000010784 I
IRF9 Myotis lucifugus ENSMLUG00000025255 I
IRF9 Monodelphis domestica ENSMODG00000003368 I
ENSMPUG00000005961 Mustela putorius furo ENSMPUG00000005961 I
ENSNLEG00000015294 Nomascus leucogenys ENSNLEG00000015294 I
ENSOARG00000019201 Ovis aries ENSOARG00000019201 I
IRF9 Oryctolagus cuniculus ENSOCUG00000028186 I
IRF9 Otolemur garnettii ENSOGAG00000026670 I
ENSACAG00000003946 Anolis carolinensis ENSACAG00000003946 I