Alligator_sinensis_CCG014468.1 (Alligator sinensis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Alligator_sinensis_CCG014468.1 T225244_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.744 0.370
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.744 0.370
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.744 0.370
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.744 0.370
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.744 0.370
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.744 0.370
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.744 0.370
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.744 0.370
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.744 0.370
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.719 0.391
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.719 0.391
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.719 0.391
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG014468.1 Homeodomain 137 182

Links

Other Homeodomain family TFs
Other Alligator sinensis TFs

1234 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PITX1 Homo sapiens ENSG00000069011 D 0.749
CRX Homo sapiens ENSG00000105392 D 0.680
DLX1 Homo sapiens ENSG00000144355 D 0.698
Pitx1 Mus musculus ENSMUSG00000021506 D 0.707
Otx2 Mus musculus ENSMUSG00000021848 D 0.694
Pitx3 Mus musculus ENSMUSG00000025229 D 0.694
Crx Mus musculus ENSMUSG00000041578 D 0.702
Hoxb8 Mus musculus ENSMUSG00000056648 D 0.615
ACEP26487 Atta cephalotes ACEP26487 I 0.702
ADAC003417 Anopheles darlingi ADAC003417 I 0.698
CapteG187461 Capitella teleta CapteG187461 I 0.728
CJA38412 Caenorhabditis japonica CJA38412 I 0.698
ENSAPLG00000000623 Anas platyrhynchos ENSAPLG00000000623 I 0.723
ENSCHOG00000002762 Choloepus hoffmanni ENSCHOG00000002762 I 0.698
ENSCHOG00000002853 Choloepus hoffmanni ENSCHOG00000002853 I 0.698
ENSCHOG00000004334 Choloepus hoffmanni ENSCHOG00000004334 I 0.698
DLX1 Choloepus hoffmanni ENSCHOG00000006718 I 0.698
ENSCING00000013809 Ciona intestinalis ENSCING00000013809 I 0.702
ENSECAG00000023678 Equus caballus ENSECAG00000023678 I 0.000
HOXB3 Echinops telfairi ENSETEG00000007761 I 0.691
DLX1 Echinops telfairi ENSETEG00000017573 I 0.698
ENSMEUG00000002781 Macropus eugenii ENSMEUG00000002781 I 0.702
ENSMEUG00000012817 Macropus eugenii ENSMEUG00000012817 I 0.698
ENSMGAG00000010010 Meleagris gallopavo ENSMGAG00000010010 I 0.698
ENSMICG00000002512 Microcebus murinus ENSMICG00000002512 I 0.639
ENSMICG00000004221 Microcebus murinus ENSMICG00000004221 I 0.665
ENSMLUG00000025271 Myotis lucifugus ENSMLUG00000025271 I 0.698
Rhox9 Mus musculus ENSMUSG00000068048 I 0.663
ENSMUSG00000097436 Mus musculus ENSMUSG00000097436 I 0.663
DLX5 Ochotona princeps ENSOPRG00000001891 I 0.698
DLX1 Procavia capensis ENSPCAG00000008892 I 0.698
ENSPMAG00000010239 Petromyzon marinus ENSPMAG00000010239 I 0.687
BARX2 Tupaia belangeri ENSTBEG00000000641 I 0.699
ENSTBEG00000005238 Tupaia belangeri ENSTBEG00000005238 I 0.718
ENSTGUG00000004229 Taeniopygia guttata ENSTGUG00000004229 I 0.702
BARX2 Vicugna pacos ENSVPAG00000010480 I 0.699
GH24924 Drosophila grimshawi FBgn0132379 I 0.663
GB40331 Apis mellifera GB40331 I 0.702
GB42226 Apis mellifera GB42226 I 0.702
HMEL006348 Heliconius melpomene HMEL006348 I 0.673
HMEL008500 Heliconius melpomene HMEL008500 I 0.698
ISCW005275 Ixodes scapularis ISCW005275 I 0.710
ISCW017713 Ixodes scapularis ISCW017713 I 0.702
ISCW020504 Ixodes scapularis ISCW020504 I 0.698
MCINX001506 Melitaea cinxia MCINX001506 I 0.653
MESCA002384 Megaselia scalaris MESCA002384 I 0.685
MESCA003695 Megaselia scalaris MESCA003695 I 0.699
MESCA012524 Megaselia scalaris MESCA012524 I 0.688
ML145813a Mnemiopsis leidyi ML145813a I 0.693
PPA25532 Pristionchus pacificus PPA25532 I 0.698
RPRC011667 Rhodnius prolixus RPRC011667 I 0.694
SINV23302 Solenopsis invicta SINV23302 I 0.702
Smp_150810 Schistosoma mansoni Smp_150810 I 0.688
Afo_R006907 Aptenodytes forsteri Afo_R006907 I 0.670
Alligator_sinensis_CCG007400.1 Alligator sinensis Alligator_sinensis_CCG007400.1 I 0.698
Alligator_sinensis_CCG019716.1 Alligator sinensis Alligator_sinensis_CCG019716.1 I 0.716
30202.m000250 Ricinus communis 30202.m000250 I 0.000
e_gw.814.10.1 Branchiostoma floridae e_gw.814.10.1 I 0.702
Ocbimv22038354m.g Octopus bimaculoides Ocbimv22038354m.g I 0.698
Sakowv30000867m.g Saccoglossus kowalevskii Sakowv30000867m.g I 0.000
CLEC003990 Cimex lectularius CLEC003990 I 0.698
CLEC007143 Cimex lectularius CLEC007143 I 0.694
LCUP010259 Lucilia cuprina LCUP010259 I 0.694
LDEC001249 Leptinotarsa decemlineata LDEC001249 I 0.698
LDEC010767 Leptinotarsa decemlineata LDEC010767 I 0.702
Sjc_0039470 Schistosoma japonicum Sjc_0039470 I 0.696
Sjc_0051960 Schistosoma japonicum Sjc_0051960 I 0.688
Sjc_0075360 Schistosoma japonicum Sjc_0075360 I 0.680
SNAPOd2T00009387001 Oikopleura dioica SNAPOd2T00009387001 I 0.702
SNAPOd2T00020544001 Oikopleura dioica SNAPOd2T00020544001 I 0.688
nkx2-4 Xenopus tropicalis XB-GENE-487481 I 0.000
en1 Xenopus tropicalis XB-GENE-5737237 I 0.691
AALB000327 Anopheles albimanus AALB000327 I 0.702
AALB005001 Anopheles albimanus AALB005001 I 0.698
AARA005138 Anopheles arabiensis AARA005138 I 0.702
ACHR004287 Anopheles christyi ACHR004287 I 0.702
ACOM031312 Anopheles coluzzii ACOM031312 I 0.698
ACUA013183 Anopheles culicifacies ACUA013183 I 0.698
ADIR006768 Anopheles dirus ADIR006768 I 0.702
AEPI004828 Anopheles epiroticus AEPI004828 I 0.702
AFUN001295 Anopheles funestus AFUN001295 I 0.702
AFUN007609 Anopheles funestus AFUN007609 I 0.698
AMAM003654 Anopheles maculatus AMAM003654 I 0.000
AMAM009154 Anopheles maculatus AMAM009154 I 0.702
AMEC011816 Anopheles melas AMEC011816 I 0.694
AMEC016887 Anopheles melas AMEC016887 I 0.702
AMIN005749 Anopheles minimus AMIN005749 I 0.640
AMIN006279 Anopheles minimus AMIN006279 I 0.702
AMIN011086 Anopheles minimus AMIN011086 I 0.698
AQUA000678 Anopheles quadriannulatus AQUA000678 I 0.702
ASTEI02548 Anopheles stephensi ASTEI02548 I 0.698
BGLB001705 Biomphalaria glabrata BGLB001705 I 0.702
BGLB005976 Biomphalaria glabrata BGLB005976 I 0.708
A_07396 Schistosoma haematobium A_07396 I 0.670
A_07699 Schistosoma haematobium A_07699 I 0.688
ANCCEY_06024 Ancylostoma ceylanicum ANCCEY_06024 I 0.698
ANCCEY_13939 Ancylostoma ceylanicum ANCCEY_13939 I 0.688
ANCDUO_09759 Ancylostoma duodenale ANCDUO_09759 I 0.702
augustus_masked-nMf.1.1.scaf20573-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf20573-processed-gene-0.0 I 0.655
CGOC_0000387301 Cylicostephanus goldi CGOC_0000387301 I 0.702
csin105841 Clonorchis sinensis csin105841 I 0.699
D915_08446 Fasciola hepatica D915_08446 I 0.688
D918_03366 Trichuris suis D918_03366 I 0.676
DILT_0000834901 Diphyllobothrium latum DILT_0000834901 I 0.730
EVEC_0000238601 Enterobius vermicularis EVEC_0000238601 I 0.617
GPLIN_000434400 Globodera pallida GPLIN_000434400 I 0.688
GPLIN_001127900 Globodera pallida GPLIN_001127900 I 0.704
Hba_14264 Heterorhabditis bacteriophora Hba_14264 I 0.668
HPLM_0000640301 Haemonchus placei HPLM_0000640301 I 0.701
HPLM_0001802901 Haemonchus placei HPLM_0001802901 I 0.676
L893_g29073 Steinernema glaseri L893_g29073 I 0.708
MhA1_Contig1070.frz3.gene23 Meloidogyne hapla MhA1_Contig1070.frz3.gene23 I 0.702
MhA1_Contig290.frz3.gene10 Meloidogyne hapla MhA1_Contig290.frz3.gene10 I 0.694
MhA1_Contig541.frz3.gene24 Meloidogyne hapla MhA1_Contig541.frz3.gene24 I 0.698
nAv.1.0.1.g02632 Acanthocheilonema viteae nAv.1.0.1.g02632 I 0.656
nDi.2.2.2.g11780 Dirofilaria immitis nDi.2.2.2.g11780 I 0.725
OESDEN_08182 Oesophagostomum dentatum OESDEN_08182 I 0.688
OFLC_0001568201 Onchocerca flexuosa OFLC_0001568201 I 0.730
PXEA_0000709901 Protopolystoma xenopodis PXEA_0000709901 I 0.694
PXEA_0000830701 Protopolystoma xenopodis PXEA_0000830701 I 0.668
SBAD_0000184901 Soboliphyme baturini SBAD_0000184901 I 0.718
scaffold54-EXSNAP2012.70 Pristionchus exspectatus scaffold54-EXSNAP2012.70 I 0.698
SCUD_0000012401 Schistosoma curassoni SCUD_0000012401 I 0.688
SCUD_0001148701 Schistosoma curassoni SCUD_0001148701 I 0.680
SMTD_0000630101 Schistosoma mattheei SMTD_0000630101 I 0.689
SMTD_0001421101 Schistosoma mattheei SMTD_0001421101 I 0.688
SROB_0000568701 Schistosoma rodhaini SROB_0000568701 I 0.704
SROB_0000845601 Schistosoma rodhaini SROB_0000845601 I 0.688
SROB_0001170301 Schistosoma rodhaini SROB_0001170301 I 0.696
SVUK_0000982701 Strongylus vulgaris SVUK_0000982701 I 0.699
TCNE_0000805901 Toxocara canis TCNE_0000805901 I 0.617
TELCIR_15720 Teladorsagia circumcincta TELCIR_15720 I 0.688
TMUE_s0047002700 Trichuris muris TMUE_s0047002700 I 0.698
TMUE_s0096002400 Trichuris muris TMUE_s0096002400 I 0.656
TRE_0000552801 Trichobilharzia regenti TRE_0000552801 I 0.662
TRE_0000840901 Trichobilharzia regenti TRE_0000840901 I 0.668
WUBG_08134 Wuchereria bancrofti WUBG_08134 N 0.000
ENSDORG00000008440 Dipodomys ordii ENSDORG00000008440 N 0.000
HOXB8 Monodelphis domestica ENSMODG00000009593 N 0.000
Rhox2h Mus musculus ENSMUSG00000079627 N 0.000
Rhox2g Mus musculus ENSMUSG00000079629 N 0.000
Rhox2c Mus musculus ENSMUSG00000079637 N 0.000
Rhox2f Mus musculus ENSMUSG00000095741 N 0.000
FVEG_06689 Fusarium verticillioides FVEG_06689 N 0.000
MESCA004913 Megaselia scalaris MESCA004913 N 0.000
Cmyd_10006886 Chelonia mydas Cmyd_10006886 N 0.000
Pvit_07422 Pogona vitticeps Pvit_07422 N 0.000
Contig17646.0.g10 Oxytricha trifallax Contig17646.0.g10 N 0.000
SNAPOd2T00004995001 Oikopleura dioica SNAPOd2T00004995001 N 0.000
XP_002154082.1 Hydra magnipapillata XP_002154082.1 N 0.000
AFUN010407 Anopheles funestus AFUN010407 N 0.000
ACAC_0001096101 Angiostrongylus cantonensis ACAC_0001096101 N 0.000
ACOC_0000018801 Angiostrongylus costaricensis ACOC_0000018801 N 0.000
ANCCAN_01052 Ancylostoma caninum ANCCAN_01052 N 0.000
D915_06583 Fasciola hepatica D915_06583 N 0.000
EEL_0000283301 Elaeophora elaphi EEL_0000283301 N 0.000
genemark-nMf.1.1.scaf08601-processed-gene-0.1 Meloidogyne floridensis genemark-nMf.1.1.scaf08601-processed-gene-0.1 N 0.000
HPLM_0001305101 Haemonchus placei HPLM_0001305101 N 0.000
L892_g18619 Steinernema scapterisci L892_g18619 N 0.000
L893_g7450 Steinernema glaseri L893_g7450 N 0.000
L898_g16919 Steinernema monticolum L898_g16919 N 0.000
L898_g696 Steinernema monticolum L898_g696 N 0.000
PXEA_0000194701 Protopolystoma xenopodis PXEA_0000194701 N 0.000
PXEA_0001806501 Protopolystoma xenopodis PXEA_0001806501 N 0.000
SMTD_0002268201 Schistosoma mattheei SMTD_0002268201 N 0.000
TELCIR_03058 Teladorsagia circumcincta TELCIR_03058 N 0.000
TELCIR_25656 Teladorsagia circumcincta TELCIR_25656 N 0.000
TRE_0000662901 Trichobilharzia regenti TRE_0000662901 N 0.000