Ca_12539 (Cicer arietinum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Ca_12539 T225449_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HAT5
M06914_2.00 		Arabidopsis thaliana
NHAATAATTDW
WHAATTATTDN		 Dap-seq
OMalley et al.(2016)
HAT5_col_a 		0.858 0.965
HAT5
M06915_2.00 		Arabidopsis thaliana
WNYAATAATTRWDN
NHWYAATTATTRNW		 Dap-seq
OMalley et al.(2016)
HAT5_colamp_a 		0.858 0.965
HAT5
M02683_2.00 		Arabidopsis thaliana
SCAATAATTNNV
BNNAATTATTGS		 SELEX
Mathelier et al.(2014)
MA0008.2 		0.858 0.965
HAT5
M10624_2.00 		Arabidopsis thaliana
YSCAATAATTNNVN
NBNNAATTATTGSR		 Transfac
Matys et al.(2006)
P$ATHB1_01 		0.858 0.965
estExt_gwp_gw1.C_70211
M02220_2.00 		Physcomitrella patens
HMATNANDNN
NNHNTNATKD		 PBM
Weirauch et al.(2014)
pTH8489 		0.813 0.825
ATHB-16
M02050_2.00 		Arabidopsis thaliana
YAATMATT
AATKATTR		 PBM
Weirauch et al.(2014)
pTH7270 		0.813 0.807
ATHB-6
M02040_2.00 		Arabidopsis thaliana
HATNATTDN
NHAATNATD		 PBM
Weirauch et al.(2014)
pTH7670 		0.813 0.789
ATHB-6
M06909_2.00 		Arabidopsis thaliana
NNNHATKATTR
YAATMATDNNN		 Dap-seq
OMalley et al.(2016)
ATHB6_col_a 		0.813 0.789
ATHB-6
M06910_2.00 		Arabidopsis thaliana
NCAATAATTRN
NYAATTATTGN		 Dap-seq
OMalley et al.(2016)
ATHB6_colamp_a 		0.813 0.789
ATHB-13
M06900_2.00 		Arabidopsis thaliana
HYAATAATTDD
HHAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB13_col_a 		0.796 0.772
ATHB-13
M06901_2.00 		Arabidopsis thaliana
NYAATAATTRW
WYAATTATTRN		 Dap-seq
OMalley et al.(2016)
ATHB13_colamp_a 		0.796 0.772
ATHB-5
M06932_2.00 		Arabidopsis thaliana
NYAATMATTND
HNAATKATTRN		 Dap-seq
OMalley et al.(2016)
ATHB5_col_a 		0.796 0.772
ATHB-5
M06933_2.00 		Arabidopsis thaliana
NYAATMATTN
NAATKATTRN		 Dap-seq
OMalley et al.(2016)
ATHB5_colamp_a 		0.796 0.772
ATHB-5
M02684_2.00 		Arabidopsis thaliana
CAATVATTGVVSV
BSBBCAATBATTG		 SELEX
Mathelier et al.(2014)
MA0110.2 		0.796 0.772
ATHB-5
M10630_2.00 		Arabidopsis thaliana
CAATVATTG
CAATBATTG		 Transfac
Matys et al.(2006)
P$ATHB5_01 		0.796 0.772
ATHB-21
M06907_2.00 		Arabidopsis thaliana
NNWHCAATWATTDN
NHAATWATTGDWNN		 Dap-seq
OMalley et al.(2016)
ATHB21_col_a 		0.723 0.667
ATHB-21
M06908_2.00 		Arabidopsis thaliana
WWDDNNNHAATWATTGDTNN
NNAHCAATWATTDNNNHHWW		 Dap-seq
OMalley et al.(2016)
ATHB21_colamp_a 		0.723 0.667
HB-5
M06924_2.00 		Arabidopsis thaliana
NNAHCAATWATTKDNNNHWWH
DWWDNNNHMAATWATTGDTNN		 Dap-seq
OMalley et al.(2016)
ATHB40_col_a 		0.722 0.684
HB-5
M06925_2.00 		Arabidopsis thaliana
HHAATWATTGDWNN
NNWHCAATWATTDD		 Dap-seq
OMalley et al.(2016)
ATHB40_colamp_a 		0.722 0.684
ATHB-53
M06934_2.00 		Arabidopsis thaliana
HMAATAATTRD
HYAATTATTKD		 Dap-seq
OMalley et al.(2016)
ATHB53_col_a 		0.718 0.649
ATHB-53
M06935_2.00 		Arabidopsis thaliana
NNWHCAATWATTDDN
NHHAATWATTGDWNN		 Dap-seq
OMalley et al.(2016)
ATHB53_colamp_a 		0.718 0.649
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.657 0.807
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.657 0.807
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.637 0.772
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.637 0.772
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ca_12539 Homeodomain 67 123

Links

Other Homeodomain family TFs
Other Cicer arietinum TFs

803 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OESDEN_01187 Oesophagostomum dentatum OESDEN_01187 N
L893_g27010 Steinernema glaseri L893_g27010 N
L898_g20016 Steinernema monticolum L898_g20016 N
maker-nMf.1.1.scaf01761-augustus-gene-0.9 Meloidogyne floridensis maker-nMf.1.1.scaf01761-augustus-gene-0.9 N
MhA1_Contig735.frz3.gene1 Meloidogyne hapla MhA1_Contig735.frz3.gene1 N
nAv.1.0.1.g02384 Acanthocheilonema viteae nAv.1.0.1.g02384 N
NBR_0000578501 Nippostrongylus brasiliensis NBR_0000578501 N
nDi.2.2.2.g07282 Dirofilaria immitis nDi.2.2.2.g07282 N
NECAME_15736 Necator americanus NECAME_15736 N
nLs.2.1.2.g05829 Litomosoides sigmodontis nLs.2.1.2.g05829 N
nOo.2.0.1.g07845 Onchocerca ochengi nOo.2.0.1.g07845 N
L892_g19776 Steinernema scapterisci L892_g19776 N
OFLC_0001085001 Onchocerca flexuosa OFLC_0001085001 N
PTRK_0000587000 Parastrongyloides trichosuri PTRK_0000587000 N
RSKR_0000471700 Rhabditophanes kr3021 RSKR_0000471700 N
scaffold233-EXSNAP2012.27 Pristionchus exspectatus scaffold233-EXSNAP2012.27 N
SMUV_0000604801 Syphacia muris SMUV_0000604801 N
SPAL_0001051100 Strongyloides papillosus SPAL_0001051100 N
SSTP_0000225200 Strongyloides stercoralis SSTP_0000225200 N
SVE_1773400 Strongyloides venezuelensis SVE_1773400 N
TCLT_0000462301 Thelazia callipaeda TCLT_0000462301 N
ASU_08046 Ascaris suum ASU_08046 N
Bm1869 Brugia malayi Bm1869 N
CBG15998 Caenorhabditis briggsae CBG15998 N
CBN08978 Caenorhabditis brenneri CBN08978 N
CJA01357 Caenorhabditis japonica CJA01357 N
CRE16681 Caenorhabditis remanei CRE16681 N
LOAG_00514 Loa loa LOAG_00514 N
PPA07067 Pristionchus pacificus PPA07067 N
WBGene00240385 Onchocerca volvulus WBGene00240385 N
ANCDUO_01146 Ancylostoma duodenale ANCDUO_01146 N
WUBG_03352 Wuchereria bancrofti WUBG_03352 N
BTMF_0001647701 Brugia timori BTMF_0001647701 N
BXY_1412700 Bursaphelenchus xylophilus BXY_1412700 N
DME_0000449401 Dracunculus medinensis DME_0000449401 N
EEL_0000398501 Elaeophora elaphi EEL_0000398501 N
EVEC_0001107401 Enterobius vermicularis EVEC_0001107401 N
GPLIN_001255200 Globodera pallida GPLIN_001255200 N
GPUH_0001206901 Gongylonema pulchrum GPUH_0001206901 N
L596_g5423 Steinernema carpocapsae L596_g5423 N
L889_g7801 Steinernema feltiae L889_g7801 N