Cla019819 (Citrullus lanatus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Cla019819 T225627_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-9
M06898_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
PHV_col_a 		0.801 0.930
ATHB-9
M02682_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 SELEX
Mathelier et al.(2014)
MA0573.1 		0.801 0.930
ATHB-9
M10623_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 Transfac
Matys et al.(2006)
P$ATHB9_01 		0.801 0.930
ATHB-15
M00864_2.00 		Arabidopsis thaliana
AATAATTACT
AGTAATTATT		 PBM
Franco-Zorrilla et al.(2014)
ICU4 		0.796 0.877
ATHB-15
M06899_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
ATHB15_col_a 		0.796 0.877
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla019819 Homeodomain 16 76

Links

Other Homeodomain family TFs
Other Citrullus lanatus TFs

335 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PGSC0003DMG400045042 Solanum tuberosum PGSC0003DMG400045042 I
Solyc10g083560.1 Solanum lycopersicum Solyc10g083560.1 I
Cucsa.083150 Cucumis sativus Cucsa.083150 N
LjSGA_035548.1 Lotus japonicus LjSGA_035548.1 N
SapurV1A.0154s0220 Salix purpurea SapurV1A.0154s0220 N
orange1.1g039696m.g Citrus sinensis orange1.1g039696m.g N
MDP0000833641 Malus domestica MDP0000833641 N
MDP0000195376 Malus domestica MDP0000195376 N
Lus10023873.g Linum usitatissimum Lus10023873.g N
Lus10014376.g Linum usitatissimum Lus10014376.g N
Gorai.009G407200 Gossypium raimondii Gorai.009G407200 N
Gorai.002G241800 Gossypium raimondii Gorai.002G241800 N
Gorai.002G159400 Gossypium raimondii Gorai.002G159400 N
evm.TU.supercontig_5.71 Carica papaya evm.TU.supercontig_5.71 N
Eucgr.K02071 Eucalyptus grandis Eucgr.K02071 N
Ciclev10012757m.g Citrus clementina Ciclev10012757m.g N
Cucsa.378470 Cucumis sativus Cucsa.378470 N
GLYMA03G34970 Glycine max GLYMA03G34970 N
cassava32861.m1 Manihot esculenta cassava32861.m1 N
cassava21723.m1 Manihot esculenta cassava21723.m1 N
29092.m000462 Ricinus communis 29092.m000462 N
Cla018653 Citrullus lanatus Cla018653 N
Cla017994 Citrullus lanatus Cla017994 N
HRD Vitis vinifera VIT_08s0007g03810 N
TCM_022462 Theobroma cacao TCM_022462 N
PRUPE_ppa020711mg Prunus persica PRUPE_ppa020711mg N
POPTR_0016s02010 Populus trichocarpa POPTR_0016s02010 N
POPTR_0006s02180 Populus trichocarpa POPTR_0006s02180 N
GLYMA19G37670 Glycine max GLYMA19G37670 N
GLYMA15G02900 Glycine max GLYMA15G02900 N