ENSBTAP00000001222-D1 (Bos grunniens)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 ENSBTAP00000001222-D1 T225814_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Hoxc13
M00389_2.00 		Mus musculus
NTTWAYDRNN
NNYHRTWAAN		 PBM
Berger et al.(2008)
Hoxc13_3127 		0.867 1.000
HOXC13
M03129_2.00 		Homo sapiens
NTTTTATTRS
SYAATAAAAN		 SELEX
Jolma et al.(2013)
HOXC13_1 		0.867 1.000
HOXC13
M03130_2.00 		Homo sapiens
NCTCGTAAAAH
DTTTTACGAGN		 SELEX
Jolma et al.(2013)
HOXC13_2 		0.867 1.000
HOXC13
M05072_2.00 		Homo sapiens
RKTTTATKGSN
NSCMATAAAMY		 SELEX
Yin et al.(2017)
HOXC13_eDBD_HT-SELEX_1 		0.867 1.000
HOXC13
M05073_2.00 		Homo sapiens
BCTCGTAAAMH
DKTTTACGAGV		 SELEX
Yin et al.(2017)
HOXC13_eDBD_HT-SELEX_2 		0.867 1.000
HOXC13
M10680_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXC13_Q2 		0.867 1.000
HOXC13
M05074_2.00 		Homo sapiens
BCTCGTAAAAH
DTTTTACGAGV		 SELEX
Yin et al.(2017)
HOXC13_eDBD_Methyl-HT-SELEX 		0.867 1.000
Hoxa13
M00473_2.00 		Mus musculus
NTTWAYDRN
NYHRTWAAN		 PBM
Berger et al.(2008)
Hoxa13_3126 		0.862 0.930
HOXA13
M03098_2.00 		Homo sapiens
DKTTTATKRS
SYMATAAAMH		 SELEX
Jolma et al.(2013)
HOXA13_1 		0.862 0.930
HOXA13
M03099_2.00 		Homo sapiens
NCTCGTAAAHN
NDTTTACGAGN		 SELEX
Jolma et al.(2013)
HOXA13_2 		0.862 0.930
HOXA13
M03100_2.00 		Homo sapiens
DKTTTATKRS
SYMATAAAMH		 SELEX
Jolma et al.(2013)
HOXA13_3 		0.862 0.930
HOXA13
M03101_2.00 		Homo sapiens
NCTCGTAAAAH
DTTTTACGAGN		 SELEX
Jolma et al.(2013)
HOXA13_4 		0.862 0.930
HOXA13
M04977_2.00 		Homo sapiens
DTTTTATKGGB
VCCMATAAAAH		 SELEX
Yin et al.(2017)
HOXA13_eDBD_HT-SELEX_1 		0.862 0.930
HOXA13
M04978_2.00 		Homo sapiens
NCTCGTAAAHN
NDTTTACGAGN		 SELEX
Yin et al.(2017)
HOXA13_eDBD_HT-SELEX_2 		0.862 0.930
HOXA13
M04981_2.00 		Homo sapiens
DTTTTATKRSN
NSYMATAAAAH		 SELEX
Yin et al.(2017)
HOXA13_FL_HT-SELEX_1 		0.862 0.930
HOXA13
M04982_2.00 		Homo sapiens
NCTCGTAAAWH
DWTTTACGAGN		 SELEX
Yin et al.(2017)
HOXA13_FL_HT-SELEX_2 		0.862 0.930
HOXA13
M09134_2.00 		Homo sapiens
VDTWTWATKGS
SCMATWAWAHB		 Misc
Kulakovskiy et al.(2013)
HXA13_HUMAN.H11MO.0.C 		0.862 0.930
Hoxa13
M09202_2.00 		Mus musculus
VDTWTWATKGS
SCMATWAWAHB		 Misc
Kulakovskiy et al.(2013)
HXA13_MOUSE.H11MO.0.C 		0.862 0.930
HOXA13
M10653_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXA13_01 		0.862 0.930
HOXA13
M10654_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXA13_02 		0.862 0.930
HOXA13
M04979_2.00 		Homo sapiens
DTTTTATTRSN
NSYAATAAAAH		 SELEX
Yin et al.(2017)
HOXA13_eDBD_Methyl-HT-SELEX_1 		0.862 0.930
HOXA13
M04980_2.00 		Homo sapiens
NCTCGTAAAHN
NDTTTACGAGN		 SELEX
Yin et al.(2017)
HOXA13_eDBD_Methyl-HT-SELEX_2 		0.862 0.930
HOXA13
M04983_2.00 		Homo sapiens
DKTTTATTGBN
NVCAATAAAMH		 SELEX
Yin et al.(2017)
HOXA13_FL_Methyl-HT-SELEX_1 		0.862 0.930
HOXA13
M04984_2.00 		Homo sapiens
NCTCGTAAAWH
DWTTTACGAGN		 SELEX
Yin et al.(2017)
HOXA13_FL_Methyl-HT-SELEX_2 		0.862 0.930
HOXD13
M00299_2.00 		Homo sapiens
NTTWAYDDN
NHHRTWAAN		 PBM
Barrera et al.(2016)
HOXD13_REF 		0.834 0.860
Hoxd13
M00394_2.00 		Mus musculus
NWTHRYDDN
NHHRYDAWN		 PBM
Berger et al.(2008)
Hoxd13_2356 		0.834 0.860
HOXD13
M03141_2.00 		Homo sapiens
DTTTTATKRS
SYMATAAAAH		 SELEX
Jolma et al.(2013)
HOXD13_1 		0.834 0.860
HOXD13
M03142_2.00 		Homo sapiens
BCTCGTAAAAH
DTTTTACGAGV		 SELEX
Jolma et al.(2013)
HOXD13_2 		0.834 0.860
Hoxd13
M03247_2.00 		Mus musculus
DKTTTATTRS
SYAATAAAMH		 SELEX
Jolma et al.(2013)
Hoxd13_1 		0.834 0.860
Hoxd13
M03248_2.00 		Mus musculus
DDTTTAYKAGN
NCTMRTAAAHH		 SELEX
Jolma et al.(2013)
Hoxd13_2 		0.834 0.860
HOXD13
M05122_2.00 		Homo sapiens
GKTTTATKGSS
SSCMATAAAMC		 SELEX
Yin et al.(2017)
HOXD13_eDBD_HT-SELEX_1 		0.834 0.860
HOXD13
M05123_2.00 		Homo sapiens
BCTCGTAAAMH
DKTTTACGAGV		 SELEX
Yin et al.(2017)
HOXD13_eDBD_HT-SELEX_2 		0.834 0.860
HOXD13
M10689_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXD13_Q6 		0.834 0.860
HOXD13
M00295_2.00 		Homo sapiens
NTTWAYDDN
NHHRTWAAN		 PBM
Barrera et al.(2016)
HOXD13_N298S 		0.834 0.860
HOXD13
M05124_2.00 		Homo sapiens
DDTTTATTRBB
VVYAATAAAHH		 SELEX
Yin et al.(2017)
HOXD13_eDBD_Methyl-HT-SELEX_1 		0.834 0.860
HOXD13
M05125_2.00 		Homo sapiens
VCTCGTAAAAH
DTTTTACGAGB		 SELEX
Yin et al.(2017)
HOXD13_eDBD_Methyl-HT-SELEX_2 		0.834 0.860
HOXD13
M00300_2.00 		Homo sapiens
WTTTATDR
YHATAAAW		 PBM
Barrera et al.(2016)
HOXD13_S316C 		0.834 0.842
HOXD13
M00293_2.00 		Homo sapiens
NTTWAYDDNN
NNHHRTWAAN		 PBM
Barrera et al.(2016)
HOXD13_I297V 		0.834 0.842
hoxd13a
M02081_2.00 		Danio rerio
WTTTATDR
YHATAAAW		 PBM
Weirauch et al.(2014)
pTH6143 		0.832 0.825
HOXD13
M00298_2.00 		Homo sapiens
NTTWAYDDN
NHHRTWAAN		 PBM
Barrera et al.(2016)
HOXD13_R306W 		0.826 0.842
HOXD13
M00294_2.00 		Homo sapiens
THGTWAAW
WTTWACDA		 PBM
Barrera et al.(2016)
HOXD13_I322L 		0.816 0.842
HOXB13
M02092_2.00 		Homo sapiens
NTTWAYDDNN
NNHHRTWAAN		 PBM
Weirauch et al.(2014)
pTH5808 		0.713 0.807
Hoxb13
M00505_2.00 		Mus musculus
NTTWAYDDNN
NNHHRTWAAN		 PBM
Berger et al.(2008)
Hoxb13_3479 		0.713 0.807
HOXB13
M03175_2.00 		Homo sapiens
DTTTTATKGG
CCMATAAAAH		 SELEX
Jolma et al.(2013)
HOXB13_1 		0.713 0.807
HOXB13
M03176_2.00 		Homo sapiens
BCTCGTAAAAH
DTTTTACGAGV		 SELEX
Jolma et al.(2013)
HOXB13_2 		0.713 0.807
HOXB13
M05201_2.00 		Homo sapiens
DTTTTATKGGN
NCCMATAAAAH		 SELEX
Yin et al.(2017)
HOXB13_eDBD_HT-SELEX_1 		0.713 0.807
HOXB13
M05202_2.00 		Homo sapiens
NCTCGTAAAHH
DDTTTACGAGN		 SELEX
Yin et al.(2017)
HOXB13_eDBD_HT-SELEX_2 		0.713 0.807
HOXB13
M09149_2.00 		Homo sapiens
TTTTATDRSN
NSYHATAAAA		 Misc
Kulakovskiy et al.(2013)
HXB13_HUMAN.H11MO.0.A 		0.713 0.807
HOXB13
M05203_2.00 		Homo sapiens
NCTCGTAAAAH
DTTTTACGAGN		 SELEX
Yin et al.(2017)
HOXB13_eDBD_Methyl-HT-SELEX 		0.713 0.807
cad
M03780_2.00 		Drosophila melanogaster
NKTTTATKRCHB
VDGYMATAAAMN		 SELEX
Nitta et al.(2015)
cad_1 		0.606 0.561
cad
M03781_2.00 		Drosophila melanogaster
NDTTTATKRCHN
NDGYMATAAAHN		 SELEX
Nitta et al.(2015)
cad_2 		0.606 0.561
cad
M03782_2.00 		Drosophila melanogaster
NDTTTATKRCNB
VNGYMATAAAHN		 SELEX
Nitta et al.(2015)
cad_3 		0.606 0.561
cad
M03783_2.00 		Drosophila melanogaster
NNTTTAYGRYNN
NNRYCRTAAANN		 SELEX
Nitta et al.(2015)
cad_4 		0.606 0.561
cad
M06223_2.00 		Drosophila melanogaster
HTTWATTR
YAATWAAD		 B1H
Zhu et al.(2011)
Cad_Cell_FBgn0000251 		0.606 0.561
cad
M06224_2.00 		Drosophila melanogaster
RBYVDAAMV
BKTTHBRVY		 B1H
Zhu et al.(2011)
cad_FlyReg_FBgn0000251 		0.606 0.561
cad
M06225_2.00 		Drosophila melanogaster
NTTWATKR
YMATWAAN		 B1H
Zhu et al.(2011)
Cad_SOLEXA_FBgn0000251 		0.606 0.561
cad
M08420_2.00 		Drosophila melanogaster
DTTTTATKRYY
RRYMATAAAAH		 ChIP-chip
Mathelier et al.(2014)
MA0216.2 		0.606 0.561
cad
M09580_2.00 		Drosophila melanogaster
DTTTAYGRYN
NRYCRTAAAH		 Misc
Heinz et al.(2010)
Drosophila-Embryos_modEncode 		0.606 0.561
cad
M09674_2.00 		Drosophila melanogaster
HTTTATKRBY
RVYMATAAAD		 Misc
Kulakovskiy et al.(2009)
cad 		0.606 0.561
cad
M10783_2.00 		Drosophila melanogaster Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
I$CAD_Q6 		0.606 0.561
HOXD13
M00296_2.00 		Homo sapiens
GKATAAAH
DTTTATMC		 PBM
Barrera et al.(2016)
HOXD13_Q325K 		0.601 0.842
HOXD13
M00297_2.00 		Homo sapiens
NWTWRKNNNN
NNNNMYWAWN		 PBM
Barrera et al.(2016)
HOXD13_Q325R 		0.601 0.842
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSBTAP00000001222-D1 Homeodomain 132 188

Links

Other Homeodomain family TFs
Other Bos grunniens TFs

275 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava28523.m1 Manihot esculenta cassava28523.m1 N 0.000
Ciclev10029810m.g Citrus clementina Ciclev10029810m.g N 0.000
Ciclev10003738m.g Citrus clementina Ciclev10003738m.g N 0.000
Carubv10023654m.g Capsella rubella Carubv10023654m.g N 0.000
Cagra.12562s0002 Capsella grandiflora Cagra.12562s0002 N 0.000
Bostr.27991s0112 Boechera stricta Bostr.27991s0112 N 0.000
Aquca_019_00196 Aquilegia coerulea Aquca_019_00196 N 0.000
mgf025442m Mimulus guttatus mgf025442m N 0.000
mgf022253m Mimulus guttatus mgf022253m N 0.000
Cucsa.385700 Cucumis sativus Cucsa.385700 N 0.000
Ciclev10030052m.g Citrus clementina Ciclev10030052m.g N 0.000
Pm001154 Prunus mume Pm001154 N 0.000
Cla008847 Citrullus lanatus Cla008847 N 0.000
Ca_17453 Cicer arietinum Ca_17453 N 0.000
FIT1 Vitis vinifera VIT_06s0061g00720 N 0.000
Traes_2DL_47E8C44C6 Triticum aestivum Traes_2DL_47E8C44C6 N 0.000
Traes_2BL_F442E87DD Triticum aestivum Traes_2BL_F442E87DD N 0.000
Traes_2AL_088338613 Triticum aestivum Traes_2AL_088338613 N 0.000
TCM_041590 Theobroma cacao TCM_041590 N 0.000
Pavir.Ga01979 Panicum virgatum Pavir.Ga01979 N 0.000
PDK_20s1479721g001 Phoenix dactylifera PDK_20s1479721g001 N 0.000
chr3.CM0396.580.nc Lotus japonicus chr3.CM0396.580.nc N 0.000
chr3.CM0070.320.nc Lotus japonicus chr3.CM0070.320.nc N 0.000
PK27980.1 Cannabis sativa PK27980.1 N 0.000
PK26582.1 Cannabis sativa PK26582.1 N 0.000
Thhalv10016957m.g Eutrema salsugineum Thhalv10016957m.g N 0.000
SapurV1A.1382s0060 Salix purpurea SapurV1A.1382s0060 N 0.000
Pavir.J29678 Panicum virgatum Pavir.J29678 N 0.000
Pavir.J28741 Panicum virgatum Pavir.J28741 N 0.000
Solyc06g051550.2 Solanum lycopersicum Solyc06g051550.2 N 0.000
orange1.1g042465m.g Citrus sinensis orange1.1g042465m.g N 0.000
orange1.1g021355m.g Citrus sinensis orange1.1g021355m.g N 0.000
MDP0000421809 Malus domestica MDP0000421809 N 0.000
Lus10016151.g Linum usitatissimum Lus10016151.g N 0.000
Gorai.009G090400 Gossypium raimondii Gorai.009G090400 N 0.000
gene24608-v1.0-hybrid Fragaria vesca gene24608-v1.0-hybrid N 0.000
gene24607-v1.0-hybrid Fragaria vesca gene24607-v1.0-hybrid N 0.000
Eucgr.B03931 Eucalyptus grandis Eucgr.B03931 N 0.000
BRADI5G07720 Brachypodium distachyon BRADI5G07720 N 0.000
LPERR04G07210 Leersia perrieri LPERR04G07210 N 0.000
GSMUA_Achr6G27600_001 Musa acuminata GSMUA_Achr6G27600_001 N 0.000
GRMZM2G173521 Zea mays GRMZM2G173521 N 0.000
GRMZM2G107672 Zea mays GRMZM2G107672 N 0.000
GLYMA13G39650 Glycine max GLYMA13G39650 N 0.000
GLYMA12G30240 Glycine max GLYMA12G30240 N 0.000
GLYMA12G08640 Glycine max GLYMA12G08640 N 0.000
GLYMA11G19850 Glycine max GLYMA11G19850 N 0.000
FIT1 Arabidopsis lyrata fgenesh2_kg.4__753__AT2G28160.1 N 0.000
MLOC_6707 Hordeum vulgare MLOC_6707 N 0.000
Bra034392 Brassica rapa Bra034392 N 0.000
Bra011972 Brassica rapa Bra011972 N 0.000
Bra000495 Brassica rapa Bra000495 N 0.000
Bo4g165090 Brassica oleracea Bo4g165090 N 0.000
Bo4g071850 Brassica oleracea Bo4g071850 N 0.000
Bo3g040310 Brassica oleracea Bo3g040310 N 0.000
FIT Arabidopsis thaliana AT2G28160 N 0.000
AMTR_s00102p00056000 Amborella trichopoda AMTR_s00102p00056000 N 0.000
ORGLA02G0343900 Oryza glaberrima ORGLA02G0343900 N 0.000
Si010533m.g Setaria italica Si010533m.g N 0.000
Si010468m.g Setaria italica Si010468m.g N 0.000
Sb06g012030 Sorghum bicolor Sb06g012030 N 0.000
PRUPE_ppa018718mg Prunus persica PRUPE_ppa018718mg N 0.000
FIT1 Populus trichocarpa POPTR_0009s01100 N 0.000
PGSC0003DMG400019017 Solanum tuberosum PGSC0003DMG400019017 N 0.000
OS04G0381700 Oryza sativa OS04G0381700 N 0.000
ORUFI04G11150 Oryza rufipogon ORUFI04G11150 N 0.000
ORGLA04G0072000 Oryza glaberrima ORGLA04G0072000 N 0.000
AMTR_s00102p00046460 Amborella trichopoda AMTR_s00102p00046460 N 0.000
OPUNC04G08160 Oryza punctata OPUNC04G08160 N 0.000
ONIVA04G07960 Oryza nivara ONIVA04G07960 N 0.000
OLONG_016577 Oryza longistaminata OLONG_016577 N 0.000
OGLUM04G09730 Oryza glumaepatula OGLUM04G09730 N 0.000
OBART04G10120 Oryza barthii OBART04G10120 N 0.000
OB04G17410 Oryza brachyantha OB04G17410 N 0.000
MTR_4g057270 Medicago truncatula MTR_4g057270 N 0.000
MTR_2g084280 Medicago truncatula MTR_2g084280 N 0.000