cassava39895.m1 (Manihot esculenta)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 cassava39895.m1 T227125_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZHD7
M02155_2.00 		Oryza sativa
NNWAANNNNN
NNNNNTTWNN		 PBM
Weirauch et al.(2014)
pTH6076 		0.708 0.600
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava39895.m1 Homeodomain 176 234

Links

Other Homeodomain family TFs
Other Manihot esculenta TFs

33 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ATHB-9 Arabidopsis thaliana AT1G30490 D
ATHB-15 Arabidopsis thaliana AT1G52150 D
AMTR_s00056p00085520 Amborella trichopoda AMTR_s00056p00085520 I
AMTR_s00148p00033940 Amborella trichopoda AMTR_s00148p00033940 I
AMTR_s00155p00069240 Amborella trichopoda AMTR_s00155p00069240 I
ATHB-14 Arabidopsis thaliana AT2G34710 I
ATHB-8 Arabidopsis thaliana AT4G32880 I
HOX32 Oryza indica BGIOSGA013211 I
HOX33 Oryza indica BGIOSGA035845 I
Bo1g009850 Brassica oleracea Bo1g009850 I
Bo3g171030 Brassica oleracea Bo3g171030 I
Bo3g181130 Brassica oleracea Bo3g181130 I
Bo4g039380 Brassica oleracea Bo4g039380 I
Bo4g182800 Brassica oleracea Bo4g182800 I
Bo5g063050 Brassica oleracea Bo5g063050 I
Bo6g027650 Brassica oleracea Bo6g027650 I
Bra005398 Brassica rapa Bra005398 I
Bra011392 Brassica rapa Bra011392 I
Bra014315 Brassica rapa Bra014315 I
Bra018948 Brassica rapa Bra018948 I
Bra021926 Brassica rapa Bra021926 I
Bra032394 Brassica rapa Bra032394 I
Bra034539 Brassica rapa Bra034539 I
BRADI1G13910 Brachypodium distachyon BRADI1G13910 I
F775_09568 Aegilops tauschii F775_09568 I
ATHB-15 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1003335 I
PHV Arabidopsis lyrata fgenesh2_kg.1__3231__AT1G30490.1 I
ATHB-8 Arabidopsis lyrata fgenesh2_kg.7__841__AT4G32880.1 I
GLYMA04G09000 Glycine max GLYMA04G09000 I
GLYMA06G09100 Glycine max GLYMA06G09100 I
GLYMA07G01940 Glycine max GLYMA07G01940 I
GLYMA07G01950 Glycine max GLYMA07G01950 I
GLYMA08G21610 Glycine max GLYMA08G21610 I
GLYMA08G21620 Glycine max GLYMA08G21620 I
GLYMA09G02750 Glycine max GLYMA09G02750 I
GLYMA11G20520 Glycine max GLYMA11G20520 I
GLYMA12G08080 Glycine max GLYMA12G08080 I
GLYMA15G13640 Glycine max GLYMA15G13640 I
GRMZM2G023291 Zea mays GRMZM2G023291 I
GSMUA_Achr2G13050_001 Musa acuminata GSMUA_Achr2G13050_001 I
GSMUA_Achr4G28360_001 Musa acuminata GSMUA_Achr4G28360_001 I
GSMUA_Achr4G31660_001 Musa acuminata GSMUA_Achr4G31660_001 I
GSMUA_Achr5G02420_001 Musa acuminata GSMUA_Achr5G02420_001 I
GSMUA_Achr5G06550_001 Musa acuminata GSMUA_Achr5G06550_001 I
GSMUA_Achr5G18530_001 Musa acuminata GSMUA_Achr5G18530_001 I
GSMUA_Achr7G01060_001 Musa acuminata GSMUA_Achr7G01060_001 I
GSMUA_Achr8G02960_001 Musa acuminata GSMUA_Achr8G02960_001 I
GSMUA_Achr8G20090_001 Musa acuminata GSMUA_Achr8G20090_001 I
LPERR12G15670 Leersia perrieri LPERR12G15670 I
MTR_2g030130 Medicago truncatula MTR_2g030130 I
MTR_2g094520 Medicago truncatula MTR_2g094520 I
MTR_2g101190 Medicago truncatula MTR_2g101190 I
MTR_3g109800 Medicago truncatula MTR_3g109800 I
MTR_4g058970 Medicago truncatula MTR_4g058970 I
MTR_8g013980 Medicago truncatula MTR_8g013980 I
OBART03G27200 Oryza barthii OBART03G27200 I
OBART12G18630 Oryza barthii OBART12G18630 I
OGLUM03G27880 Oryza glumaepatula OGLUM03G27880 I
OGLUM12G20280 Oryza glumaepatula OGLUM12G20280 I
OMERI03G00550 Oryza meridionalis OMERI03G00550 I
OMERI12G14040 Oryza meridionalis OMERI12G14040 I
ONIVA03G28370 Oryza nivara ONIVA03G28370 I
ONIVA12G17580 Oryza nivara ONIVA12G17580 I
OPUNC03G24840 Oryza punctata OPUNC03G24840 I
OPUNC12G16840 Oryza punctata OPUNC12G16840 I
ORGLA03G0253300 Oryza glaberrima ORGLA03G0253300 I
ORGLA12G0158900 Oryza glaberrima ORGLA12G0158900 I
ORUFI03G28280 Oryza rufipogon ORUFI03G28280 I
ORUFI12G20830 Oryza rufipogon ORUFI12G20830 I
HOX32 Oryza sativa OS03G0640800 I
HOX33 Oryza sativa OS12G0612700 I
PGSC0003DMG400002616 Solanum tuberosum PGSC0003DMG400002616 I
PGSC0003DMG400011810 Solanum tuberosum PGSC0003DMG400011810 I
PGSC0003DMG400021125 Solanum tuberosum PGSC0003DMG400021125 I
PGSC0003DMG400026460 Solanum tuberosum PGSC0003DMG400026460 I
PGSC0003DMG401008054 Solanum tuberosum PGSC0003DMG401008054 I
PGSC0003DMG401029143 Solanum tuberosum PGSC0003DMG401029143 I
PGSC0003DMG402029143 Solanum tuberosum PGSC0003DMG402029143 I
POPTR_0001s18930 Populus trichocarpa POPTR_0001s18930 I
POPTR_0001s38120 Populus trichocarpa POPTR_0001s38120 I
POPTR_0003s04860 Populus trichocarpa POPTR_0003s04860 I
POPTR_0004s22090 Populus trichocarpa POPTR_0004s22090 I
POPTR_0006s25390 Populus trichocarpa POPTR_0006s25390 I
POPTR_0009s01990 Populus trichocarpa POPTR_0009s01990 I
POPTR_0011s10070 Populus trichocarpa POPTR_0011s10070 I
POPTR_0018s08110 Populus trichocarpa POPTR_0018s08110 I
PRUPE_ppa001343mg Prunus persica PRUPE_ppa001343mg I
PRUPE_ppa001378mg Prunus persica PRUPE_ppa001378mg I
PRUPE_ppa001386mg Prunus persica PRUPE_ppa001386mg I
PRUPE_ppa001405mg Prunus persica PRUPE_ppa001405mg I
Sb01g013710 Sorghum bicolor Sb01g013710 I
PHB Arabidopsis lyrata scaffold_402060.1 I
SELMODRAFT_146209 Selaginella moellendorffii SELMODRAFT_146209 I
SELMODRAFT_167294 Selaginella moellendorffii SELMODRAFT_167294 I
SELMODRAFT_270225 Selaginella moellendorffii SELMODRAFT_270225 I
Si034228m.g Setaria italica Si034228m.g I
Solyc02g024070.2 Solanum lycopersicum Solyc02g024070.2 I
Solyc02g069830.2 Solanum lycopersicum Solyc02g069830.2 I
Solyc03g120910.2 Solanum lycopersicum Solyc03g120910.2 I
Solyc08g066500.2 Solanum lycopersicum Solyc08g066500.2 I
Solyc11g069470.1 Solanum lycopersicum Solyc11g069470.1 I
Solyc12g044410.1 Solanum lycopersicum Solyc12g044410.1 I
TCM_026907 Theobroma cacao TCM_026907 I
TCM_028866 Theobroma cacao TCM_028866 I
TCM_037207 Theobroma cacao TCM_037207 I
TCM_042062 Theobroma cacao TCM_042062 I
Traes_5DL_8F7AC72B0 Triticum aestivum Traes_5DL_8F7AC72B0 I
TRIUR3_06898 Triticum urartu TRIUR3_06898 I
ATHB-8 Vitis vinifera VIT_04s0008g03250 I
REV Vitis vinifera VIT_06s0004g02800 I
ATHB-15 Vitis vinifera VIT_09s0002g03740 I
VIT_10s0003g04670 Vitis vinifera VIT_10s0003g04670 I
Ca_02539 Cicer arietinum Ca_02539 I
Ca_02790 Cicer arietinum Ca_02790 I
Ca_07994 Cicer arietinum Ca_07994 I
Ca_08667 Cicer arietinum Ca_08667 I
Ca_14560 Cicer arietinum Ca_14560 I
Ca_23324 Cicer arietinum Ca_23324 I
Cla000910 Citrullus lanatus Cla000910 I
Cla008886 Citrullus lanatus Cla008886 I
Cla009989 Citrullus lanatus Cla009989 I
Cla019819 Citrullus lanatus Cla019819 I
Cla023460 Citrullus lanatus Cla023460 I
Pm001037 Prunus mume Pm001037 I
Pm005163 Prunus mume Pm005163 I
Pm010515 Prunus mume Pm010515 I
Pm013438 Prunus mume Pm013438 I
27538.m000332 Ricinus communis 27538.m000332 I
29794.m003393 Ricinus communis 29794.m003393 I
30075.m001183 Ricinus communis 30075.m001183 I
30146.m003520 Ricinus communis 30146.m003520 I
cassava1072.valid.m1 Manihot esculenta cassava1072.valid.m1 I
cassava24160.valid.m1 Manihot esculenta cassava24160.valid.m1 I
cassava24280.valid.m1 Manihot esculenta cassava24280.valid.m1 I
cassava24281.valid.m1 Manihot esculenta cassava24281.valid.m1 I
cassava24282.valid.m1 Manihot esculenta cassava24282.valid.m1 I
cassava31462.valid.m1 Manihot esculenta cassava31462.valid.m1 I
cassava31872.valid.m1 Manihot esculenta cassava31872.valid.m1 I
cassava5988.valid.m1 Manihot esculenta cassava5988.valid.m1 I
cassava849.valid.m1 Manihot esculenta cassava849.valid.m1 I
Cucsa.048220 Cucumis sativus Cucsa.048220 I
Cucsa.167110 Cucumis sativus Cucsa.167110 I
Cucsa.312510 Cucumis sativus Cucsa.312510 I
Cucsa.361130 Cucumis sativus Cucsa.361130 I
e_gw1.15.340.1 Physcomitrella patens e_gw1.15.340.1 I
estExt_gwp_gw1.C_1880070 Physcomitrella patens estExt_gwp_gw1.C_1880070 I
estExt_gwp_gw1.C_550053 Physcomitrella patens estExt_gwp_gw1.C_550053 I
estExt_gwp_gw1.C_670048 Physcomitrella patens estExt_gwp_gw1.C_670048 I
estExt_gwp_gw1.C_700130 Physcomitrella patens estExt_gwp_gw1.C_700130 I
mgf002274m Mimulus guttatus mgf002274m I
mgf004678m Mimulus guttatus mgf004678m I
mgf006264m Mimulus guttatus mgf006264m I
mgf008512m Mimulus guttatus mgf008512m I
mgf009674m Mimulus guttatus mgf009674m I
mgf015617m Mimulus guttatus mgf015617m I
Aquca_001_00306 Aquilegia coerulea Aquca_001_00306 I
Aquca_026_00358 Aquilegia coerulea Aquca_026_00358 I
Aquca_030_00162 Aquilegia coerulea Aquca_030_00162 I
Bostr.0124s0004 Boechera stricta Bostr.0124s0004 I
Bostr.15697s0347 Boechera stricta Bostr.15697s0347 I
Bostr.23794s0635 Boechera stricta Bostr.23794s0635 I
Bostr.7867s1139 Boechera stricta Bostr.7867s1139 I
Cagra.1508s0156 Capsella grandiflora Cagra.1508s0156 I
Cagra.3346s0023 Capsella grandiflora Cagra.3346s0023 I
Cagra.4093s0017 Capsella grandiflora Cagra.4093s0017 I
Cagra.4122s0002 Capsella grandiflora Cagra.4122s0002 I
Carubv10004127m.g Capsella rubella Carubv10004127m.g I
Carubv10008304m.g Capsella rubella Carubv10008304m.g I
Carubv10012162m.g Capsella rubella Carubv10012162m.g I
Carubv10022629m.g Capsella rubella Carubv10022629m.g I
Ciclev10007435m.g Citrus clementina Ciclev10007435m.g I
Ciclev10014266m.g Citrus clementina Ciclev10014266m.g I
Ciclev10024891m.g Citrus clementina Ciclev10024891m.g I
Eucgr.B02504 Eucalyptus grandis Eucgr.B02504 I
Eucgr.C00605 Eucalyptus grandis Eucgr.C00605 I
Eucgr.D00184 Eucalyptus grandis Eucgr.D00184 I
Eucgr.F03066 Eucalyptus grandis Eucgr.F03066 I
evm.TU.supercontig_109.22 Carica papaya evm.TU.supercontig_109.22 I
evm.TU.supercontig_545.3 Carica papaya evm.TU.supercontig_545.3 I
gene08999-v1.0-hybrid Fragaria vesca gene08999-v1.0-hybrid I
gene25646-v1.0-hybrid Fragaria vesca gene25646-v1.0-hybrid I
gene28942-v1.0-hybrid Fragaria vesca gene28942-v1.0-hybrid I
Gorai.001G026800 Gossypium raimondii Gorai.001G026800 I
Gorai.003G142200 Gossypium raimondii Gorai.003G142200 I
Gorai.009G049100 Gossypium raimondii Gorai.009G049100 I
Gorai.009G107500 Gossypium raimondii Gorai.009G107500 I
Gorai.009G136800 Gossypium raimondii Gorai.009G136800 I
Gorai.010G105900 Gossypium raimondii Gorai.010G105900 I
Gorai.011G004200 Gossypium raimondii Gorai.011G004200 I
Gorai.013G266900 Gossypium raimondii Gorai.013G266900 I
Lus10000719.g Linum usitatissimum Lus10000719.g I
Lus10021470.g Linum usitatissimum Lus10021470.g I
Lus10023357.g Linum usitatissimum Lus10023357.g I
Lus10038449.g Linum usitatissimum Lus10038449.g I
MDP0000005879 Malus domestica MDP0000005879 I
MDP0000050082 Malus domestica MDP0000050082 I
MDP0000126553 Malus domestica MDP0000126553 I
MDP0000236500 Malus domestica MDP0000236500 I
MDP0000242861 Malus domestica MDP0000242861 I
MDP0000251484 Malus domestica MDP0000251484 I
MDP0000313059 Malus domestica MDP0000313059 I
MDP0000426630 Malus domestica MDP0000426630 I
MDP0000943529 Malus domestica MDP0000943529 I
orange1.1g003069m.g Citrus sinensis orange1.1g003069m.g I
orange1.1g003071m.g Citrus sinensis orange1.1g003071m.g I
orange1.1g003250m.g Citrus sinensis orange1.1g003250m.g I
orange1.1g048771m.g Citrus sinensis orange1.1g048771m.g I
Pavir.Ia01087 Panicum virgatum Pavir.Ia01087 I
Pavir.Ib04083 Panicum virgatum Pavir.Ib04083 I
SapurV1A.0002s0010 Salix purpurea SapurV1A.0002s0010 I
SapurV1A.0049s0450 Salix purpurea SapurV1A.0049s0450 I
SapurV1A.0083s0250 Salix purpurea SapurV1A.0083s0250 I
SapurV1A.0216s0190 Salix purpurea SapurV1A.0216s0190 I
SapurV1A.0272s0190 Salix purpurea SapurV1A.0272s0190 I
SapurV1A.0370s0160 Salix purpurea SapurV1A.0370s0160 I
SapurV1A.0563s0010 Salix purpurea SapurV1A.0563s0010 I
SapurV1A.0805s0030 Salix purpurea SapurV1A.0805s0030 I
SapurV1A.0950s0040 Salix purpurea SapurV1A.0950s0040 I
Thhalv10006792m.g Eutrema salsugineum Thhalv10006792m.g I
Thhalv10011238m.g Eutrema salsugineum Thhalv10011238m.g I
Thhalv10016241m.g Eutrema salsugineum Thhalv10016241m.g I
Thhalv10024403m.g Eutrema salsugineum Thhalv10024403m.g I
PK01613.1 Cannabis sativa PK01613.1 I
PK07568.1 Cannabis sativa PK07568.1 I
PK07866.1 Cannabis sativa PK07866.1 I
PK08284.1 Cannabis sativa PK08284.1 I
LjSGA_014333.2 Lotus japonicus LjSGA_014333.2 I
LjSGA_068629.1 Lotus japonicus LjSGA_068629.1 I
PDK_20s1819641g001 Phoenix dactylifera PDK_20s1819641g001 I
OB12G25330 Oryza brachyantha OB12G25330 N
mgb000172m Mimulus guttatus mgb000172m N