Bostr.27991s0131 (Boechera stricta)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Bostr.27991s0131 T228134_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.779 0.674
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.662 0.442
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.662 0.442
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.662 0.442
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.662 0.442
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.624 0.581
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.27991s0131.1.p Homeodomain 460 505

Links

Other Homeodomain family TFs
Other Boechera stricta TFs

1013 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cla006913 Citrullus lanatus Cla006913 I 0.000
Bostr.28625s0309 Boechera stricta Bostr.28625s0309 I 0.000
Aquca_052_00053 Aquilegia coerulea Aquca_052_00053 I 0.000
mgf020920m Mimulus guttatus mgf020920m I 0.000
mgf002023m Mimulus guttatus mgf002023m I 0.000
Cucsa.017410 Cucumis sativus Cucsa.017410 I 0.000
cassava41970.valid.m1 Manihot esculenta cassava41970.valid.m1 I 0.000
cassava30116.valid.m1 Manihot esculenta cassava30116.valid.m1 I 0.000
cassava14256.m1 Manihot esculenta cassava14256.m1 I 0.000
30190.m011066 Ricinus communis 30190.m011066 I 0.000
30073.m002312 Ricinus communis 30073.m002312 I 0.000
Pm023072 Prunus mume Pm023072 I 0.000
Pm019573 Prunus mume Pm019573 I 0.000
Cagra.0736s0034 Capsella grandiflora Cagra.0736s0034 I 0.000
VIT_16s0039g01450 Vitis vinifera VIT_16s0039g01450 I 0.000
TRIUR3_01357 Triticum urartu TRIUR3_01357 I 0.000
Traes_6DL_4C3F04219 Triticum aestivum Traes_6DL_4C3F04219 I 0.000
Traes_6AL_F5BFFCA3E Triticum aestivum Traes_6AL_F5BFFCA3E I 0.000
Traes_2DL_3B4943F11 Triticum aestivum Traes_2DL_3B4943F11 I 0.000
Traes_2AL_07B1977B8 Triticum aestivum Traes_2AL_07B1977B8 I 0.000
TCM_025561 Theobroma cacao TCM_025561 I 0.000
Solyc12g096070.1 Solanum lycopersicum Solyc12g096070.1 I 0.000
Solyc08g075950.1 Solanum lycopersicum Solyc08g075950.1 I 0.000
Solyc08g005430.2 Solanum lycopersicum Solyc08g005430.2 I 0.000
Si017511m.g Setaria italica Si017511m.g I 0.000
Gorai.013G184200 Gossypium raimondii Gorai.013G184200 I 0.000
PK09793.1 Cannabis sativa PK09793.1 I 0.000
Thhalv10020873m.g Eutrema salsugineum Thhalv10020873m.g I 0.000
SapurV1A.0616s0110 Salix purpurea SapurV1A.0616s0110 I 0.000
SapurV1A.0568s0060 Salix purpurea SapurV1A.0568s0060 I 0.000
SapurV1A.0177s0310 Salix purpurea SapurV1A.0177s0310 I 0.000
Pavir.J14128 Panicum virgatum Pavir.J14128 I 0.000
Pavir.Db02421 Panicum virgatum Pavir.Db02421 I 0.000
Pavir.Da02366 Panicum virgatum Pavir.Da02366 I 0.000
Pavir.Aa00919 Panicum virgatum Pavir.Aa00919 I 0.000
orange1.1g020051m.g Citrus sinensis orange1.1g020051m.g I 0.000
Lus10020352.g Linum usitatissimum Lus10020352.g I 0.000
Lus10009533.g Linum usitatissimum Lus10009533.g I 0.000
Si008818m.g Setaria italica Si008818m.g I 0.000
Gorai.004G204600 Gossypium raimondii Gorai.004G204600 I 0.000
Gorai.003G057700 Gossypium raimondii Gorai.003G057700 I 0.000
gene13517-v1.0-hybrid Fragaria vesca gene13517-v1.0-hybrid I 0.000
gene12549-v1.0-hybrid Fragaria vesca gene12549-v1.0-hybrid I 0.000
evm.TU.supercontig_25.118 Carica papaya evm.TU.supercontig_25.118 I 0.000
Eucgr.F04420 Eucalyptus grandis Eucgr.F04420 I 0.000
Eucgr.D02603 Eucalyptus grandis Eucgr.D02603 I 0.000
Ciclev10032065m.g Citrus clementina Ciclev10032065m.g I 0.000
Carubv10015887m.g Capsella rubella Carubv10015887m.g I 0.000
Carubv10013860m.g Capsella rubella Carubv10013860m.g I 0.000
Cagra.0757s0005 Capsella grandiflora Cagra.0757s0005 I 0.000
GRMZM2G105335 Zea mays GRMZM2G105335 I 0.000
OB06G11200 Oryza brachyantha OB06G11200 I 0.000
OB03G39940 Oryza brachyantha OB03G39940 I 0.000
OB02G41370 Oryza brachyantha OB02G41370 I 0.000
LPERR06G01000 Leersia perrieri LPERR06G01000 I 0.000
LPERR02G28430 Leersia perrieri LPERR02G28430 I 0.000
GSMUA_AchrUn_randomG04320_001 Musa acuminata GSMUA_AchrUn_randomG04320_001 I 0.000
GSMUA_Achr8G30640_001 Musa acuminata GSMUA_Achr8G30640_001 I 0.000
GSMUA_Achr2G04650_001 Musa acuminata GSMUA_Achr2G04650_001 I 0.000
GSMUA_Achr1G23840_001 Musa acuminata GSMUA_Achr1G23840_001 I 0.000
GSMUA_Achr10G06370_001 Musa acuminata GSMUA_Achr10G06370_001 I 0.000
GRMZM5G893117 Zea mays GRMZM5G893117 I 0.000
GRMZM2G119359 Zea mays GRMZM2G119359 I 0.000
OBART02G34550 Oryza barthii OBART02G34550 I 0.000
GRMZM2G098594 Zea mays GRMZM2G098594 I 0.000
GRMZM2G067743 Zea mays GRMZM2G067743 I 0.000
AtGRF5 Arabidopsis lyrata fgenesh2_kg.3__1504__AT3G13960.1 I 0.000
F775_24390 Aegilops tauschii F775_24390 I 0.000
F775_19681 Aegilops tauschii F775_19681 I 0.000
BRADI5G20607 Brachypodium distachyon BRADI5G20607 I 0.000
BRADI3G57267 Brachypodium distachyon BRADI3G57267 I 0.000
BRADI1G50597 Brachypodium distachyon BRADI1G50597 I 0.000
Bra027384 Brassica rapa Bra027384 I 0.000
BGIOSGA022056 Oryza indica BGIOSGA022056 I 0.000
GRF1 Oryza indica BGIOSGA005497 I 0.000
ORUFI02G36060 Oryza rufipogon ORUFI02G36060 I 0.000
Sb10g001350 Sorghum bicolor Sb10g001350 I 0.000
Sb04g034800 Sorghum bicolor Sb04g034800 I 0.000
PRUPE_ppa022199mg Prunus persica PRUPE_ppa022199mg I 0.000
PRUPE_ppa011917mg Prunus persica PRUPE_ppa011917mg I 0.000
POPTR_0013s07500 Populus trichocarpa POPTR_0013s07500 I 0.000
POPTR_0006s14560 Populus trichocarpa POPTR_0006s14560 I 0.000
PGSC0003DMG400030881 Solanum tuberosum PGSC0003DMG400030881 I 0.000
PGSC0003DMG400029384 Solanum tuberosum PGSC0003DMG400029384 I 0.000
PGSC0003DMG400018491 Solanum tuberosum PGSC0003DMG400018491 I 0.000
GRF1 Oryza sativa OS02G0776900 I 0.000
ORUFI06G01080 Oryza rufipogon ORUFI06G01080 I 0.000
GRF5 Arabidopsis thaliana AT3G13960 I 0.000
ORGLA06G0010200 Oryza glaberrima ORGLA06G0010200 I 0.000
ORGLA02G0298900 Oryza glaberrima ORGLA02G0298900 I 0.000
OPUNC06G01050 Oryza punctata OPUNC06G01050 I 0.000
OPUNC02G31900 Oryza punctata OPUNC02G31900 I 0.000
ONIVA06G01450 Oryza nivara ONIVA06G01450 I 0.000
ONIVA02G36590 Oryza nivara ONIVA02G36590 I 0.000
OMERI06G01060 Oryza meridionalis OMERI06G01060 I 0.000
OMERI02G32800 Oryza meridionalis OMERI02G32800 I 0.000
OGLUM06G01060 Oryza glumaepatula OGLUM06G01060 I 0.000
OGLUM02G35690 Oryza glumaepatula OGLUM02G35690 I 0.000
OBART06G01070 Oryza barthii OBART06G01070 I 0.000