Carubv10015887m.g (Capsella rubella)
WRC

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF08879 (WRC) IPR014977 Carubv10015887m.g T351572_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AtGRF6
M02545_2.00 		Arabidopsis thaliana
NNNNYDNN
NNHRNNNN		 PBM
Weirauch et al.(2014)
pTH7356 		0.930 0.930
AtGRF6
M07369_2.00 		Arabidopsis thaliana
NNNNNHNTGTCAGA
TCTGACANDNNNNN		 Dap-seq
OMalley et al.(2016)
AtGRF6_col_a 		0.930 0.930
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10015887m WRC 84 126

Links

Other WRC family TFs
Other Capsella rubella TFs

259 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.0757s0005 Capsella grandiflora Cagra.0757s0005 I 1.000
Traes_6BL_7462E6F9B Triticum aestivum Traes_6BL_7462E6F9B I 0.933
AtGRF6 Arabidopsis thaliana AT2G06200 D 0.930
AtGRF6 Arabidopsis lyrata fgenesh2_kg.3__2919__AT2G06200.1 I 0.930
Bostr.24399s0028 Boechera stricta Bostr.24399s0028 I 0.930
GRMZM5G893117 Zea mays GRMZM5G893117 I 0.923
Pavir.Aa00919 Panicum virgatum Pavir.Aa00919 I 0.889
Bra015184 Brassica rapa Bra015184 I 0.881
Thhalv10002643m.g Eutrema salsugineum Thhalv10002643m.g I 0.881
GLYMA09G07990 Glycine max GLYMA09G07990 I 0.860
GLYMA13G16924 Glycine max GLYMA13G16924 I 0.860
GLYMA15G19460 Glycine max GLYMA15G19460 I 0.860
GLYMA17G05800 Glycine max GLYMA17G05800 I 0.860
MTR_2g041430 Medicago truncatula MTR_2g041430 I 0.860
MTR_4g125490 Medicago truncatula MTR_4g125490 I 0.860
POPTR_0003s06360 Populus trichocarpa POPTR_0003s06360 I 0.860
POPTR_0018s07140 Populus trichocarpa POPTR_0018s07140 I 0.860
TCM_037550 Theobroma cacao TCM_037550 I 0.860
VIT_09s0002g01350 Vitis vinifera VIT_09s0002g01350 I 0.860
Cla011348 Citrullus lanatus Cla011348 I 0.860
Cla017125 Citrullus lanatus Cla017125 I 0.860
29739.m003775 Ricinus communis 29739.m003775 I 0.860
cassava39602.m1 Manihot esculenta cassava39602.m1 I 0.860
cassava40748.m1 Manihot esculenta cassava40748.m1 I 0.860
Cucsa.117300 Cucumis sativus Cucsa.117300 I 0.860
Cucsa.141640 Cucumis sativus Cucsa.141640 I 0.860
Ciclev10008922m.g Citrus clementina Ciclev10008922m.g I 0.860
Eucgr.C00823 Eucalyptus grandis Eucgr.C00823 I 0.860
evm.TU.supercontig_28.61 Carica papaya evm.TU.supercontig_28.61 I 0.860
Gorai.009G035200 Gossypium raimondii Gorai.009G035200 I 0.860
Lus10000473.g Linum usitatissimum Lus10000473.g I 0.860
Lus10015651.g Linum usitatissimum Lus10015651.g I 0.860
Lus10033441.g Linum usitatissimum Lus10033441.g I 0.860
Lus10037668.g Linum usitatissimum Lus10037668.g I 0.860
orange1.1g023105m.g Citrus sinensis orange1.1g023105m.g I 0.860
SapurV1A.0087s0080 Salix purpurea SapurV1A.0087s0080 I 0.860
LjT10E17.120.nd Lotus japonicus LjT10E17.120.nd I 0.860
GRF1 Oryza indica BGIOSGA005497 I 0.837
BRADI3G57267 Brachypodium distachyon BRADI3G57267 I 0.837
F775_24390 Aegilops tauschii F775_24390 I 0.837
GLYMA01G44471 Glycine max GLYMA01G44471 I 0.837
GLYMA07G04290 Glycine max GLYMA07G04290 I 0.837
GLYMA11G01060 Glycine max GLYMA11G01060 I 0.837
GLYMA11G11826 Glycine max GLYMA11G11826 I 0.837
GLYMA12G01730 Glycine max GLYMA12G01730 I 0.837
GLYMA16G00971 Glycine max GLYMA16G00971 I 0.837
GRMZM2G105335 Zea mays GRMZM2G105335 I 0.837
GSMUA_Achr8G30640_001 Musa acuminata GSMUA_Achr8G30640_001 I 0.837
LPERR02G28430 Leersia perrieri LPERR02G28430 I 0.837
MTR_0001s0490 Medicago truncatula MTR_0001s0490 I 0.837
MTR_8g020560 Medicago truncatula MTR_8g020560 I 0.837
OB02G41370 Oryza brachyantha OB02G41370 I 0.837
OBART02G34550 Oryza barthii OBART02G34550 I 0.837
OGLUM02G35690 Oryza glumaepatula OGLUM02G35690 I 0.837
OMERI02G32800 Oryza meridionalis OMERI02G32800 I 0.837
ONIVA02G36590 Oryza nivara ONIVA02G36590 I 0.837
OPUNC02G31900 Oryza punctata OPUNC02G31900 I 0.837
ORGLA02G0298900 Oryza glaberrima ORGLA02G0298900 I 0.837
ORUFI02G36060 Oryza rufipogon ORUFI02G36060 I 0.837
GRF1 Oryza sativa OS02G0776900 I 0.837
PGSC0003DMG400013004 Solanum tuberosum PGSC0003DMG400013004 I 0.837
POPTR_0006s14560 Populus trichocarpa POPTR_0006s14560 I 0.837
PRUPE_ppa017593mg Prunus persica PRUPE_ppa017593mg I 0.837
Sb04g034800 Sorghum bicolor Sb04g034800 I 0.837
Si017511m.g Setaria italica Si017511m.g I 0.837
Solyc07g041640.2 Solanum lycopersicum Solyc07g041640.2 I 0.837
Traes_6AL_F5BFFCA3E Triticum aestivum Traes_6AL_F5BFFCA3E I 0.837
Traes_6DL_4C3F04219 Triticum aestivum Traes_6DL_4C3F04219 I 0.837
Ca_10012 Cicer arietinum Ca_10012 I 0.837
Ca_11607 Cicer arietinum Ca_11607 I 0.837
Ca_23149 Cicer arietinum Ca_23149 I 0.837
Cla012781 Citrullus lanatus Cla012781 I 0.837
Pm013274 Prunus mume Pm013274 I 0.837
29706.m001283 Ricinus communis 29706.m001283 I 0.837
Cucsa.192190 Cucumis sativus Cucsa.192190 I 0.837
mgf020920m Mimulus guttatus mgf020920m I 0.837
Aquca_076_00086 Aquilegia coerulea Aquca_076_00086 I 0.837
Ciclev10025855m.g Citrus clementina Ciclev10025855m.g I 0.837
evm.TU.supercontig_25.118 Carica papaya evm.TU.supercontig_25.118 I 0.837
gene07429-v1.0-hybrid Fragaria vesca gene07429-v1.0-hybrid I 0.837
gene12474-v1.0-hybrid Fragaria vesca gene12474-v1.0-hybrid I 0.837
Gorai.011G058800 Gossypium raimondii Gorai.011G058800 I 0.837
MDP0000243533 Malus domestica MDP0000243533 I 0.837
orange1.1g047108m.g Citrus sinensis orange1.1g047108m.g I 0.837
Pavir.J14128 Panicum virgatum Pavir.J14128 I 0.837
SapurV1A.0002s0920 Salix purpurea SapurV1A.0002s0920 I 0.837
SapurV1A.0177s0310 Salix purpurea SapurV1A.0177s0310 I 0.837
SapurV1A.0616s0110 Salix purpurea SapurV1A.0616s0110 I 0.837
SapurV1A.3612s0010 Salix purpurea SapurV1A.3612s0010 I 0.837
PK09793.1 Cannabis sativa PK09793.1 I 0.837
PK28107.1 Cannabis sativa PK28107.1 I 0.837
chr3.CM0127.490.nc Lotus japonicus chr3.CM0127.490.nc I 0.837
LjT02E24.10.nc Lotus japonicus LjT02E24.10.nc I 0.837
BGIOSGA005785 Oryza indica BGIOSGA005785 I 0.814
BGIOSGA014417 Oryza indica BGIOSGA014417 I 0.814
GRMZM2G034876 Zea mays GRMZM2G034876 I 0.814
GRMZM2G041223 Zea mays GRMZM2G041223 I 0.814
GRMZM2G129147 Zea mays GRMZM2G129147 I 0.814
GSMUA_Achr1G21940_001 Musa acuminata GSMUA_Achr1G21940_001 I 0.814
LPERR02G23730 Leersia perrieri LPERR02G23730 I 0.814
LPERR04G19760 Leersia perrieri LPERR04G19760 I 0.814
OB04G31020 Oryza brachyantha OB04G31020 I 0.814
OBART02G29160 Oryza barthii OBART02G29160 I 0.814
OBART04G24070 Oryza barthii OBART04G24070 I 0.814
OGLUM02G29770 Oryza glumaepatula OGLUM02G29770 I 0.814
OGLUM04G24010 Oryza glumaepatula OGLUM04G24010 I 0.814
OLONG_003255 Oryza longistaminata OLONG_003255 I 0.814
OLONG_008372 Oryza longistaminata OLONG_008372 I 0.814
OMERI02G28100 Oryza meridionalis OMERI02G28100 I 0.814
OMERI04G19930 Oryza meridionalis OMERI04G19930 I 0.814
ONIVA02G31920 Oryza nivara ONIVA02G31920 I 0.814
ONIVA04G23220 Oryza nivara ONIVA04G23220 I 0.814
OPUNC02G26750 Oryza punctata OPUNC02G26750 I 0.814
OPUNC04G21620 Oryza punctata OPUNC04G21620 I 0.814
ORGLA04G0206400 Oryza glaberrima ORGLA04G0206400 I 0.814
ORUFI02G30740 Oryza rufipogon ORUFI02G30740 I 0.814
ORUFI04G25800 Oryza rufipogon ORUFI04G25800 I 0.814
OS04G0600900 Oryza sativa OS04G0600900 I 0.814
PGSC0003DMG400030881 Solanum tuberosum PGSC0003DMG400030881 I 0.814
POPTR_0001s16920 Populus trichocarpa POPTR_0001s16920 I 0.814
POPTR_0013s07500 Populus trichocarpa POPTR_0013s07500 I 0.814
PRUPE_ppa015791mg Prunus persica PRUPE_ppa015791mg I 0.814
PRUPE_ppa022199mg Prunus persica PRUPE_ppa022199mg I 0.814
Sb04g030770 Sorghum bicolor Sb04g030770 I 0.814
Sb06g027465 Sorghum bicolor Sb06g027465 I 0.814
Si017449m.g Setaria italica Si017449m.g I 0.814
Solyc08g075950.1 Solanum lycopersicum Solyc08g075950.1 I 0.814
TCM_025561 Theobroma cacao TCM_025561 I 0.814
TCM_029130 Theobroma cacao TCM_029130 I 0.814
VIT_11s0016g01250 Vitis vinifera VIT_11s0016g01250 I 0.814
VIT_16s0039g01450 Vitis vinifera VIT_16s0039g01450 I 0.814
Cla006913 Citrullus lanatus Cla006913 I 0.814
Pm019573 Prunus mume Pm019573 I 0.814
Pm027054 Prunus mume Pm027054 I 0.814
30073.m002312 Ricinus communis 30073.m002312 I 0.814
cassava14256.m1 Manihot esculenta cassava14256.m1 I 0.814
cassava2802.m1 Manihot esculenta cassava2802.m1 I 0.814
cassava34867.m1 Manihot esculenta cassava34867.m1 I 0.814
cassava41970.valid.m1 Manihot esculenta cassava41970.valid.m1 I 0.814
Cucsa.017410 Cucumis sativus Cucsa.017410 I 0.814
Aquca_052_00053 Aquilegia coerulea Aquca_052_00053 I 0.814
Ciclev10032065m.g Citrus clementina Ciclev10032065m.g I 0.814
Eucgr.F04420 Eucalyptus grandis Eucgr.F04420 I 0.814
gene12549-v1.0-hybrid Fragaria vesca gene12549-v1.0-hybrid I 0.814
Gorai.003G057700 Gossypium raimondii Gorai.003G057700 I 0.814
Gorai.013G184200 Gossypium raimondii Gorai.013G184200 I 0.814
Gorai.013G225300 Gossypium raimondii Gorai.013G225300 I 0.814
Lus10009533.g Linum usitatissimum Lus10009533.g I 0.814
Lus10020352.g Linum usitatissimum Lus10020352.g I 0.814
MDP0000274400 Malus domestica MDP0000274400 I 0.814
orange1.1g020051m.g Citrus sinensis orange1.1g020051m.g I 0.814
Pavir.Aa00789 Panicum virgatum Pavir.Aa00789 I 0.814
Pavir.Ab02786 Panicum virgatum Pavir.Ab02786 I 0.814
Pavir.J03212 Panicum virgatum Pavir.J03212 I 0.814
SapurV1A.0568s0060 Salix purpurea SapurV1A.0568s0060 I 0.814
PDK_20s1344231g002 Phoenix dactylifera PDK_20s1344231g002 I 0.814
GRMZM2G067743 Zea mays GRMZM2G067743 I 0.800
AMTR_s00024p00228870 Amborella trichopoda AMTR_s00024p00228870 I 0.791
AMTR_s00048p00216350 Amborella trichopoda AMTR_s00048p00216350 I 0.791
GRF5 Arabidopsis thaliana AT3G13960 I 0.791
BGIOSGA022056 Oryza indica BGIOSGA022056 I 0.791
Bo5g131870 Brassica oleracea Bo5g131870 I 0.791
BRADI1G50597 Brachypodium distachyon BRADI1G50597 I 0.791
BRADI3G52547 Brachypodium distachyon BRADI3G52547 I 0.791
BRADI5G20607 Brachypodium distachyon BRADI5G20607 I 0.791
F775_19681 Aegilops tauschii F775_19681 I 0.791
AtGRF5 Arabidopsis lyrata fgenesh2_kg.3__1504__AT3G13960.1 I 0.791
GRMZM2G098594 Zea mays GRMZM2G098594 I 0.791
GSMUA_Achr10G06370_001 Musa acuminata GSMUA_Achr10G06370_001 I 0.791
GSMUA_Achr1G23840_001 Musa acuminata GSMUA_Achr1G23840_001 I 0.791
GSMUA_Achr2G04650_001 Musa acuminata GSMUA_Achr2G04650_001 I 0.791
GSMUA_Achr7G02330_001 Musa acuminata GSMUA_Achr7G02330_001 I 0.791
GSMUA_AchrUn_randomG04320_001 Musa acuminata GSMUA_AchrUn_randomG04320_001 I 0.791
LPERR06G01000 Leersia perrieri LPERR06G01000 I 0.791
OB06G11200 Oryza brachyantha OB06G11200 I 0.791
OBART06G01070 Oryza barthii OBART06G01070 I 0.791
OGLUM06G01060 Oryza glumaepatula OGLUM06G01060 I 0.791
OMERI06G01060 Oryza meridionalis OMERI06G01060 I 0.791
ONIVA06G01450 Oryza nivara ONIVA06G01450 I 0.791
OPUNC06G01050 Oryza punctata OPUNC06G01050 I 0.791
ORGLA06G0010200 Oryza glaberrima ORGLA06G0010200 I 0.791
ORUFI06G01080 Oryza rufipogon ORUFI06G01080 I 0.791
PGSC0003DMG400018491 Solanum tuberosum PGSC0003DMG400018491 I 0.791
PGSC0003DMG400029384 Solanum tuberosum PGSC0003DMG400029384 I 0.791
Sb10g001350 Sorghum bicolor Sb10g001350 I 0.791
Si008818m.g Setaria italica Si008818m.g I 0.791
Si011853m.g Setaria italica Si011853m.g I 0.791
Solyc08g005430.2 Solanum lycopersicum Solyc08g005430.2 I 0.791
Solyc12g096070.1 Solanum lycopersicum Solyc12g096070.1 I 0.791
Traes_2AL_07B1977B8 Triticum aestivum Traes_2AL_07B1977B8 I 0.791
Traes_2DL_3B4943F11 Triticum aestivum Traes_2DL_3B4943F11 I 0.791
TRIUR3_01357 Triticum urartu TRIUR3_01357 I 0.791
mgf002023m Mimulus guttatus mgf002023m I 0.791
Bostr.28625s0309 Boechera stricta Bostr.28625s0309 I 0.791
Cagra.0736s0034 Capsella grandiflora Cagra.0736s0034 I 0.791
Carubv10013860m.g Capsella rubella Carubv10013860m.g I 0.791
Pavir.Da02366 Panicum virgatum Pavir.Da02366 I 0.791
Pavir.Db02421 Panicum virgatum Pavir.Db02421 I 0.791
Pavir.Ga00724 Panicum virgatum Pavir.Ga00724 I 0.791
Pavir.Gb00674 Panicum virgatum Pavir.Gb00674 I 0.791
Thhalv10020873m.g Eutrema salsugineum Thhalv10020873m.g I 0.791
BGIOSGA022506 Oryza indica BGIOSGA022506 I 0.767
Bo1g134740 Brassica oleracea Bo1g134740 I 0.767
Bra021521 Brassica rapa Bra021521 I 0.767
Bra027384 Brassica rapa Bra027384 I 0.767
F775_13620 Aegilops tauschii F775_13620 I 0.767
F775_52301 Aegilops tauschii F775_52301 I 0.767
MLOC_64055 Hordeum vulgare MLOC_64055 I 0.767
OGLUM06G07010 Oryza glumaepatula OGLUM06G07010 I 0.767
OLONG_006788 Oryza longistaminata OLONG_006788 I 0.767
OMERI06G07610 Oryza meridionalis OMERI06G07610 I 0.767
OPUNC06G06310 Oryza punctata OPUNC06G06310 I 0.767
ORGLA06G0059900 Oryza glaberrima ORGLA06G0059900 I 0.767
ORUFI06G06870 Oryza rufipogon ORUFI06G06870 I 0.767
GRF2 Oryza sativa OS06G0204800 I 0.767
POPTR_0019s05910 Populus trichocarpa POPTR_0019s05910 I 0.767
TCM_016120 Theobroma cacao TCM_016120 I 0.767
Traes_6AL_EEA5F4238 Triticum aestivum Traes_6AL_EEA5F4238 I 0.767
TRIUR3_30418 Triticum urartu TRIUR3_30418 I 0.767
VIT_02s0025g04910 Vitis vinifera VIT_02s0025g04910 I 0.767
30190.m011066 Ricinus communis 30190.m011066 I 0.767
cassava30116.valid.m1 Manihot esculenta cassava30116.valid.m1 I 0.767
cassava41173.m1 Manihot esculenta cassava41173.m1 I 0.767
mgf026507m Mimulus guttatus mgf026507m I 0.767
Gorai.004G204600 Gossypium raimondii Gorai.004G204600 I 0.767
Gorai.008G241800 Gossypium raimondii Gorai.008G241800 I 0.767
Lus10000468.g Linum usitatissimum Lus10000468.g I 0.767
orange1.1g028751m.g Citrus sinensis orange1.1g028751m.g I 0.767
OLONG_003473 Oryza longistaminata OLONG_003473 I 0.750
evm.TU.supercontig_43.138 Carica papaya evm.TU.supercontig_43.138 I 0.750
SapurV1A.0260s0250 Salix purpurea SapurV1A.0260s0250 I 0.750
Bo3g065850 Brassica oleracea Bo3g065850 I 0.744
Bra001532 Brassica rapa Bra001532 I 0.744
BRADI1G46427 Brachypodium distachyon BRADI1G46427 I 0.744
GSMUA_Achr6G01270_001 Musa acuminata GSMUA_Achr6G01270_001 I 0.744
LPERR06G06090 Leersia perrieri LPERR06G06090 I 0.744
POPTR_0001s01480 Populus trichocarpa POPTR_0001s01480 I 0.744
POPTR_0003s10000 Populus trichocarpa POPTR_0003s10000 I 0.744
PRUPE_ppa011917mg Prunus persica PRUPE_ppa011917mg I 0.744
Pm023072 Prunus mume Pm023072 I 0.744
Ciclev10022033m.g Citrus clementina Ciclev10022033m.g I 0.744
Eucgr.D02603 Eucalyptus grandis Eucgr.D02603 I 0.744
gene13517-v1.0-hybrid Fragaria vesca gene13517-v1.0-hybrid I 0.744
Lus10004455.g Linum usitatissimum Lus10004455.g I 0.744
SapurV1A.0051s0520 Salix purpurea SapurV1A.0051s0520 I 0.744
SapurV1A.0063s0420 Salix purpurea SapurV1A.0063s0420 I 0.744
OB03G39940 Oryza brachyantha OB03G39940 I 0.741
AMTR_s00040p00189460 Amborella trichopoda AMTR_s00040p00189460 I 0.721
GRMZM5G850129 Zea mays GRMZM5G850129 I 0.721
GSMUA_Achr11G21590_001 Musa acuminata GSMUA_Achr11G21590_001 I 0.721
GSMUA_Achr5G20170_001 Musa acuminata GSMUA_Achr5G20170_001 I 0.721
SELMODRAFT_442384 Selaginella moellendorffii SELMODRAFT_442384 I 0.721
SELMODRAFT_442763 Selaginella moellendorffii SELMODRAFT_442763 I 0.721
29700.m000761 Ricinus communis 29700.m000761 I 0.721
Aquca_013_00537 Aquilegia coerulea Aquca_013_00537 I 0.721
Lus10028899.g Linum usitatissimum Lus10028899.g N 0.721
MDP0000276970 Malus domestica MDP0000276970 I 0.721
Pavir.Da01847 Panicum virgatum Pavir.Da01847 I 0.721
SapurV1A.0326s0130 Salix purpurea SapurV1A.0326s0130 I 0.721