Ciclev10001116m.g (Citrus clementina)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Ciclev10001116m.g T228362_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.761 0.744
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.664 0.488
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.664 0.488
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.664 0.488
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.664 0.488
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.626 0.651
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10001116m Homeodomain 370 415
Ciclev10001472m Homeodomain 303 348

Links

Other Homeodomain family TFs
Other Citrus clementina TFs

1022 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PITX1 Homo sapiens ENSG00000069011 D 0.000
DLX5 Homo sapiens ENSG00000105880 D 0.000
DLX4 Homo sapiens ENSG00000108813 D 0.000
DLX2 Homo sapiens ENSG00000115844 D 0.000
DLX1 Homo sapiens ENSG00000144355 D 0.000
Pitx1 Mus musculus ENSMUSG00000021506 D 0.000
Crx Mus musculus ENSMUSG00000041578 D 0.000
Hoxb8 Mus musculus ENSMUSG00000056648 D 0.000
CpipJ_CPIJ004949 Culex pipiens CpipJ_CPIJ004949 I 0.000
WUBG_01256 Wuchereria bancrofti WUBG_01256 I 0.000
ACEP22182 Atta cephalotes ACEP22182 I 0.000
ACEP26487 Atta cephalotes ACEP26487 I 0.000
ADAC003417 Anopheles darlingi ADAC003417 I 0.000
Bm2445 Brugia malayi Bm2445 I 0.000
CapteG187461 Capitella teleta CapteG187461 I 0.000
CapteG41929 Capitella teleta CapteG41929 I 0.000
CBN30161 Caenorhabditis brenneri CBN30161 I 0.000
CBN30402 Caenorhabditis brenneri CBN30402 I 0.000
CJA08488 Caenorhabditis japonica CJA08488 I 0.000
CJA38412 Caenorhabditis japonica CJA38412 I 0.000
CPIJ004949 Culex quinquefasciatus CPIJ004949 I 0.000
ENSACAG00000004933 Anolis carolinensis ENSACAG00000004933 I 0.000
ENSACAG00000012070 Anolis carolinensis ENSACAG00000012070 I 0.000
DLX1 Anolis carolinensis ENSACAG00000016175 I 0.000
ENSAMEG00000004941 Ailuropoda melanoleuca ENSAMEG00000004941 I 0.000
ENSAPLG00000000623 Anas platyrhynchos ENSAPLG00000000623 I 0.000
MEOX1 Canis familiaris ENSCAFG00000014476 I 0.000
ENSCHOG00000002762 Choloepus hoffmanni ENSCHOG00000002762 I 0.000
ENSCHOG00000002853 Choloepus hoffmanni ENSCHOG00000002853 I 0.000
ENSCHOG00000004334 Choloepus hoffmanni ENSCHOG00000004334 I 0.000
DLX1 Choloepus hoffmanni ENSCHOG00000006718 I 0.000
ENSCING00000013809 Ciona intestinalis ENSCING00000013809 I 0.000
ENSECAG00000000452 Equus caballus ENSECAG00000000452 I 0.000
DLX1 Echinops telfairi ENSETEG00000017573 I 0.000
ENSFALG00000005185 Ficedula albicollis ENSFALG00000005185 I 0.000
ENSLOCG00000004905 Lepisosteus oculatus ENSLOCG00000004905 I 0.000
ENSMEUG00000002781 Macropus eugenii ENSMEUG00000002781 I 0.000
ENSMEUG00000012817 Macropus eugenii ENSMEUG00000012817 I 0.000
ENSMGAG00000010010 Meleagris gallopavo ENSMGAG00000010010 I 0.000
ENSMICG00000002512 Microcebus murinus ENSMICG00000002512 I 0.000
ENSMICG00000004221 Microcebus murinus ENSMICG00000004221 I 0.000
ENSMLUG00000025271 Myotis lucifugus ENSMLUG00000025271 I 0.000
ENSMMUG00000032605 Macaca mulatta ENSMMUG00000032605 I 0.000
ENSOANG00000001698 Ornithorhynchus anatinus ENSOANG00000001698 I 0.000
ENSOANG00000030226 Ornithorhynchus anatinus ENSOANG00000030226 I 0.000
ENSOANG00000031547 Ornithorhynchus anatinus ENSOANG00000031547 I 0.000
DLX5 Ochotona princeps ENSOPRG00000001891 I 0.000
DMBX1 Procavia capensis ENSPCAG00000000286 I 0.000
DLX1 Procavia capensis ENSPCAG00000008892 I 0.000
ENSPFOG00000024055 Poecilia formosa ENSPFOG00000024055 I 0.000
ENSPMAG00000007538 Petromyzon marinus ENSPMAG00000007538 I 0.000
MNX1 Pteropus vampyrus ENSPVAG00000006643 I 0.000
BARX2 Tupaia belangeri ENSTBEG00000000641 I 0.000
ENSTBEG00000005238 Tupaia belangeri ENSTBEG00000005238 I 0.000
ENSTGUG00000004229 Taeniopygia guttata ENSTGUG00000004229 I 0.000
ENSTSYG00000010539 Tarsius syrichta ENSTSYG00000010539 I 0.000
BARX2 Vicugna pacos ENSVPAG00000010480 I 0.000
ENSXMAG00000020166 Xiphophorus maculatus ENSXMAG00000020166 I 0.000
GH24924 Drosophila grimshawi FBgn0132379 I 0.000
GB40331 Apis mellifera GB40331 I 0.000
GB42226 Apis mellifera GB42226 I 0.000
HMEL006348 Heliconius melpomene HMEL006348 I 0.000
HMEL008500 Heliconius melpomene HMEL008500 I 0.000
ISCW005275 Ixodes scapularis ISCW005275 I 0.000
ISCW017713 Ixodes scapularis ISCW017713 I 0.000
ISCW020504 Ixodes scapularis ISCW020504 I 0.000
KGM_17907 Danaus plexippus KGM_17907 I 0.000
L798_07902 Zootermopsis nevadensis L798_07902 I 0.000
MCINX001506 Melitaea cinxia MCINX001506 I 0.000
MCINX006169 Melitaea cinxia MCINX006169 I 0.000
MESCA002805 Megaselia scalaris MESCA002805 I 0.000
MESCA003774 Megaselia scalaris MESCA003774 I 0.000
ML145813a Mnemiopsis leidyi ML145813a I 0.000
PPA25532 Pristionchus pacificus PPA25532 I 0.000
Ppa-tab-1 Pristionchus pacificus PPA28228 I 0.000
RPRC011667 Rhodnius prolixus RPRC011667 I 0.000
SINV23302 Solenopsis invicta SINV23302 I 0.000
SINV24822 Solenopsis invicta SINV24822 I 0.000
SINV25862 Solenopsis invicta SINV25862 I 0.000
YQE_10539 Dendroctonus ponderosae YQE_10539 I 0.000
Aan_R000006 Calypte anna Aan_R000006 I 0.000
Afo_R006907 Aptenodytes forsteri Afo_R006907 I 0.000
Afo_R008309 Aptenodytes forsteri Afo_R008309 I 0.000
Afo_R008451 Aptenodytes forsteri Afo_R008451 I 0.000
Alligator_sinensis_CCG007400.1 Alligator sinensis Alligator_sinensis_CCG007400.1 I 0.000
Alligator_sinensis_CCG015970.1 Alligator sinensis Alligator_sinensis_CCG015970.1 I 0.000
Alligator_sinensis_CCG017464.1 Alligator sinensis Alligator_sinensis_CCG017464.1 I 0.000
Alligator_sinensis_CCG019716.1 Alligator sinensis Alligator_sinensis_CCG019716.1 I 0.000
Brh_R007506 Buceros rhinoceros Brh_R007506 I 0.000
Brh_R009027 Buceros rhinoceros Brh_R009027 I 0.000
Cflo_02583--XP_001122433.1_APIME Camponotus floridanus Cflo_02583--XP_001122433.1_APIME I 0.000
Cmyd_10004252 Chelonia mydas Cmyd_10004252 I 0.000
ENSBTAP00000006046-D1 Bos grunniens ENSBTAP00000006046-D1 I 0.000
ENSMMUP00000041370 Macaca fascicularis ENSMMUP00000041370 I 0.000
Ogr18027 Ophisaurus gracilis Ogr18027 I 0.000
Tal_R010888 Tyto alba Tal_R010888 I 0.000
e_gw.814.10.1 Branchiostoma floridae e_gw.814.10.1 I 0.000
Ocbimv22038354m.g Octopus bimaculoides Ocbimv22038354m.g I 0.000
Sakowv30000867m.g Saccoglossus kowalevskii Sakowv30000867m.g I 0.000
CLEC003990 Cimex lectularius CLEC003990 I 0.000
CLEC007143 Cimex lectularius CLEC007143 I 0.000
LCUP001059 Lucilia cuprina LCUP001059 I 0.000
LCUP010259 Lucilia cuprina LCUP010259 I 0.000
LDEC001249 Leptinotarsa decemlineata LDEC001249 I 0.000
LDEC010767 Leptinotarsa decemlineata LDEC010767 I 0.000
Sjc_0004020 Schistosoma japonicum Sjc_0004020 I 0.000
Sjc_0039470 Schistosoma japonicum Sjc_0039470 I 0.000
Sjc_0075360 Schistosoma japonicum Sjc_0075360 I 0.000
SNAPOd2T00009387001 Oikopleura dioica SNAPOd2T00009387001 I 0.000
en1 Xenopus tropicalis XB-GENE-5737237 I 0.000
Minc06164 Meloidogyne incognita Minc06164 I 0.000
AALB000327 Anopheles albimanus AALB000327 I 0.000
AALB004916 Anopheles albimanus AALB004916 I 0.000
AALB005001 Anopheles albimanus AALB005001 I 0.000
AALB007707 Anopheles albimanus AALB007707 I 0.000
AARA005138 Anopheles arabiensis AARA005138 I 0.000
AATE001079 Anopheles atroparvus AATE001079 I 0.000
AATE014392 Anopheles atroparvus AATE014392 I 0.000
ACHR004287 Anopheles christyi ACHR004287 I 0.000
ACOM031312 Anopheles coluzzii ACOM031312 I 0.000
ACUA013183 Anopheles culicifacies ACUA013183 I 0.000
ADIR001763 Anopheles dirus ADIR001763 I 0.000
ADIR006768 Anopheles dirus ADIR006768 I 0.000
ADIR007878 Anopheles dirus ADIR007878 I 0.000
ADIR008635 Anopheles dirus ADIR008635 I 0.000
AEPI004828 Anopheles epiroticus AEPI004828 I 0.000
AEPI004981 Anopheles epiroticus AEPI004981 I 0.000
AFAF017311 Anopheles farauti AFAF017311 I 0.000
AFUN001295 Anopheles funestus AFUN001295 I 0.000
AFUN007609 Anopheles funestus AFUN007609 I 0.000
AMAM002073 Anopheles maculatus AMAM002073 I 0.000
AMAM009154 Anopheles maculatus AMAM009154 I 0.000
AMAM018342 Anopheles maculatus AMAM018342 I 0.000
AMEC016887 Anopheles melas AMEC016887 I 0.000
AMEC018259 Anopheles melas AMEC018259 I 0.000
AMEM013417 Anopheles merus AMEM013417 I 0.000
AMIN005749 Anopheles minimus AMIN005749 I 0.000
AMIN006279 Anopheles minimus AMIN006279 I 0.000
AMIN011086 Anopheles minimus AMIN011086 I 0.000
AQUA000678 Anopheles quadriannulatus AQUA000678 I 0.000
ASIS013253 Anopheles sinensis ASIS013253 I 0.000
ASTEI02548 Anopheles stephensi ASTEI02548 I 0.000
BGLB001705 Biomphalaria glabrata BGLB001705 I 0.000
BGLB005976 Biomphalaria glabrata BGLB005976 I 0.000
BGLB007215 Biomphalaria glabrata BGLB007215 I 0.000
A_07396 Schistosoma haematobium A_07396 I 0.000
ALUE_0000610701 Ascaris lumbricoides ALUE_0000610701 I 0.000
ANCCAN_05211 Ancylostoma caninum ANCCAN_05211 I 0.000
ANCCEY_06024 Ancylostoma ceylanicum ANCCEY_06024 I 0.000
ANCDUO_09759 Ancylostoma duodenale ANCDUO_09759 I 0.000
augustus_masked-nMf.1.1.scaf20573-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf20573-processed-gene-0.0 I 0.000
BTMF_0000989001 Brugia timori BTMF_0000989001 I 0.000
CGOC_0000387301 Cylicostephanus goldi CGOC_0000387301 I 0.000
csin105841 Clonorchis sinensis csin105841 I 0.000
D915_08352 Fasciola hepatica D915_08352 I 0.000
DILT_0000473401 Diphyllobothrium latum DILT_0000473401 I 0.000
DILT_0000834901 Diphyllobothrium latum DILT_0000834901 I 0.000
EEL_0001069601 Elaeophora elaphi EEL_0001069601 I 0.000
EVEC_0000078301 Enterobius vermicularis EVEC_0000078301 I 0.000
genemark-nMf.1.1.scaf05885-processed-gene-0.2 Meloidogyne floridensis genemark-nMf.1.1.scaf05885-processed-gene-0.2 I 0.000
GPLIN_001485000 Globodera pallida GPLIN_001485000 I 0.000
GPUH_0000172001 Gongylonema pulchrum GPUH_0000172001 I 0.000
Hba_11782 Heterorhabditis bacteriophora Hba_11782 I 0.000
Hba_14264 Heterorhabditis bacteriophora Hba_14264 I 0.000
HDID_0000783701 Hymenolepis diminuta HDID_0000783701 I 0.000
HPLM_0000640301 Haemonchus placei HPLM_0000640301 I 0.000
L893_g29073 Steinernema glaseri L893_g29073 I 0.000
L893_g5086 Steinernema glaseri L893_g5086 I 0.000
maker-nMf.1.1.scaf06360-augustus-gene-0.6 Meloidogyne floridensis maker-nMf.1.1.scaf06360-augustus-gene-0.6 I 0.000
maker-nMf.1.1.scaf10679-snap-gene-0.4 Meloidogyne floridensis maker-nMf.1.1.scaf10679-snap-gene-0.4 I 0.000
MCOS_0000905101 Mesocestoides corti MCOS_0000905101 I 0.000
MhA1_Contig1070.frz3.gene23 Meloidogyne hapla MhA1_Contig1070.frz3.gene23 I 0.000
MhA1_Contig168.frz3.gene2 Meloidogyne hapla MhA1_Contig168.frz3.gene2 I 0.000
MhA1_Contig541.frz3.gene24 Meloidogyne hapla MhA1_Contig541.frz3.gene24 I 0.000
MhA1_Contig878.frz3.gene2 Meloidogyne hapla MhA1_Contig878.frz3.gene2 I 0.000
NBR_0001369301 Nippostrongylus brasiliensis NBR_0001369301 I 0.000
nDi.2.2.2.g11780 Dirofilaria immitis nDi.2.2.2.g11780 I 0.000
nLs.2.1.2.g07662 Litomosoides sigmodontis nLs.2.1.2.g07662 I 0.000
nOo.2.0.1.g04757 Onchocerca ochengi nOo.2.0.1.g04757 I 0.000
OFLC_0001568201 Onchocerca flexuosa OFLC_0001568201 I 0.000
PXEA_0000830701 Protopolystoma xenopodis PXEA_0000830701 I 0.000
SBAD_0000184901 Soboliphyme baturini SBAD_0000184901 I 0.000
scaffold267-EXSNAP2012.18 Pristionchus exspectatus scaffold267-EXSNAP2012.18 I 0.000
scaffold54-EXSNAP2012.70 Pristionchus exspectatus scaffold54-EXSNAP2012.70 I 0.000
SCUD_0000123701 Schistosoma curassoni SCUD_0000123701 I 0.000
SCUD_0001148701 Schistosoma curassoni SCUD_0001148701 I 0.000
SMTD_0002090201 Schistosoma mattheei SMTD_0002090201 I 0.000
SROB_0000422701 Schistosoma rodhaini SROB_0000422701 I 0.000
SROB_0000568701 Schistosoma rodhaini SROB_0000568701 I 0.000
SROB_0000927801 Schistosoma rodhaini SROB_0000927801 I 0.000
SROB_0001170301 Schistosoma rodhaini SROB_0001170301 I 0.000
SVUK_0000982701 Strongylus vulgaris SVUK_0000982701 I 0.000
T265_14910 Opisthorchis viverrini T265_14910 I 0.000
TCLT_0000843001 Thelazia callipaeda TCLT_0000843001 I 0.000
TRE_0000552801 Trichobilharzia regenti TRE_0000552801 I 0.000
TRE_0001317801 Trichobilharzia regenti TRE_0001317801 I 0.000
TsM_001125800 Taenia solium TsM_001125800 I 0.000
WUBG_08134 Wuchereria bancrofti WUBG_08134 N 0.000
ENSMEUG00000001401 Macropus eugenii ENSMEUG00000001401 N 0.000
HOXB8 Monodelphis domestica ENSMODG00000009593 N 0.000
Rhox2g Mus musculus ENSMUSG00000079629 N 0.000
Rhox2c Mus musculus ENSMUSG00000079637 N 0.000
HMBOX1 Ochotona princeps ENSOPRG00000013613 N 0.000
GD19379 Drosophila simulans FBgn0085026 N 0.000
FVEG_06689 Fusarium verticillioides FVEG_06689 N 0.000
SINV24463 Solenopsis invicta SINV24463 N 0.000
Cmyd_10006886 Chelonia mydas Cmyd_10006886 N 0.000
Pvit_07422 Pogona vitticeps Pvit_07422 N 0.000
CLEC007188 Cimex lectularius CLEC007188 N 0.000
Contig17646.0.g10 Oxytricha trifallax Contig17646.0.g10 N 0.000
Sjc_0026350 Schistosoma japonicum Sjc_0026350 N 0.000
Sjc_0057900 Schistosoma japonicum Sjc_0057900 N 0.000
Sjc_0117080 Schistosoma japonicum Sjc_0117080 N 0.000
SNAPOd2T00004995001 Oikopleura dioica SNAPOd2T00004995001 N 0.000
XP_002154082.1 Hydra magnipapillata XP_002154082.1 N 0.000
AALB003620 Anopheles albimanus AALB003620 N 0.000
ACUA026846 Anopheles culicifacies ACUA026846 N 0.000
AFUN010407 Anopheles funestus AFUN010407 N 0.000
AMAM017394 Anopheles maculatus AMAM017394 N 0.000
ASTEI04298 Anopheles stephensi ASTEI04298 N 0.000
BGLB001559 Biomphalaria glabrata BGLB001559 N 0.000
ACAC_0001096101 Angiostrongylus cantonensis ACAC_0001096101 N 0.000
ACOC_0000018801 Angiostrongylus costaricensis ACOC_0000018801 N 0.000
ANCCAN_01052 Ancylostoma caninum ANCCAN_01052 N 0.000
ANCDUO_18109 Ancylostoma duodenale ANCDUO_18109 N 0.000
D915_06583 Fasciola hepatica D915_06583 N 0.000
D915_09728 Fasciola hepatica D915_09728 N 0.000
DILT_0000246201 Diphyllobothrium latum DILT_0000246201 N 0.000
EEL_0000283301 Elaeophora elaphi EEL_0000283301 N 0.000
genemark-nMf.1.1.scaf08601-processed-gene-0.1 Meloidogyne floridensis genemark-nMf.1.1.scaf08601-processed-gene-0.1 N 0.000
HPBE_0000692601 Heligmosomoides bakeri HPBE_0000692601 N 0.000
HPLM_0001305101 Haemonchus placei HPLM_0001305101 N 0.000
L892_g18619 Steinernema scapterisci L892_g18619 N 0.000
L893_g7450 Steinernema glaseri L893_g7450 N 0.000
L898_g696 Steinernema monticolum L898_g696 N 0.000
PXEA_0000194701 Protopolystoma xenopodis PXEA_0000194701 N 0.000
PXEA_0001806501 Protopolystoma xenopodis PXEA_0001806501 N 0.000
SMTD_0002268201 Schistosoma mattheei SMTD_0002268201 N 0.000
SPER_0002786601 Spirometra erinaceieuropaei SPER_0002786601 N 0.000
SPER_0003017401 Spirometra erinaceieuropaei SPER_0003017401 N 0.000
TELCIR_03058 Teladorsagia circumcincta TELCIR_03058 N 0.000
TELCIR_25656 Teladorsagia circumcincta TELCIR_25656 N 0.000