Ciclev10026199m.g (Citrus clementina)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Ciclev10026199m.g T228419_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WOX13
M02049_2.00 		Arabidopsis thaliana
YTGATTGA
TCAATCAR		 PBM
Weirauch et al.(2014)
pTH6461 		0.867 0.912
WOX13
M00866_2.00 		Arabidopsis thaliana
NNTGATTGAN
NTCAATCANN		 PBM
Franco-Zorrilla et al.(2014)
WOX13 		0.867 0.912
GRMZM2G038252
M02137_2.00 		Zea mays
HTRATTGV
BCAATYAD		 PBM
Weirauch et al.(2014)
pTH6141 		0.854 0.895
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10026199m Homeodomain 104 165

Links

Other Homeodomain family TFs
Other Citrus clementina TFs

345 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TGA4 Arabidopsis thaliana AT5G10030 D
TGA1 Arabidopsis thaliana AT5G65210 D
Thhalv10013890m.g Eutrema salsugineum Thhalv10013890m.g I
TGA1 Arabidopsis lyrata Al_scaffold_0008_3070 I
Thhalv10004438m.g Eutrema salsugineum Thhalv10004438m.g I
Carubv10026623m.g Capsella rubella Carubv10026623m.g I
Carubv10001361m.g Capsella rubella Carubv10001361m.g I
Cagra.1085s0054 Capsella grandiflora Cagra.1085s0054 I
Cagra.0917s0063 Capsella grandiflora Cagra.0917s0063 I
Bostr.13175s0098 Boechera stricta Bostr.13175s0098 I
Bostr.0568s0268 Boechera stricta Bostr.0568s0268 I
TGA4 Arabidopsis lyrata fgenesh2_kg.6__963__AT5G10030.1 I
Bra037374 Brassica rapa Bra037374 I
Bra031871 Brassica rapa Bra031871 I
Bra024366 Brassica rapa Bra024366 I
Bo9g018570 Brassica oleracea Bo9g018570 I
Bo3g099410 Brassica oleracea Bo3g099410 I
Bo00615s190 Brassica oleracea Bo00615s190 I