gene17249-v1.0-hybrid (Fragaria vesca)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 gene17249-v1.0-hybrid T228614_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MTR_2g038000
M02141_2.00 		Medicago truncatula
NDNYWNNNNN
NNNNNWRNHN		 PBM
Weirauch et al.(2014)
pTH6339 		0.679 0.702
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna17249.1-v1.0-hybrid Homeodomain 469 525

Links

Other Homeodomain family TFs
Other Fragaria vesca TFs

27 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MTR_2g038000 Medicago truncatula MTR_2g038000 D 0.679
PRHA Arabidopsis lyrata scaffold_701235.1 I 0.647
chr4.CM0244.10.nd Lotus japonicus chr4.CM0244.10.nd I 0.664
Thhalv10024489m.g Eutrema salsugineum Thhalv10024489m.g I 0.674
Gorai.009G002500 Gossypium raimondii Gorai.009G002500 I 0.708
Eucgr.C00114 Eucalyptus grandis Eucgr.C00114 I 0.685
Carubv10004175m.g Capsella rubella Carubv10004175m.g I 0.670
Cagra.0268s0009 Capsella grandiflora Cagra.0268s0009 I 0.670
Bostr.7867s0841 Boechera stricta Bostr.7867s0841 I 0.674
mgf003961m Mimulus guttatus mgf003961m I 0.653
cassava27173.m1 Manihot esculenta cassava27173.m1 I 0.749
29671.m000294 Ricinus communis 29671.m000294 I 0.717
Pm008905 Prunus mume Pm008905 I 0.837
Ca_08838 Cicer arietinum Ca_08838 I 0.705
PRH Arabidopsis thaliana AT4G29940 I 0.650
PRUPE_ppa023964mg Prunus persica PRUPE_ppa023964mg I 0.837
GLYMA17G06690 Glycine max GLYMA17G06690 I 0.774
GLYMA15G17956 Glycine max GLYMA15G17956 I 0.788
GLYMA13G00540 Glycine max GLYMA13G00540 I 0.777
GLYMA09G06730 Glycine max GLYMA09G06730 I 0.820
Bra011153 Brassica rapa Bra011153 I 0.642
Bra010310 Brassica rapa Bra010310 I 0.684
Bo3g175850 Brassica oleracea Bo3g175850 I 0.684
Bo1g014710 Brassica oleracea Bo1g014710 I 0.642
POPTR_0018s13920 Populus trichocarpa POPTR_0018s13920 N 0.749
POPTR_0006s07520 Populus trichocarpa POPTR_0006s07520 N 0.749
SapurV1A.0140s0170 Salix purpurea SapurV1A.0140s0170 N 0.650