GLYMA13G00540 (Glycine max)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 GLYMA13G00540 T218856_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MTR_2g038000
M02141_2.00 		Medicago truncatula
NDNYWNNNNN
NNNNNWRNHN		 PBM
Weirauch et al.(2014)
pTH6339 		0.704 0.702
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GLYMA13G00540.1 Homeodomain 478 534
GLYMA13G00540.2 Homeodomain 478 534
GLYMA13G00540.3 Homeodomain 478 534
GLYMA13G00540.4 Homeodomain 478 534

Links

Other Homeodomain family TFs
Other Glycine max TFs

28 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA17G06690 Glycine max GLYMA17G06690 I 0.863
PRUPE_ppa023964mg Prunus persica PRUPE_ppa023964mg I 0.798
Pm008905 Prunus mume Pm008905 I 0.798
gene17249-v1.0-hybrid Fragaria vesca gene17249-v1.0-hybrid I 0.777
GLYMA09G06730 Glycine max GLYMA09G06730 I 0.772
GLYMA15G17956 Glycine max GLYMA15G17956 I 0.772
Ca_08838 Cicer arietinum Ca_08838 I 0.749
29671.m000294 Ricinus communis 29671.m000294 I 0.741
cassava27173.m1 Manihot esculenta cassava27173.m1 I 0.710
MTR_2g038000 Medicago truncatula MTR_2g038000 D 0.704
POPTR_0006s07520 Populus trichocarpa POPTR_0006s07520 N 0.699
POPTR_0018s13920 Populus trichocarpa POPTR_0018s13920 N 0.699
Gorai.009G002500 Gossypium raimondii Gorai.009G002500 I 0.684
Bo1g014710 Brassica oleracea Bo1g014710 I 0.662
Bra011153 Brassica rapa Bra011153 I 0.662
chr4.CM0244.10.nd Lotus japonicus chr4.CM0244.10.nd I 0.661
mgf003961m Mimulus guttatus mgf003961m I 0.651
Eucgr.C00114 Eucalyptus grandis Eucgr.C00114 I 0.646
Bostr.7867s0841 Boechera stricta Bostr.7867s0841 I 0.631
Thhalv10024489m.g Eutrema salsugineum Thhalv10024489m.g I 0.631
PGSC0003DMG400028740 Solanum tuberosum PGSC0003DMG400028740 I 0.627
Solyc07g008730.1 Solanum lycopersicum Solyc07g008730.1 I 0.627
Bo3g175850 Brassica oleracea Bo3g175850 I 0.621
Bra010310 Brassica rapa Bra010310 I 0.621
Cagra.0268s0009 Capsella grandiflora Cagra.0268s0009 I 0.617
Carubv10004175m.g Capsella rubella Carubv10004175m.g I 0.617
SapurV1A.0140s0170 Salix purpurea SapurV1A.0140s0170 N 0.600