PGSC0003DMG400028740 (Solanum tuberosum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 PGSC0003DMG400028740 T222214_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MTR_2g038000
M02141_2.00 		Medicago truncatula
NDNYWNNNNN
NNNNNWRNHN		 PBM
Weirauch et al.(2014)
pTH6339 		0.621 0.614
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400073955 Homeodomain 495 551
PGSC0003DMT400073956 Homeodomain 484 540
PGSC0003DMT400073957 Homeodomain 484 540

Links

Other Homeodomain family TFs
Other Solanum tuberosum TFs

17 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Solyc07g008730.1 Solanum lycopersicum Solyc07g008730.1 I 0.834
mgf003961m Mimulus guttatus mgf003961m I 0.724
Eucgr.C00114 Eucalyptus grandis Eucgr.C00114 I 0.669
POPTR_0018s13920 Populus trichocarpa POPTR_0018s13920 N 0.666
POPTR_0006s07520 Populus trichocarpa POPTR_0006s07520 N 0.665
SapurV1A.0140s0170 Salix purpurea SapurV1A.0140s0170 N 0.664
chr4.CM0244.10.nd Lotus japonicus chr4.CM0244.10.nd I 0.652
Ca_08838 Cicer arietinum Ca_08838 I 0.640
Bo3g175850 Brassica oleracea Bo3g175850 I 0.636
Bra010310 Brassica rapa Bra010310 I 0.636
Gorai.009G002500 Gossypium raimondii Gorai.009G002500 I 0.633
GLYMA13G00540 Glycine max GLYMA13G00540 I 0.627
GLYMA17G06690 Glycine max GLYMA17G06690 I 0.627
29671.m000294 Ricinus communis 29671.m000294 I 0.623
MTR_2g038000 Medicago truncatula MTR_2g038000 D 0.621
GSMUA_Achr8G23890_001 Musa acuminata GSMUA_Achr8G23890_001 N 0.601