CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Gorai.006G273000 *(Gossypium raimondii)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00046 (Homeobox)	IPR001356	Gorai.006G273000	T228724_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ATHB-5 M06932_2.00	Arabidopsis thaliana	NYAATMATTND	HNAATKATTRN	Dap-seq OMalley et al.(2016) ATHB5_col_a	0.826	0.860
ATHB-5 M06933_2.00	Arabidopsis thaliana	NYAATMATTN	NAATKATTRN	Dap-seq OMalley et al.(2016) ATHB5_colamp_a	0.826	0.860
ATHB-5 M02684_2.00	Arabidopsis thaliana	CAATVATTGVVSV	BSBBCAATBATTG	SELEX Mathelier et al.(2014) MA0110.2	0.826	0.860
ATHB-5 M10630_2.00	Arabidopsis thaliana	CAATVATTG	CAATBATTG	Transfac Matys et al.(2006) P$ATHB5_01	0.826	0.860
ATHB-13 M06900_2.00	Arabidopsis thaliana	HYAATAATTDD	HHAATTATTRD	Dap-seq OMalley et al.(2016) ATHB13_col_a	0.818	0.807
ATHB-13 M06901_2.00	Arabidopsis thaliana	NYAATAATTRW	WYAATTATTRN	Dap-seq OMalley et al.(2016) ATHB13_colamp_a	0.818	0.807
estExt_gwp_gw1.C_70211 M02220_2.00	Physcomitrella patens	HMATNANDNN	NNHNTNATKD	PBM Weirauch et al.(2014) pTH8489	0.811	0.789
ATHB-6 M02040_2.00	Arabidopsis thaliana	HATNATTDN	NHAATNATD	PBM Weirauch et al.(2014) pTH7670	0.808	0.860
ATHB-6 M06909_2.00	Arabidopsis thaliana	NNNHATKATTR	YAATMATDNNN	Dap-seq OMalley et al.(2016) ATHB6_col_a	0.808	0.860
ATHB-6 M06910_2.00	Arabidopsis thaliana	NCAATAATTRN	NYAATTATTGN	Dap-seq OMalley et al.(2016) ATHB6_colamp_a	0.808	0.860
ATHB-16 M02050_2.00	Arabidopsis thaliana	YAATMATT	AATKATTR	PBM Weirauch et al.(2014) pTH7270	0.808	0.825
HAT5 M06914_2.00	Arabidopsis thaliana	NHAATAATTDW	WHAATTATTDN	Dap-seq OMalley et al.(2016) HAT5_col_a	0.795	0.737
HAT5 M06915_2.00	Arabidopsis thaliana	WNYAATAATTRWDN	NHWYAATTATTRNW	Dap-seq OMalley et al.(2016) HAT5_colamp_a	0.795	0.737
HAT5 M02683_2.00	Arabidopsis thaliana	SCAATAATTNNV	BNNAATTATTGS	SELEX Mathelier et al.(2014) MA0008.2	0.795	0.737
HAT5 M10624_2.00	Arabidopsis thaliana	YSCAATAATTNNVN	NBNNAATTATTGSR	Transfac Matys et al.(2006) P$ATHB1_01	0.795	0.737
ATHB-21 M06907_2.00	Arabidopsis thaliana	NNWHCAATWATTDN	NHAATWATTGDWNN	Dap-seq OMalley et al.(2016) ATHB21_col_a	0.716	0.632
ATHB-21 M06908_2.00	Arabidopsis thaliana	WWDDNNNHAATWATTGDTNN	NNAHCAATWATTDNNNHHWW	Dap-seq OMalley et al.(2016) ATHB21_colamp_a	0.716	0.632
HB-5 M06924_2.00	Arabidopsis thaliana	NNAHCAATWATTKDNNNHWWH	DWWDNNNHMAATWATTGDTNN	Dap-seq OMalley et al.(2016) ATHB40_col_a	0.716	0.614
HB-5 M06925_2.00	Arabidopsis thaliana	HHAATWATTGDWNN	NNWHCAATWATTDD	Dap-seq OMalley et al.(2016) ATHB40_colamp_a	0.716	0.614
ATHB-53 M06934_2.00	Arabidopsis thaliana	HMAATAATTRD	HYAATTATTKD	Dap-seq OMalley et al.(2016) ATHB53_col_a	0.712	0.596
ATHB-53 M06935_2.00	Arabidopsis thaliana	NNWHCAATWATTDDN	NHHAATWATTGDWNN	Dap-seq OMalley et al.(2016) ATHB53_colamp_a	0.712	0.596
PK20392.1 M01250_2.00	Cannabis sativa	NHAATMATDN	NHATKATTDN	PBM Lambert et al.(2019) pTH11331	0.676	0.772
PK20392.1 M01251_2.00	Cannabis sativa	NHAATMATDN	NHATKATTDN	PBM Lambert et al.(2019) pTH11332	0.676	0.772
ATHB-20 M06912_2.00	Arabidopsis thaliana	HYAATAATTRD	HYAATTATTRD	Dap-seq OMalley et al.(2016) ATHB20_col_a	0.655	0.754
ATHB-20 M06913_2.00	Arabidopsis thaliana	HYAATMATTRD	HYAATKATTRD	Dap-seq OMalley et al.(2016) ATHB20_colamp_a	0.655	0.754
ATHB-7 M02043_2.00	Arabidopsis thaliana	NHWTGATTGN	NCAATCAWDN	PBM Weirauch et al.(2014) pTH8090	0.612	0.614
ATHB-7 M06911_2.00	Arabidopsis thaliana	NHYCAATCATTSW	WSAATGATTGRDN	Dap-seq OMalley et al.(2016) ATHB7_col_a	0.612	0.614
For this family, TFs with SR scores > 0.599* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Gorai.006G273000.1	Homeodomain	18	74	TEKKRRLSMHQVKALEKNFDVGNKLEPERKVKLAEELGLQPRQVAIWFQNRRARWKT

Links
Other Homeodomain family TFs
Other *Gossypium raimondii* TFs

814 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
NAC083	Arabidopsis thaliana	AT5G13180	D	0.000
cassava12891.valid.m1	Manihot esculenta	cassava12891.valid.m1	I	0.000
PK12461.1	Cannabis sativa	PK12461.1	I	0.000
Cucsa.349370	Cucumis sativus	Cucsa.349370	I	0.000
Aquca_011_00050	Aquilegia coerulea	Aquca_011_00050	I	0.000
Aquca_021_00051	Aquilegia coerulea	Aquca_021_00051	I	0.000
Bostr.2902s0053	Boechera stricta	Bostr.2902s0053	I	0.000
Cagra.0596s0010	Capsella grandiflora	Cagra.0596s0010	I	0.000
Carubv10002548m.g	Capsella rubella	Carubv10002548m.g	I	0.000
Ciclev10032547m.g	Citrus clementina	Ciclev10032547m.g	I	0.000
Eucgr.H03387	Eucalyptus grandis	Eucgr.H03387	I	0.000
Gorai.005G195300	Gossypium raimondii	Gorai.005G195300	I	0.000
Gorai.012G125500	Gossypium raimondii	Gorai.012G125500	I	0.000
MDP0000126517	Malus domestica	MDP0000126517	I	0.000
MDP0000130123	Malus domestica	MDP0000130123	I	0.000
orange1.1g030727m.g	Citrus sinensis	orange1.1g030727m.g	I	0.000
SapurV1A.0173s0020	Salix purpurea	SapurV1A.0173s0020	I	0.000
SapurV1A.0453s0210	Salix purpurea	SapurV1A.0453s0210	I	0.000
Thhalv10017152m.g	Eutrema salsugineum	Thhalv10017152m.g	I	0.000
NAC041	Arabidopsis thaliana	AT2G33480	I	0.000
PRUPE_ppa010222mg	Prunus persica	PRUPE_ppa010222mg	I	0.000
ANAC041	Arabidopsis lyrata	fgenesh2_kg.4__1354__AT2G33480.1	I	0.000
GLYMA08G47520	Glycine max	GLYMA08G47520	I	0.000
GLYMA18G53954	Glycine max	GLYMA18G53954	I	0.000
POPTR_0001s13380	Populus trichocarpa	POPTR_0001s13380	I	0.000
POPTR_0003s16490	Populus trichocarpa	POPTR_0003s16490	I	0.000
cassava1138.valid.m1	Manihot esculenta	cassava1138.valid.m1	I	0.000
ANAC083	Arabidopsis lyrata	scaffold_601328.1	I	0.000
TCM_014713	Theobroma cacao	TCM_014713	I	0.000
ANAC083	Vitis vinifera	VIT_01s0146g00280	I	0.000
Cla001517	Citrullus lanatus	Cla001517	I	0.000
Pm007070	Prunus mume	Pm007070	I	0.000
30128.m009035	Ricinus communis	30128.m009035	I	0.000
PRUPE_ppa027024mg	Prunus persica	PRUPE_ppa027024mg	N	0.000
gene06460-v1.0-hybrid	Fragaria vesca	gene06460-v1.0-hybrid	N	0.000
Ca_05696	Cicer arietinum	Ca_05696	N	0.000
MTR_8g099750	Medicago truncatula	MTR_8g099750	N	0.000
MDP0000130686	Malus domestica	MDP0000130686	N	0.000
MDP0000807087	Malus domestica	MDP0000807087	N	0.000
MTR_3g098810	Medicago truncatula	MTR_3g098810	N	0.000
Pm024558	Prunus mume	Pm024558	N	0.000
GLYMA06G17480	Glycine max	GLYMA06G17480	N	0.000

Gorai.006G273000 (Gossypium raimondii) Homeodomain

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

814 Related TFs

Gorai.006G273000 **(Gossypium raimondii)
Homeodomain**