orange1.1g000279m.g (Citrus sinensis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 orange1.1g000279m.g T229128_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RLT1
M02038_2.00 		Arabidopsis thaliana
NDHTCWWN
NWWGADHN		 PBM
Weirauch et al.(2014)
pTH5432 		0.855 0.895
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g000279m Homeodomain 33 89
orange1.1g000281m Homeodomain 33 89
orange1.1g000285m Homeodomain 33 89
orange1.1g000448m Homeodomain 33 89

Links

Other Homeodomain family TFs
Other Citrus sinensis TFs

112 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F443_16830 Phytophthora parasitica F443_16830 N 0.000
fgenesh_scip_prom.28083.2092 Phytophthora lateralis fgenesh_scip_prom.28083.2092 N 0.000
fgenesh_scip_prom.46568.6853 Phytophthora kernoviae fgenesh_scip_prom.46568.6853 N 0.000
maker-pve_contig_26-fgenesh-gene-0.13 Pythium vexans maker-pve_contig_26-fgenesh-gene-0.13 N 0.000
Phyra84537 Phytophthora ramorum Phyra84537 N 0.000
PITG_17552 Phytophthora infestans PITG_17552 N 0.000
PITG_17554 Phytophthora infestans PITG_17554 N 0.000
PYU1_G006460 Pythium ultimum PYU1_G006460 N 0.000
estExt_fgenesh1_kg.C_90390 Phytophthora capsici estExt_fgenesh1_kg.C_90390 N 0.000