Pavir.Ca00923 (Panicum virgatum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Pavir.Ca00923 T229225_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RLT1
M02038_2.00 		Arabidopsis thaliana
NDHTCWWN
NWWGADHN		 PBM
Weirauch et al.(2014)
pTH5432 		0.645 0.684
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ca00923.1.p Homeodomain 49 105

Links

Other Homeodomain family TFs
Other Panicum virgatum TFs

111 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
FFUJ_02866 Fusarium fujikuroi FFUJ_02866 N 0.000
FVEG_08195 Fusarium verticillioides FVEG_08195 N 0.000
HPODL_04843 Ogataea parapolymorpha HPODL_04843 N 0.000
PV09_04421 Verruconis gallopava PV09_04421 N 0.000
TRIVIDRAFT_217692 Trichoderma virens TRIVIDRAFT_217692 N 0.000