Pavir.J06816 (Panicum virgatum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Pavir.J06816 T229331_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.686 0.632
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.621 0.447
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.621 0.447
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.621 0.447
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.621 0.447
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J06816.1.p Homeodomain 110 149
Pavir.J06816.2.p Homeodomain 74 113

Links

Other Homeodomain family TFs
Other Panicum virgatum TFs

882 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
fgenesh1_pg.C_scaffold_11000089 Sporobolomyces roseus fgenesh1_pg.C_scaffold_11000089 N 0.000
MVLG_01553 Microbotryum violaceum MVLG_01553 N 0.000
PAS_chr3_1149 Komagataella pastoris PAS_chr3_1149 N 0.000
RHTO_04537 Rhodosporidium toruloides RHTO_04537 N 0.000
SCHCODRAFT_110960 Schizophyllum commune SCHCODRAFT_110960 N 0.000
SPBR_07296 Sporothrix brasiliensis SPBR_07296 N 0.000
sr12520 Sporisorium reilianum sr12520 N 0.000
TRIVIDRAFT_119706 Trichoderma virens TRIVIDRAFT_119706 N 0.000
TSTA_110260 Talaromyces stipitatus TSTA_110260 N 0.000
MPER_12197 Moniliophthora perniciosa MPER_12197 N 0.000
estExt_fgeneshTM_pg.C_10542 Tremella mesenterica estExt_fgeneshTM_pg.C_10542 N 0.000
Kwal_9519 Kluyveromyces waltii Kwal_9519 N 0.000
SAKL0C03872g Lachancea kluyveri SAKL0C03872g N 0.000
SAKL0C03916g Lachancea kluyveri SAKL0C03916g N 0.000
SAKL0C10648g Lachancea kluyveri SAKL0C10648g N 0.000
SAKL0D09922g Lachancea kluyveri SAKL0D09922g N 0.000
XP_002492281.1 Pichia pastoris XP_002492281.1 N 0.000
MCOS_0000664501 Mesocestoides corti MCOS_0000664501 N 0.000
KUCA_T00004799001 Kuraishia capsulata KUCA_T00004799001 N 0.000
BGIBMGA006156 Bombyx mori BGIBMGA006156 N 0.000
CMQ_7998 Grosmannia clavigera CMQ_7998 N 0.000
TCF7L2 Tursiops truncatus ENSTTRG00000002360 N 0.000
F503_05434 Ophiostoma piceae uamh F503_05434 N 0.000
HMPREF1624_00309 Sporothrix schenckii HMPREF1624_00309 N 0.000
HPODL_02662 Ogataea parapolymorpha HPODL_02662 N 0.000
JAAARDRAFT_460099 Jaapia argillacea JAAARDRAFT_460099 N 0.000
K437DRAFT_66818 Tilletiaria anomala K437DRAFT_66818 N 0.000
A1Q1_02593 Trichosporon asahii A1Q1_02593 N 0.000
LALA0_S10e00254g Lachancea lanzarotensis LALA0_S10e00254g N 0.000
M407DRAFT_45069 Tulasnella calospora M407DRAFT_45069 N 0.000
MAC_03708 Metarhizium acridum MAC_03708 N 0.000
MAJ_01270 Metarhizium majus MAJ_01270 N 0.000
MAM_02299 Metarhizium album MAM_02299 N 0.000
MBR_01289 Metarhizium brunneum MBR_01289 N 0.000
Moror_8439 Moniliophthora roreri Moror_8439 N 0.000