SapurV1A.0098s0250 (Salix purpurea)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 SapurV1A.0098s0250 T229420_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.840 0.745
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.626 0.574
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.606 0.447
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.606 0.447
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.606 0.447
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.606 0.447
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SapurV1A.0098s0250.1.p Homeodomain 414 463

Links

Other Homeodomain family TFs
Other Salix purpurea TFs

1013 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
gene24577-v1.0-hybrid Fragaria vesca gene24577-v1.0-hybrid N
29801.m003163 Ricinus communis 29801.m003163 N
30170.m013700 Ricinus communis 30170.m013700 N
cassava46929.m1 Manihot esculenta cassava46929.m1 N
cassava47360.m1 Manihot esculenta cassava47360.m1 N
mgf020647m Mimulus guttatus mgf020647m N
Aquca_007_00701 Aquilegia coerulea Aquca_007_00701 N
Bostr.26675s0191 Boechera stricta Bostr.26675s0191 N
Cagra.2481s0020 Capsella grandiflora Cagra.2481s0020 N
Carubv10011964m.g Capsella rubella Carubv10011964m.g N
Ciclev10003973m.g Citrus clementina Ciclev10003973m.g N
Ciclev10030106m.g Citrus clementina Ciclev10030106m.g N
Eucgr.G01493 Eucalyptus grandis Eucgr.G01493 N
Pm021290 Prunus mume Pm021290 N
Gorai.002G135000 Gossypium raimondii Gorai.002G135000 N
Gorai.013G045100 Gossypium raimondii Gorai.013G045100 N
Lus10024812.g Linum usitatissimum Lus10024812.g N
MDP0000484847 Malus domestica MDP0000484847 N
orange1.1g037241m.g Citrus sinensis orange1.1g037241m.g N
orange1.1g038084m.g Citrus sinensis orange1.1g038084m.g N
Pavir.J18412 Panicum virgatum Pavir.J18412 N
SapurV1A.0005s1150 Salix purpurea SapurV1A.0005s1150 N
SapurV1A.0423s0120 Salix purpurea SapurV1A.0423s0120 N
SapurV1A.0643s0100 Salix purpurea SapurV1A.0643s0100 N
Thhalv10012185m.g Eutrema salsugineum Thhalv10012185m.g N
PRUPE_ppa018148mg Prunus persica PRUPE_ppa018148mg N
Bo5g076460 Brassica oleracea Bo5g076460 N
Bo6g018390 Brassica oleracea Bo6g018390 N
Bra018796 Brassica rapa Bra018796 N
Bra040671 Brassica rapa Bra040671 N
RGE1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1003696 N
GLYMA02G11500 Glycine max GLYMA02G11500 N
GSMUA_Achr9G08780_001 Musa acuminata GSMUA_Achr9G08780_001 N
PGSC0003DMG400025780 Solanum tuberosum PGSC0003DMG400025780 N
PGSC0003DMG400025781 Solanum tuberosum PGSC0003DMG400025781 N
PGSC0003DMG400025783 Solanum tuberosum PGSC0003DMG400025783 N
RGE1 Populus trichocarpa POPTR_0001s31250 N
POPTR_0014s02600 Populus trichocarpa POPTR_0014s02600 N
BHLH95 Arabidopsis thaliana AT1G49770 N
PRUPE_ppa022683mg Prunus persica PRUPE_ppa022683mg N
Solyc01g057300.1 Solanum lycopersicum Solyc01g057300.1 N
Solyc01g107950.1 Solanum lycopersicum Solyc01g107950.1 N
Solyc01g107960.2 Solanum lycopersicum Solyc01g107960.2 N
TCM_007083 Theobroma cacao TCM_007083 N
TCM_033803 Theobroma cacao TCM_033803 N
RGE1 Vitis vinifera VIT_03s0063g00170 N
VIT_18s0001g10300 Vitis vinifera VIT_18s0001g10300 N
Ca_06466 Cicer arietinum Ca_06466 N
Ca_16375 Cicer arietinum Ca_16375 N
Pm005302 Prunus mume Pm005302 N