SMU15032098 (Schmidtea mediterranea)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 SMU15032098 T230296_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ara
M06518_2.00 		Drosophila melanogaster
WWACA
TGTWW		 B1H
Mathelier et al.(2014)
MA0210.1 		0.833 0.947
ara
M06313_2.00 		Drosophila melanogaster
TGTWWWNN
NNWWWACA		 B1H
Zhu et al.(2011)
Ara_Cell_FBgn0015904 		0.833 0.947
ara
M06314_2.00 		Drosophila melanogaster
DWWACA
TGTWWH		 B1H
Zhu et al.(2011)
Ara_SOLEXA_FBgn0015904 		0.833 0.947
caup
M06519_2.00 		Drosophila melanogaster
WAACA
TGTTW		 B1H
Mathelier et al.(2014)
MA0217.1 		0.825 0.912
caup
M06315_2.00 		Drosophila melanogaster
HWDWAACA
TGTTWHWD		 B1H
Zhu et al.(2011)
Caup_Cell_FBgn0015919 		0.825 0.912
caup
M06316_2.00 		Drosophila melanogaster
NDDACA
TGTHHN		 B1H
Zhu et al.(2011)
Caup_SOLEXA_FBgn0015919 		0.825 0.912
Irx2
M00386_2.00 		Mus musculus
NNDACAHNN
NNDTGTHNN		 PBM
Berger et al.(2008)
Irx2_0900 		0.812 0.895
Irx5
M00455_2.00 		Mus musculus
NNNDACAHN
NDTGTHNNN		 PBM
Berger et al.(2008)
Irx5_2385 		0.812 0.895
IRX2
M03212_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX2_1 		0.812 0.895
IRX5
M03222_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX5_1 		0.812 0.895
IRX5
M05315_2.00 		Homo sapiens
NBDTGTHNDACAYVN
NBRTGTHNDACAHVN		 SELEX
Yin et al.(2017)
IRX5_eDBD_HT-SELEX 		0.812 0.895
IRX5
M05316_2.00 		Homo sapiens
WYRYGHHNHAYRYRY
RYRYRTDNDDCRYRW		 SELEX
Yin et al.(2017)
IRX5_eDBD_Methyl-HT-SELEX 		0.812 0.895
Irx6
M00456_2.00 		Mus musculus
NNDAHWN
NWDTHNN		 PBM
Berger et al.(2008)
Irx6_2623 		0.802 0.930
Irx4
M00416_2.00 		Mus musculus
NNNDAMAH
DTKTHNNN		 PBM
Berger et al.(2008)
Irx4_2242 		0.790 0.947
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SMU15032098 Homeodomain 171 230

Links

Other Homeodomain family TFs
Other Schmidtea mediterranea TFs

389 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Eucgr.C03175 Eucalyptus grandis Eucgr.C03175 I
MTR_3g105480 Medicago truncatula MTR_3g105480 I
MTR_3g105510 Medicago truncatula MTR_3g105510 I
Solyc06g054630.1 Solanum lycopersicum Solyc06g054630.1 I
Si008104m.g Setaria italica Si008104m.g I
PGSC0003DMG400030781 Solanum tuberosum PGSC0003DMG400030781 I
OMERI06G09430 Oryza meridionalis OMERI06G09430 N
ORUFI06G08090 Oryza rufipogon ORUFI06G08090 N
ORUFI06G06500 Oryza rufipogon ORUFI06G06500 N
ORGLA06G0057400 Oryza glaberrima ORGLA06G0057400 N
ORGLA06G0057300 Oryza glaberrima ORGLA06G0057300 N
ONIVA06G09060 Oryza nivara ONIVA06G09060 N
ONIVA06G07220 Oryza nivara ONIVA06G07220 N
BGIOSGA022472 Oryza indica BGIOSGA022472 N
OMERI03G32220 Oryza meridionalis OMERI03G32220 N
OGLUM06G08330 Oryza glumaepatula OGLUM06G08330 N
OGLUM06G06550 Oryza glumaepatula OGLUM06G06550 N
OGLUM06G06540 Oryza glumaepatula OGLUM06G06540 N
OBART06G07840 Oryza barthii OBART06G07840 N
OBART06G06230 Oryza barthii OBART06G06230 N
OBART06G06220 Oryza barthii OBART06G06220 N
BGIOSGA022479 Oryza indica BGIOSGA022479 N