SNAPOd2T00004534001 (Oikopleura dioica)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 SNAPOd2T00004534001 T230336_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.799 0.630
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.799 0.630
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.799 0.630
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.799 0.630
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.799 0.630
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.799 0.630
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.799 0.630
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.799 0.630
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.799 0.630
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.726 0.435
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.726 0.435
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.726 0.435
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SNAPOd2T00004534001 Homeodomain 33 78

Links

Other Homeodomain family TFs
Other Oikopleura dioica TFs

1241 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PRDM4 Homo sapiens ENSG00000110851 D 0.000
PRDM4 Otolemur garnettii ENSOGAG00000011945 I 0.000
PRDM4 Ornithorhynchus anatinus ENSOANG00000005526 I 0.000
PRDM4 Ochotona princeps ENSOPRG00000010192 I 0.000
ENSPANG00000022084 Papio anubis ENSPANG00000022084 I 0.000
PRDM4 Procavia capensis ENSPCAG00000009987 I 0.000
ENSPPYG00000004913 Pongo abelii ENSPPYG00000004913 I 0.000
ENSPSIG00000012066 Pelodiscus sinensis ENSPSIG00000012066 I 0.000
PRDM4 Pan troglodytes ENSPTRG00000005400 I 0.000
Prdm4 Rattus norvegicus ENSRNOG00000004962 I 0.000
PRDM4 Sus scrofa ENSSSCG00000000160 I 0.000
ENSSTOG00000016168 Ictidomys tridecemlineatus ENSSTOG00000016168 I 0.000
ENSTGUG00000010962 Taeniopygia guttata ENSTGUG00000010962 I 0.000
ENSTGUG00000015149 Taeniopygia guttata ENSTGUG00000015149 I 0.000
PRDM4 Tursiops truncatus ENSTTRG00000011056 I 0.000
PRDM4 Vicugna pacos ENSVPAG00000002215 I 0.000
Aan_R008654 Calypte anna Aan_R008654 I 0.000
Afo_R011067 Aptenodytes forsteri Afo_R011067 I 0.000
Alligator_sinensis_CCG012513.1 Alligator sinensis Alligator_sinensis_CCG012513.1 I 0.000
Brh_R007685 Buceros rhinoceros Brh_R007685 I 0.000
Cmyd_10007196 Chelonia mydas Cmyd_10007196 I 0.000
ENSP00000228437-D1 Bos grunniens ENSP00000228437-D1 I 0.000
ENSP00000228437 Macaca fascicularis ENSP00000228437 I 0.000
Gfo_R004636 Geospiza fortis Gfo_R004636 I 0.000
Myotis_brandtii_PRDM4_10020406 Myotis brandtii Myotis_brandtii_PRDM4_10020406 I 0.000
Pvit_09756 Pogona vitticeps Pvit_09756 I 0.000
Tal_R009708 Tyto alba Tal_R009708 I 0.000
PRDM4 Gallus gallus ENSGALG00000012619 I 0.000
ENSAPLG00000009846 Anas platyrhynchos ENSAPLG00000009846 I 0.000
PRDM4 Bos taurus ENSBTAG00000012999 I 0.000
PRDM4 Canis familiaris ENSCAFG00000001788 I 0.000
PRDM4 Choloepus hoffmanni ENSCHOG00000001744 I 0.000
PRDM4 Callithrix jacchus ENSCJAG00000015261 I 0.000
ENSCPOG00000022385 Cavia porcellus ENSCPOG00000022385 I 0.000
ENSCSAG00000002896 Chlorocebus sabaeus ENSCSAG00000002896 I 0.000
PRDM4 Dasypus novemcinctus ENSDNOG00000032478 I 0.000
PRDM4 Equus caballus ENSECAG00000015423 I 0.000
PRDM4 Erinaceus europaeus ENSEEUG00000006569 I 0.000
ENSFALG00000013342 Ficedula albicollis ENSFALG00000013342 I 0.000
PRDM4 Felis catus ENSFCAG00000022478 I 0.000
ENSOARG00000017955 Ovis aries ENSOARG00000017955 I 0.000
PRDM4 Gorilla gorilla ENSGGOG00000001244 I 0.000
PRDM4 Loxodonta africana ENSLAFG00000001483 I 0.000
ENSMEUG00000004495 Macropus eugenii ENSMEUG00000004495 I 0.000
PRDM4 Meleagris gallopavo ENSMGAG00000012815 I 0.000
PRDM4 Microcebus murinus ENSMICG00000007807 I 0.000
PRDM4 Myotis lucifugus ENSMLUG00000000767 I 0.000
PRDM4 Macaca mulatta ENSMMUG00000015550 I 0.000
PRDM4 Monodelphis domestica ENSMODG00000001448 I 0.000
ENSMPUG00000012238 Mustela putorius furo ENSMPUG00000012238 I 0.000
Prdm4 Mus musculus ENSMUSG00000035529 I 0.000
ENSNLEG00000006748 Nomascus leucogenys ENSNLEG00000006748 I 0.000
PRDM4 Anolis carolinensis ENSACAG00000014907 I 0.000